Workflows build report for BioC 3.20 - BUILD results for spicyWorkflow on palomino4

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"	4679
palomino4	Windows Server 2022 Datacenter	x64	4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"	4414
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4441
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for spicyWorkflow on palomino4

To the developers/maintainers of the spicyWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: spicyWorkflow

Version: 1.5.0

Command: chmod a+r spicyWorkflow -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spicyWorkflow

StartedAt: 2024-06-11 13:26:26 -0400 (Tue, 11 Jun 2024)

EndedAt: 2024-06-11 13:28:21 -0400 (Tue, 11 Jun 2024)

EllapsedTime: 114.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r spicyWorkflow -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
###
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* checking for file 'spicyWorkflow/DESCRIPTION' ... OK
* preparing 'spicyWorkflow':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'spicyWorkflow.Rmd' using rmarkdown

Quitting from lines 70-83 [load libraries] (spicyWorkflow.Rmd)
Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics:
package or namespace load failed for 'lisaClust':
 object 'cellAnnotation<-' is not exported by 'namespace:spicyR'
--- failed re-building 'spicyWorkflow.Rmd'

SUMMARY: processing the following file failed:
  'spicyWorkflow.Rmd'

Error: Vignette re-building failed.
Execution halted