Back to Build/check report for BioC 3.20 annotations
ABCDEFGHI[J]KLMNOPQRSTUVWXYZ

This page was generated on 2024-11-27 08:30 -0500 (Wed, 27 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4739
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 32/47HostnameOS / ArchINSTALLBUILDCHECK
JASPAR2024 0.99.6  (landing page)
Damir Baranasic
Snapshot Date: 2024-11-27 06:00 -0500 (Wed, 27 Nov 2024)
git_url: https://git.bioconductor.org/packages/JASPAR2024
git_branch: RELEASE_3_20
git_last_commit: 524c83e
git_last_commit_date: 2023-10-17 06:51:51 -0500 (Tue, 17 Oct 2023)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for JASPAR2024 on nebbiolo2

To the developers/maintainers of the JASPAR2024 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: JASPAR2024
Version: 0.99.6
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data JASPAR2024
StartedAt: 2024-11-27 06:32:02 -0500 (Wed, 27 Nov 2024)
EndedAt: 2024-11-27 06:32:14 -0500 (Wed, 27 Nov 2024)
EllapsedTime: 12.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data JASPAR2024
###
##############################################################################
##############################################################################


* checking for file ‘JASPAR2024/DESCRIPTION’ ... OK
* preparing ‘JASPAR2024’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘JASPAR2024.Rmd’ using rmarkdown

Quitting from lines 28-36 [setup] (JASPAR2024.Rmd)
Error: processing vignette 'JASPAR2024.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘JASPAR2024.Rmd’

SUMMARY: processing the following file failed:
  ‘JASPAR2024.Rmd’

Error: Vignette re-building failed.
Execution halted