Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-11-14 r87333) -- "Unsuffered Consequences"	861
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INSTALL results for mbkmeans on teran2

To the developers/maintainers of the mbkmeans package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: mbkmeans

Version: 1.23.0

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL mbkmeans

StartedAt: 2024-12-04 06:30:05 -0500 (Wed, 04 Dec 2024)

EndedAt: 2024-12-04 06:31:00 -0500 (Wed, 04 Dec 2024)

EllapsedTime: 55.1 seconds

RetCode: 0

Status: OK

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL mbkmeans
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘mbkmeans’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++11
g++ -std=gnu++11 -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/RcppArmadillo/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhdf5lib/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include' -I/usr/local/include    -fpic  -g -O2  -Wall -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rcpp/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/RcppArmadillo/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhdf5lib/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/beachmat/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include' -I/usr/local/include    -fpic  -g -O2  -Wall -DR_NO_REMAP -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include/ClusterRHeader.h: In member function ‘arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)’:
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  862 |         bool status;
      |              ^~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include/ClusterRHeader.h: In instantiation of ‘T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_full<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]’:
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include/ClusterRHeader.h:1592:65:   required from here
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1530 |         bool status;
      |              ^~~~~~
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include/ClusterRHeader.h: In instantiation of ‘T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_diag<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]’:
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include/ClusterRHeader.h:1626:65:   required from here
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
g++ -std=gnu++11 -shared -L/usr/local/lib -o mbkmeans.so RcppExports.o mini_batch.o
installing to /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/00LOCK-mbkmeans/00new/mbkmeans/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mbkmeans)