Back to Rapid builds (Linux only) of a subset of BioC 3.21
Report updated every 6 hours

This page was generated on 2025-01-22 15:40 -0500 (Wed, 22 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 867
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 122/217HostnameOS / ArchINSTALLBUILDCHECK
karyoploteR 1.33.0  (landing page)
Bernat Gel
Snapshot Date: 2025-01-22 12:00 -0500 (Wed, 22 Jan 2025)
git_url: https://git.bioconductor.org/packages/karyoploteR
git_branch: devel
git_last_commit: 4e6d89c
git_last_commit_date: 2024-10-29 10:16:53 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for karyoploteR on teran2

To the developers/maintainers of the karyoploteR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: karyoploteR
Version: 1.33.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data karyoploteR
StartedAt: 2025-01-22 13:01:57 -0500 (Wed, 22 Jan 2025)
EndedAt: 2025-01-22 13:03:02 -0500 (Wed, 22 Jan 2025)
EllapsedTime: 65.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data karyoploteR
###
##############################################################################
##############################################################################


* checking for file ‘karyoploteR/DESCRIPTION’ ... OK
* preparing ‘karyoploteR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘karyoploteR.Rmd’ using rmarkdown

Quitting from lines 315-320 [unnamed-chunk-21] (karyoploteR.Rmd)
Error: processing vignette 'karyoploteR.Rmd' failed with diagnostics:
invalid 'scipen'
--- failed re-building ‘karyoploteR.Rmd’

SUMMARY: processing the following file failed:
  ‘karyoploteR.Rmd’

Error: Vignette re-building failed.
Execution halted