Back to Rapid builds (Linux only) of a subset of BioC 3.21
Report updated every 6 hours

This page was generated on 2024-12-04 09:55 -0500 (Wed, 04 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-11-14 r87333) -- "Unsuffered Consequences" 861
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 75/216HostnameOS / ArchINSTALLBUILDCHECK
EnhancedVolcano 1.25.0  (landing page)
Kevin Blighe
Snapshot Date: 2024-12-04 06:00 -0500 (Wed, 04 Dec 2024)
git_url: https://git.bioconductor.org/packages/EnhancedVolcano
git_branch: devel
git_last_commit: 88a8e6a
git_last_commit_date: 2024-10-29 10:30:46 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for EnhancedVolcano on teran2

To the developers/maintainers of the EnhancedVolcano package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EnhancedVolcano
Version: 1.25.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnhancedVolcano
StartedAt: 2024-12-04 06:50:47 -0500 (Wed, 04 Dec 2024)
EndedAt: 2024-12-04 06:51:57 -0500 (Wed, 04 Dec 2024)
EllapsedTime: 69.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnhancedVolcano
###
##############################################################################
##############################################################################


* checking for file ‘EnhancedVolcano/DESCRIPTION’ ... OK
* preparing ‘EnhancedVolcano’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EnhancedVolcano.Rmd’ using rmarkdown
Warning: ggrepel: 11 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 6 unlabeled data points (too many overlaps). Consider increasing max.overlaps
Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider increasing max.overlaps

Quitting from lines 678-722 [ex14] (EnhancedVolcano.Rmd)
Error: processing vignette 'EnhancedVolcano.Rmd' failed with diagnostics:
there is no package called 'pasilla'
--- failed re-building ‘EnhancedVolcano.Rmd’

SUMMARY: processing the following file failed:
  ‘EnhancedVolcano.Rmd’

Error: Vignette re-building failed.
Execution halted