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###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:BiocBaseUtils.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings BiocBaseUtils_1.9.0.tar.gz
###
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/BiocBaseUtils.Rcheck’
* using R Under development (unstable) (2024-11-14 r87333)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘BiocBaseUtils/DESCRIPTION’ ... OK
* this is package ‘BiocBaseUtils’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocBaseUtils’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘tinytest.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL BiocBaseUtils
###
##############################################################################
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘BiocBaseUtils’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocBaseUtils)

R Under development (unstable) (2024-11-14 r87333) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> if (requireNamespace("tinytest", quietly = TRUE))
+     tinytest::test_package("BiocBaseUtils")

test_assertions.R.............    1 tests OK 
test_assertions.R.............    2 tests OK 
test_assertions.R.............    3 tests OK 
test_assertions.R.............    4 tests OK 
test_assertions.R.............    5 tests OK 
test_assertions.R.............    6 tests OK 
test_assertions.R.............    7 tests OK 
test_assertions.R.............    8 tests OK 
test_assertions.R.............    9 tests OK 
test_assertions.R.............   10 tests OK 
test_assertions.R.............   11 tests OK 
test_assertions.R.............   12 tests OK 
test_assertions.R.............   13 tests OK 36ms
 You are using 'tinytest::' to express test expectations.
 The results from these tests are not collected. Found the following occurrences:
 > test_checkInstalled.R#006: tinytest::expect_match 
 Remove the 'tinytest::' prefix to register the test results.FALSE
The following package(s) are required for this function:

  BiocManager::install("abc123xyzjfk")


test_checkInstalled.R.........    1 tests OK 
test_checkInstalled.R.........    1 tests OK 
test_checkInstalled.R.........    2 tests OK 4ms

test_internals.R..............    0 tests    
test_internals.R..............    0 tests    
test_internals.R..............    0 tests    
test_internals.R..............    1 tests OK 
test_internals.R..............    1 tests OK 
test_internals.R..............    2 tests OK 
test_internals.R..............    3 tests OK 11ms

test_lifeCycle.R..............    0 tests    
test_lifeCycle.R..............    1 tests OK 
test_lifeCycle.R..............    2 tests OK 
test_lifeCycle.R..............    3 tests OK 
test_lifeCycle.R..............    3 tests OK 
test_lifeCycle.R..............    4 tests OK 
test_lifeCycle.R..............    5 tests OK 
test_lifeCycle.R..............    6 tests OK 10ms

test_showUtils.R..............    1 tests OK 
test_showUtils.R..............    2 tests OK 
test_showUtils.R..............    3 tests OK 
test_showUtils.R..............    4 tests OK 
test_showUtils.R..............    5 tests OK 
test_showUtils.R..............    6 tests OK 2ms
All ok, 30 results (67ms)
> 
> proc.time()
   user  system elapsed 
  0.170   0.057   0.234