Back to Mac ARM64 build report for BioC 3.19 |
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This page was generated on 2024-05-07 11:32:31 -0400 (Tue, 07 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 439/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Remy Nicolle
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ||||||||
To the developers/maintainers of the CoRegNet package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CoRegNet |
Version: 1.42.0 |
Command: rm -rf CoRegNet.buildbin-libdir && mkdir CoRegNet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CoRegNet_1.42.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CoRegNet.buildbin-libdir |
StartedAt: 2024-05-07 02:28:48 -0400 (Tue, 07 May 2024) |
EndedAt: 2024-05-07 02:28:53 -0400 (Tue, 07 May 2024) |
EllapsedTime: 5.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: CoRegNet_1.42.0.tgz |
PackageFileSize: 3.761 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CoRegNet.buildbin-libdir && mkdir CoRegNet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CoRegNet_1.42.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CoRegNet.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CoRegNet.buildbin-libdir CoRegNet_1.42.0.tar.gz' >>>>>>> * installing *source* package ‘CoRegNet’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c comblicorn.c -o comblicorn.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o CoRegNet.so comblicorn.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.19-bioc-mac-arm64/meat/CoRegNet.buildbin-libdir/00LOCK-CoRegNet/00new/CoRegNet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Package 'CoRegNet' is deprecated and will be removed from Bioconductor version 3.20 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Package 'CoRegNet' is deprecated and will be removed from Bioconductor version 3.20 ** testing if installed package keeps a record of temporary installation path * DONE (CoRegNet) >>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR CoRegNet.buildbin-libdir/CoRegNet/libs/CoRegNet.so >>>>>>> >>>>>>> Paths before fix: CoRegNet.buildbin-libdir/CoRegNet/libs/CoRegNet.so: CoRegNet.so (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib (compatibility version 4.4.0, current version 4.4.0) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5) >>>>>>> Fix with install_name_tool: install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libgcc_s.1.1.dylib" "CoRegNet.buildbin-libdir/CoRegNet/libs/CoRegNet.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libgfortran.5.dylib" "CoRegNet.buildbin-libdir/CoRegNet/libs/CoRegNet.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libquadmath.0.dylib" "CoRegNet.buildbin-libdir/CoRegNet/libs/CoRegNet.so" >>>>>>> Paths after fix: CoRegNet.buildbin-libdir/CoRegNet/libs/CoRegNet.so: CoRegNet.so (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib (compatibility version 4.4.0, current version 4.4.0) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)