Back to Long Tests report for BioC 3.20

This page was generated on 2025-01-18 23:55 -0500 (Sat, 18 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4746
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4489
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4517
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-01-18 09:55 -0500 (Sat, 18 Jan 2025)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_20
git_last_commit: b6b4ed9
git_last_commit_date: 2024-10-29 11:09:30 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  WARNINGS  
merida1macOS 12.7.5 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on merida1

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
StartedAt: 2025-01-18 16:01:23 -0500 (Sat, 18 Jan 2025)
EndedAt: 2025-01-18 16:03:55 -0500 (Sat, 18 Jan 2025)
EllapsedTime: 152.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2025-01-18 16:02:18.040][biodb::testContext]
biodb.INFO [2025-01-18 16:02:18.043][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-18 16:02:18.045][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2025-01-18 16:02:18.046][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-18 16:02:18.047][biodb::testContext]
biodb.INFO [2025-01-18 16:02:18.054][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-18 16:02:18.056][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-18 16:02:18.065][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:02:18.066][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-18 16:02:18.067][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-18 16:02:18.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.072][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-18 16:02:18.098][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-18 16:02:18.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.102][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-18 16:02:18.104][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-18 16:02:18.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.108][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-18 16:02:18.110][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-18 16:02:18.111][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-18 16:02:18.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.116][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-18 16:02:18.117][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-18 16:02:18.118][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-18 16:02:18.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.123][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-18 16:02:18.124][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-18 16:02:18.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.128][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-18 16:02:18.130][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-18 16:02:18.131][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-18 16:02:18.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.135][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-18 16:02:18.137][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-18 16:02:18.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.141][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-18 16:02:18.142][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-18 16:02:18.144][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-18 16:02:18.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.148][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-18 16:02:18.150][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-18 16:02:18.151][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-18 16:02:18.152][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-18 16:02:18.153][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-18 16:02:18.155][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-18 16:02:18.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.159][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-18 16:02:18.161][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-18 16:02:18.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.165][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-18 16:02:18.166][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-18 16:02:18.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.171][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-18 16:02:18.172][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-18 16:02:18.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.177][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-18 16:02:18.178][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-18 16:02:18.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.183][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-18 16:02:18.184][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-18 16:02:18.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.189][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-18 16:02:18.190][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-18 16:02:18.200][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-18 16:02:18.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.205][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-18 16:02:18.206][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-18 16:02:18.207][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-18 16:02:18.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.215][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-18 16:02:18.267][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.288][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-18 16:02:18.290][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.291][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:18.292][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.293][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.295][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.296][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.297][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-18 16:02:18.298][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:18.300][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.301][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-18 16:02:18.302][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:18.303][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.304][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.306][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:02:18.306][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:02:18.306][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:02:18.306][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-18 16:02:18.306][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-18 16:02:18.307][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:02:18.308][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.309][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.311][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:18.312][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.313][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.314][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.315][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.316][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:18.317][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:18.319][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.320][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.321][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-18 16:02:18.324][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.325][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-18 16:02:18.326][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.327][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:18.329][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.330][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.331][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.334][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-18 16:02:18.335][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:18.336][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.337][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-18 16:02:18.339][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:18.340][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.341][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.342][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:02:18.342][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:02:18.342][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:02:18.342][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-18 16:02:18.342][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-18 16:02:18.343][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:02:18.345][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.346][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.347][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:18.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.349][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.351][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.352][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.353][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:18.354][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:18.355][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.357][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.359][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-18 16:02:18.361][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.362][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-18 16:02:18.364][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.365][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:18.366][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.367][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.369][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.370][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.371][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-18 16:02:18.372][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:18.373][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.375][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-18 16:02:18.376][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:18.377][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.378][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.380][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.381][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:02:18.382][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.383][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.384][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:18.385][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.386][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.388][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.389][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.390][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:18.391][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:18.392][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.393][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.395][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-18 16:02:18.397][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.398][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-18 16:02:18.400][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.401][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:18.402][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.403][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.404][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.406][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.407][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-18 16:02:18.408][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:18.409][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.411][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-18 16:02:18.412][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:18.413][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.414][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.415][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.417][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:02:18.418][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.420][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:18.421][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.423][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.424][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.425][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.426][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:18.427][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:18.429][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.430][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.434][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:02:18.435][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.535][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-18 16:02:18.540][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-18 16:02:18.541][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-18 16:02:18.543][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-18 16:02:18.545][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-18 16:02:18.546][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-18 16:02:18.548][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-18 16:02:18.550][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-18 16:02:18.551][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-18 16:02:18.553][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-18 16:02:18.555][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-18 16:02:18.556][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-18 16:02:18.558][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-18 16:02:18.560][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-18 16:02:18.561][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-18 16:02:18.563][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-18 16:02:18.565][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-18 16:02:18.566][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-18 16:02:18.568][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-18 16:02:18.570][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-18 16:02:18.571][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-18 16:02:18.573][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-18 16:02:18.575][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-18 16:02:18.577][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-18 16:02:18.578][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-18 16:02:18.580][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-18 16:02:18.582][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-18 16:02:18.583][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-18 16:02:18.585][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-18 16:02:18.587][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-18 16:02:18.588][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-18 16:02:18.590][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-18 16:02:18.592][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-18 16:02:18.593][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-18 16:02:18.595][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-18 16:02:18.597][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-18 16:02:18.598][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-18 16:02:18.600][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-18 16:02:18.602][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-18 16:02:18.603][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-18 16:02:18.605][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-18 16:02:18.607][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-18 16:02:18.608][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-18 16:02:18.610][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-18 16:02:18.612][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-18 16:02:18.614][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-18 16:02:18.615][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-18 16:02:18.617][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-18 16:02:18.619][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-18 16:02:18.620][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-18 16:02:18.622][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-18 16:02:18.624][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-18 16:02:18.625][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-18 16:02:18.627][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-18 16:02:18.629][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-18 16:02:18.630][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-18 16:02:18.632][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-18 16:02:18.634][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-18 16:02:18.635][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-18 16:02:18.637][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-18 16:02:18.639][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-18 16:02:18.640][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-18 16:02:18.642][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-18 16:02:18.644][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-18 16:02:18.646][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-18 16:02:18.647][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-18 16:02:18.649][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-18 16:02:18.651][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-18 16:02:18.652][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-18 16:02:18.654][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-18 16:02:18.656][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-18 16:02:18.657][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-18 16:02:18.659][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-18 16:02:18.661][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-18 16:02:18.663][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-18 16:02:18.664][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-18 16:02:18.666][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-18 16:02:18.668][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-18 16:02:18.669][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-18 16:02:18.671][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-18 16:02:18.673][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-18 16:02:18.674][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-18 16:02:18.676][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-18 16:02:18.684][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-18 16:02:18.686][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-18 16:02:18.689][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:02:18.690][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.692][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:18.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:18.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:18.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:18.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:18.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:18.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:18.835][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-01-18 16:02:18.848][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-01-18 16:02:18.851][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.852][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-01-18 16:02:18.853][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.854][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:18.856][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.857][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.858][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.859][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.860][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-01-18 16:02:18.862][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:18.863][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.864][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-01-18 16:02:18.865][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:18.867][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-01-18 16:02:18.867][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-01-18 16:02:18.868][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.869][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.870][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-18 16:02:18.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.873][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.874][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:18.875][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.876][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.877][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.879][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:18.879][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-01-18 16:02:18.880][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:18.881][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:18.882][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.883][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.885][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-01-18 16:02:18.887][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.889][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-01-18 16:02:18.890][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.891][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:18.892][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.894][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.895][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.896][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.897][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:02:18.899][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:18.900][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.901][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-01-18 16:02:18.902][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:18.904][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-01-18 16:02:18.904][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-01-18 16:02:18.904][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-01-18 16:02:18.904][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-01-18 16:02:18.904][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-01-18 16:02:18.904][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-01-18 16:02:18.905][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.906][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:02:18.907][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-18 16:02:18.909][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.910][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.911][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:18.912][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.913][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.914][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.916][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:02:18.916][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:02:18.917][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:18.918][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:18.919][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.921][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:18.945][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-01-18 16:02:18.948][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.949][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-01-18 16:02:18.950][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.951][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:18.952][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.954][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.955][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.956][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.957][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:02:18.959][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:18.960][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.961][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-01-18 16:02:18.962][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.963][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:18.965][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:18.966][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:02:18.966][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:02:18.966][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:02:18.967][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-01-18 16:02:18.969][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.971][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:18.972][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:18.973][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:18.974][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.976][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:02:18.976][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:02:18.976][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-01-18 16:02:18.977][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:18.978][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:18.979][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.980][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:02:18.982][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-01-18 16:02:18.984][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.986][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-01-18 16:02:18.987][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.988][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:18.989][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.991][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.992][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.993][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:18.994][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:02:18.996][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:18.997][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:18.998][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-01-18 16:02:18.999][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:19.001][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-01-18 16:02:19.001][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-01-18 16:02:19.002][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:19.003][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:19.004][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-01-18 16:02:19.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:19.007][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:19.008][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:19.009][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:19.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:19.011][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:19.012][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:02:19.012][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:02:19.012][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-01-18 16:02:19.014][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:19.015][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:19.016][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:19.017][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:02:19.025][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-01-18 16:02:19.027][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-18 16:02:19.029][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-18 16:02:19.031][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-01-18 16:02:19.032][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-18 16:02:19.034][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-01-18 16:02:19.056][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-01-18 16:02:19.057][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-01-18 16:02:19.062][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-01-18 16:02:19.066][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-01-18 16:02:19.071][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:19.072][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:19.074][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-01-18 16:02:19.075][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:19.076][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:19.078][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2025-01-18 16:02:19.089][biodb::testThat]
biodb.INFO [2025-01-18 16:02:19.090][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-01-18 16:02:19.091][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:19.093][biodb::testThat]
biodb.TRACE[2025-01-18 16:02:19.097][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2025-01-18 16:02:19.099][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:19.103][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:19.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:19.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:19.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:19.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:19.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:19.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:19.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:19.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.179][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.206][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.209][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.246][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:19.346][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2025-01-18 16:02:19.349][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.354][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:19.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:19.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.531][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.532][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.535][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.561][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.570][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.572][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.574][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.590][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.591][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.593][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.603][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.626][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2025-01-18 16:02:19.673][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:19.675][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:19.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:19.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:19.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:19.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:19.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:19.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:19.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:19.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.735][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.737][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.739][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:19.793][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-01-18 16:02:19.820][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.825][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:19.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:19.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:19.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:19.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:19.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:19.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:19.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:19.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:19.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.954][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.957][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.977][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.982][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.987][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.988][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.991][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:19.992][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:19.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:19.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:19.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:20.006][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:20.008][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:20.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:20.010][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:20.016][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:20.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:20.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:20.020][ef$get] fields variable is a list.
biodb.INFO [2025-01-18 16:02:20.030][biodb::testThat]
biodb.INFO [2025-01-18 16:02:20.031][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-18 16:02:20.032][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:20.034][biodb::testThat]
biodb.DEBUG[2025-01-18 16:02:20.036][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2025-01-18 16:02:20.044][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2025-01-18 16:02:20.049][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2025-01-18 16:02:20.050][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2025-01-18 16:02:20.052][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-01-18 16:02:20.053][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:02:20.054][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:20.056][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:20.057][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:02:20.058][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-18 16:02:20.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:20.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:20.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:20.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:20.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:20.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:20.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:20.079][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-01-18 16:02:20.113][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:20.114][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:20.116][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2025-01-18 16:02:21.582][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2025-01-18 16:02:22.914][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:22.917][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2025-01-18 16:02:22.937][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2025-01-18 16:02:22.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:22.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:22.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:22.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:22.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:22.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:22.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:22.982][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2025-01-18 16:02:23.004][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:23.005][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:23.027][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2025-01-18 16:02:24.302][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2025-01-18 16:02:25.590][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:25.593][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2025-01-18 16:02:25.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2025-01-18 16:02:25.608][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2025-01-18 16:02:25.611][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:02:25.613][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2025-01-18 16:02:25.614][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:25.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:25.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:25.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:25.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:25.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:25.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:25.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:25.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.659][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:25.660][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:25.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.662][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:25.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:25.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:25.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:25.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:25.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:25.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:25.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:25.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:25.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:25.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.739][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:25.741][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:25.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.743][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.745][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:25.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:25.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:25.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:25.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:25.822][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2025-01-18 16:02:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:25.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:25.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:25.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:02:25.869][biodb::testThat]
biodb.INFO [2025-01-18 16:02:25.870][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-18 16:02:25.871][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:25.873][biodb::testThat]
biodb.INFO [2025-01-18 16:02:25.880][biodb::testThat]
biodb.INFO [2025-01-18 16:02:25.882][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-01-18 16:02:25.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:25.884][biodb::testThat]
biodb.WARN [2025-01-18 16:02:25.915][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-01-18 16:02:25.940][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-01-18 16:02:25.952][biodb::testThat]
biodb.INFO [2025-01-18 16:02:25.953][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-01-18 16:02:25.954][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:25.955][biodb::testThat]
biodb.TRACE[2025-01-18 16:02:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.992][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:25.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:25.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:25.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:25.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:25.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.002][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:26.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.029][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:26.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:26.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:26.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:02:26.115][biodb::testThat]
biodb.INFO [2025-01-18 16:02:26.116][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-18 16:02:26.117][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:26.119][biodb::testThat]
biodb.INFO [2025-01-18 16:02:26.131][biodb::testThat]
biodb.INFO [2025-01-18 16:02:26.132][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-18 16:02:26.133][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:26.134][biodb::testThat]
biodb.INFO [2025-01-18 16:02:26.144][biodb::testThat]
biodb.INFO [2025-01-18 16:02:26.146][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-18 16:02:26.147][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:26.148][biodb::testThat]
biodb.DEBUG[2025-01-18 16:02:26.153][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-01-18 16:02:27.574][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2025-01-18 16:02:28.945][biodb::testThat]
biodb.INFO [2025-01-18 16:02:28.947][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-18 16:02:28.948][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:28.949][biodb::testThat]
biodb.INFO [2025-01-18 16:02:28.957][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-18 16:02:28.958][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-01-18 16:02:28.959][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-01-18 16:02:28.961][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-18 16:02:28.962][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:28.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:28.964][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:28.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:28.966][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:28.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-18 16:02:28.980][biodb::testContext]
biodb.INFO [2025-01-18 16:02:28.982][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-18 16:02:28.983][biodb::testContext] Test context - Gene long tests
biodb.INFO [2025-01-18 16:02:28.984][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-18 16:02:28.985][biodb::testContext]
biodb.INFO [2025-01-18 16:02:28.988][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-18 16:02:28.990][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-18 16:02:28.994][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:02:28.995][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-18 16:02:28.996][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-18 16:02:28.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:28.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.001][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-18 16:02:29.002][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-18 16:02:29.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.014][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-18 16:02:29.016][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-18 16:02:29.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.020][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-18 16:02:29.022][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-18 16:02:29.023][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-18 16:02:29.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.028][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-18 16:02:29.029][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-18 16:02:29.031][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-18 16:02:29.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.035][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-18 16:02:29.036][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-18 16:02:29.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.041][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-18 16:02:29.042][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-18 16:02:29.044][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-18 16:02:29.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.048][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-18 16:02:29.050][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-18 16:02:29.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.054][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-18 16:02:29.055][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-18 16:02:29.057][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-18 16:02:29.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.061][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-18 16:02:29.062][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-18 16:02:29.064][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-18 16:02:29.065][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-18 16:02:29.066][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-18 16:02:29.068][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-18 16:02:29.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.072][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-18 16:02:29.073][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-18 16:02:29.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.078][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-18 16:02:29.079][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-18 16:02:29.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.084][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-18 16:02:29.085][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-18 16:02:29.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.089][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-18 16:02:29.091][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-18 16:02:29.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.095][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-18 16:02:29.097][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-18 16:02:29.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.101][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-18 16:02:29.102][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-18 16:02:29.113][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-18 16:02:29.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.118][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-18 16:02:29.119][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-18 16:02:29.120][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-18 16:02:29.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.125][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-18 16:02:29.127][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.128][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-18 16:02:29.130][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.131][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:29.132][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.133][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.135][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.136][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.137][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-18 16:02:29.139][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:29.140][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.141][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-18 16:02:29.142][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:29.144][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.145][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.146][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:02:29.146][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:02:29.146][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:02:29.146][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-18 16:02:29.146][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-18 16:02:29.148][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:02:29.149][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.150][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.151][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:29.157][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.158][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.159][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.161][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.162][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:29.163][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:29.164][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.165][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.167][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-18 16:02:29.169][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.170][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-18 16:02:29.171][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.173][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:29.174][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.175][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.176][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.178][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.179][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-18 16:02:29.180][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:29.181][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.183][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-18 16:02:29.184][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:29.185][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.186][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.188][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:02:29.188][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:02:29.188][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:02:29.188][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-18 16:02:29.188][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-18 16:02:29.189][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:02:29.190][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.191][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.193][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:29.194][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.195][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.196][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.197][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.198][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:29.200][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:29.201][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.202][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.203][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-18 16:02:29.206][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.207][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-18 16:02:29.208][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.209][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:29.210][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.212][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.213][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.214][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.215][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-18 16:02:29.217][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:29.218][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.219][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-18 16:02:29.220][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:29.221][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.223][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.224][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.225][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:02:29.226][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.227][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.229][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:29.230][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.231][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.232][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.233][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.234][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:29.236][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:29.237][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.238][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.239][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-18 16:02:29.241][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.243][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-18 16:02:29.244][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.245][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:29.246][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.248][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.249][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.250][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.251][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-18 16:02:29.253][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:29.254][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.255][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-18 16:02:29.256][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:29.258][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.259][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.260][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.261][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:02:29.263][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.264][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.265][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:29.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.267][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.269][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.270][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.271][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:29.272][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:29.273][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.275][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.276][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:02:29.277][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.379][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-18 16:02:29.381][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-18 16:02:29.382][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-18 16:02:29.384][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-18 16:02:29.386][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-18 16:02:29.388][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-18 16:02:29.390][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-18 16:02:29.392][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-18 16:02:29.393][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-18 16:02:29.395][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-18 16:02:29.397][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-18 16:02:29.399][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-18 16:02:29.401][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-18 16:02:29.402][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-18 16:02:29.404][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-18 16:02:29.406][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-18 16:02:29.408][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-18 16:02:29.410][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-18 16:02:29.411][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-18 16:02:29.413][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-18 16:02:29.419][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-18 16:02:29.421][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-18 16:02:29.423][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-18 16:02:29.425][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-18 16:02:29.427][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-18 16:02:29.429][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-18 16:02:29.431][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-18 16:02:29.432][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-18 16:02:29.434][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-18 16:02:29.436][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-18 16:02:29.438][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-18 16:02:29.440][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-18 16:02:29.441][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-18 16:02:29.443][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-18 16:02:29.445][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-18 16:02:29.447][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-18 16:02:29.449][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-18 16:02:29.450][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-18 16:02:29.452][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-18 16:02:29.454][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-18 16:02:29.456][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-18 16:02:29.458][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-18 16:02:29.460][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-18 16:02:29.461][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-18 16:02:29.463][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-18 16:02:29.465][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-18 16:02:29.467][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-18 16:02:29.469][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-18 16:02:29.470][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-18 16:02:29.472][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-18 16:02:29.474][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-18 16:02:29.476][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-18 16:02:29.478][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-18 16:02:29.480][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-18 16:02:29.481][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-18 16:02:29.483][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-18 16:02:29.485][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-18 16:02:29.487][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-18 16:02:29.489][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-18 16:02:29.490][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-18 16:02:29.492][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-18 16:02:29.494][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-18 16:02:29.496][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-18 16:02:29.498][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-18 16:02:29.500][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-18 16:02:29.502][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-18 16:02:29.504][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-18 16:02:29.506][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-18 16:02:29.507][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-18 16:02:29.509][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-18 16:02:29.511][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-18 16:02:29.513][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-18 16:02:29.515][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-18 16:02:29.517][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-18 16:02:29.518][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-18 16:02:29.520][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-18 16:02:29.522][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-18 16:02:29.524][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-18 16:02:29.526][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-18 16:02:29.528][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-18 16:02:29.530][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-18 16:02:29.531][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-18 16:02:29.533][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-18 16:02:29.535][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-18 16:02:29.537][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-18 16:02:29.538][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:02:29.540][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.542][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:02:29.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:29.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:29.692][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-01-18 16:02:29.694][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-01-18 16:02:29.697][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.699][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-01-18 16:02:29.700][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.702][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:29.703][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.704][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.705][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.706][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.708][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-01-18 16:02:29.709][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:29.710][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.712][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-01-18 16:02:29.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:29.714][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-01-18 16:02:29.714][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-01-18 16:02:29.715][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.716][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.718][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-18 16:02:29.719][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.721][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:29.722][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.723][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.725][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.726][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:29.726][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-01-18 16:02:29.727][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:29.728][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:29.729][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.731][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.732][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-01-18 16:02:29.735][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.736][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-01-18 16:02:29.737][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.738][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:29.739][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.741][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.742][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.743][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.744][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:02:29.746][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:29.747][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.748][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-01-18 16:02:29.750][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:29.751][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-01-18 16:02:29.751][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-01-18 16:02:29.751][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-01-18 16:02:29.751][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-01-18 16:02:29.751][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-01-18 16:02:29.751][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-01-18 16:02:29.752][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.753][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:02:29.755][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-18 16:02:29.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.757][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.758][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:29.759][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.762][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.763][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:02:29.763][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:02:29.764][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:29.765][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:29.766][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.768][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.769][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-01-18 16:02:29.772][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.773][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-01-18 16:02:29.774][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.775][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:29.777][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.778][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.779][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.781][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.782][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:02:29.783][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:29.784][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.786][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-01-18 16:02:29.787][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.788][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:02:29.790][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.791][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:02:29.791][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:02:29.791][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:02:29.792][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-01-18 16:02:29.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.796][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:29.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.799][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.800][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:02:29.800][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:02:29.800][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-01-18 16:02:29.802][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:29.803][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:29.804][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.805][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:02:29.807][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-01-18 16:02:29.809][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.810][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-01-18 16:02:29.812][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.813][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:02:29.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.815][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.821][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.822][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.823][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:02:29.825][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:02:29.826][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.827][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-01-18 16:02:29.828][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:02:29.829][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-01-18 16:02:29.829][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-01-18 16:02:29.831][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:02:29.832][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:02:29.833][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-01-18 16:02:29.834][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.835][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.836][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:02:29.838][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:02:29.839][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:02:29.840][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:02:29.841][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:02:29.841][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:02:29.841][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-01-18 16:02:29.842][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:02:29.843][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:02:29.845][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:02:29.846][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:02:29.847][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-01-18 16:02:29.849][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-18 16:02:29.851][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-18 16:02:29.853][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-01-18 16:02:29.855][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-18 16:02:29.857][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-01-18 16:02:29.866][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2025-01-18 16:02:29.867][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2025-01-18 16:02:29.869][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2025-01-18 16:02:29.870][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-01-18 16:02:29.872][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:29.873][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:29.875][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-01-18 16:02:29.876][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:29.877][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:29.965][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2025-01-18 16:02:29.970][biodb::testThat]
biodb.INFO [2025-01-18 16:02:29.971][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-01-18 16:02:29.973][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:29.974][biodb::testThat]
biodb.TRACE[2025-01-18 16:02:29.980][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2025-01-18 16:02:29.982][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:29.986][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:29.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:29.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:29.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:29.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:29.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:29.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:30.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:30.014][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.018][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.025][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:30.026][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:30.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:30.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:30.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.036][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:30.037][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:30.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.042][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:30.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:30.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.047][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:30.048][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:30.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.051][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.053][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:30.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:30.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.058][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:30.059][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:30.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.062][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:30.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:30.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.069][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:30.071][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:30.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.073][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:30.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:30.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:30.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:30.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:30.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:30.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:30.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:30.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:30.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:30.147][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2025-01-18 16:02:30.149][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:30.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:30.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:30.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:30.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:30.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:30.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:30.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:30.174][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-01-18 16:02:30.251][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-01-18 16:02:30.252][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-01-18 16:02:30.253][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-01-18 16:02:30.276][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-01-18 16:02:30.277][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:30.278][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-01-18 16:02:30.296][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:30.297][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:30.299][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-01-18 16:02:30.300][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:30.301][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-01-18 16:02:30.302][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:30.303][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-18 16:02:30.323][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2025-01-18 16:02:30.324][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2025-01-18 16:02:30.326][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:02:30.329][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2025-01-18 16:02:30.330][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:02:30.332][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:02:30.333][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:30.339][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:30.340][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:02:30.341][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-18 16:02:30.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:30.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:30.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:30.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:30.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:30.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:30.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:30.358][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2025-01-18 16:02:30.361][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:30.362][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:30.364][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2025-01-18 16:02:31.606][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2025-01-18 16:02:32.906][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:32.909][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2025-01-18 16:02:32.914][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2025-01-18 16:02:32.917][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2025-01-18 16:02:32.920][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:02:32.922][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:32.923][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:32.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:32.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:32.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:32.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:32.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:32.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:32.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:32.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:32.961][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:32.962][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:32.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.964][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:32.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:32.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:32.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:32.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:32.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:32.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:32.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:32.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:32.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:33.030][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2025-01-18 16:02:33.031][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.036][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.040][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:33.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:33.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:33.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:33.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:33.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:33.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:33.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.159][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.161][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.178][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.193][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:33.195][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.197][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:33.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.213][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:33.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.218][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.228][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:33.229][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.233][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:33.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.248][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.262][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.267][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.268][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.271][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.272][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.301][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.302][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.304][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.320][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:33.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.335][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:33.336][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:33.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.338][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.340][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:33.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:33.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.354][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:33.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.373][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:33.374][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:33.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.377][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.378][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:33.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:33.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.392][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:33.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.397][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.402][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.407][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:33.408][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.411][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.412][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:33.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.426][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.428][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.430][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.436][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.437][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.440][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.446][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.450][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.455][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:33.457][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:33.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.459][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.465][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.466][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.469][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.475][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:33.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:33.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.478][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.484][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.485][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.488][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.498][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.500][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.511][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2025-01-18 16:02:33.513][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:33.514][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:33.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:33.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:33.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:33.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:33.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:33.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:33.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:33.541][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.544][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.551][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:33.553][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:33.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.555][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.557][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:33.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:33.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.562][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:33.563][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.568][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:33.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:33.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.573][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:33.574][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.576][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.578][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:33.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.583][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:33.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:33.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:33.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:33.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.594][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.595][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.597][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.600][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:33.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:33.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:33.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:33.666][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2025-01-18 16:02:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.674][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:33.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:33.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:33.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:33.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:33.693][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-01-18 16:02:33.694][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2025-01-18 16:02:33.762][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:02:33.784][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2025-01-18 16:02:33.786][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:02:33.787][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:02:33.788][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:33.789][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:33.791][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:02:33.792][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-18 16:02:33.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:33.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:33.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:33.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:33.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:33.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:33.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:33.825][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2025-01-18 16:02:33.829][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:33.830][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:33.832][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2025-01-18 16:02:35.073][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2025-01-18 16:02:36.321][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:36.324][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2025-01-18 16:02:36.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2025-01-18 16:02:36.332][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2025-01-18 16:02:36.343][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:02:36.345][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:36.347][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:36.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:36.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:36.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:36.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:36.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:36.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:36.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.386][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:36.387][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.389][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:36.446][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2025-01-18 16:02:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.475][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:36.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:36.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:36.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:36.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:36.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:36.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:36.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:36.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:36.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.621][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:36.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.636][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:36.637][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.640][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.671][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:36.672][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.676][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.706][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.707][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.746][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.747][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.749][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.781][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:36.782][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:36.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.785][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.800][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:36.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:36.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.816][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:36.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:36.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.819][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.851][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.856][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:36.857][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:36.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.875][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.876][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:36.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.885][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.887][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:36.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.889][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.895][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:36.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:36.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.905][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:36.907][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:36.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.909][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.915][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.916][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:36.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.924][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:36.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:36.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.934][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.936][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:36.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.944][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.946][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:36.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:36.961][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2025-01-18 16:02:37.100][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:37.102][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:37.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:37.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:37.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:37.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:37.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:37.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:37.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:37.137][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.140][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.148][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.149][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.151][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.154][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.159][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:37.160][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.165][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.170][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:37.171][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.173][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.181][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:37.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:37.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.184][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.187][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:37.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.192][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.193][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.195][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:37.261][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2025-01-18 16:02:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:37.292][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-01-18 16:02:37.293][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2025-01-18 16:02:37.295][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:02:37.297][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2025-01-18 16:02:37.299][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:02:37.301][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-01-18 16:02:37.302][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:37.304][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:37.306][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:37.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:37.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:37.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:37.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:37.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:37.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:37.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.345][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:37.347][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:37.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:37.416][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-01-18 16:02:37.418][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.430][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:37.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:37.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:37.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:37.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:37.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:37.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:37.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.569][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.588][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:37.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.595][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.606][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:37.608][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.611][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:37.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.651][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.656][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:37.657][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.660][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.675][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.685][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.690][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.691][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.693][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.695][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.725][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.726][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.728][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.750][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.760][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.762][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.764][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.780][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:37.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:37.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:37.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:37.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.796][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:37.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:37.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.799][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.801][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.821][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.826][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.831][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:37.832][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.835][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.836][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.851][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.853][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:37.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.855][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.862][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.863][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.866][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.872][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.876][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.882][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.884][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.886][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.893][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.894][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:37.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.897][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.903][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:37.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:37.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.907][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.913][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.915][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:37.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.917][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.924][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.925][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:37.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.938][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2025-01-18 16:02:37.940][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:37.941][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:37.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:37.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:37.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:37.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:37.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:37.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:37.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:37.970][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.974][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:37.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.981][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.982][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.985][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:37.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.992][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:37.993][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:37.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:37.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:37.998][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:37.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:38.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.003][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:38.004][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:38.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.008][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:38.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:38.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.014][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:38.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:38.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.017][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:38.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:38.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.024][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:38.026][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:38.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.028][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:38.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:38.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:38.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:38.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:38.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:38.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:38.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:38.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:38.092][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2025-01-18 16:02:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:38.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:38.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:38.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:38.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:38.120][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-01-18 16:02:38.121][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2025-01-18 16:02:38.122][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:02:38.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2025-01-18 16:02:38.126][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:02:38.127][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:02:38.128][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:38.130][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:38.131][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:02:38.137][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-18 16:02:38.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:38.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:38.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:38.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:38.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:38.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:38.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:38.157][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2025-01-18 16:02:38.160][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:38.162][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:38.163][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2025-01-18 16:02:39.520][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2025-01-18 16:02:40.891][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:40.893][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2025-01-18 16:02:40.898][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2025-01-18 16:02:40.902][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2025-01-18 16:02:40.905][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:02:40.907][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:40.908][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:40.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:40.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:40.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:40.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:40.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:40.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:40.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:40.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:40.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.947][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:40.948][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:40.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.950][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:40.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:40.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:40.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:41.007][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2025-01-18 16:02:41.008][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.018][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.023][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:41.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:41.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:41.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.038][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:41.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:41.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.176][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.180][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.196][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:41.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.207][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.212][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:41.214][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:41.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.242][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.247][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:41.249][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.268][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.273][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.283][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.284][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.288][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.318][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.319][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.321][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.344][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.354][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:41.355][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:41.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.358][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.374][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:41.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:41.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.399][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:41.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:41.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.403][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.404][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:41.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:41.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.433][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:41.435][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.437][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.438][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:41.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.453][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.454][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.457][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.463][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.464][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.467][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.473][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.477][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.483][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:41.485][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:41.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.494][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.495][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.497][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:41.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:41.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.507][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.514][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.515][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.524][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.525][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.528][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.544][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2025-01-18 16:02:41.545][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:41.547][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:41.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:41.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:41.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:41.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:41.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:41.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:41.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:41.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.601][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.609][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:41.611][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:41.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.621][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:41.623][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.625][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.628][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:41.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.633][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:41.634][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.637][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:41.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.644][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:41.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:41.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.648][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.656][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.658][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.666][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:41.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:41.734][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2025-01-18 16:02:41.736][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:41.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:41.761][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-01-18 16:02:41.762][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2025-01-18 16:02:41.763][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:02:41.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2025-01-18 16:02:41.767][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:02:41.768][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:02:41.770][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:41.771][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:41.772][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:02:41.773][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-18 16:02:41.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:41.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:41.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:41.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:41.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:41.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:41.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:41.791][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2025-01-18 16:02:41.794][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:41.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:41.797][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2025-01-18 16:02:43.053][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2025-01-18 16:02:44.324][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:44.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2025-01-18 16:02:44.332][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2025-01-18 16:02:44.335][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2025-01-18 16:02:44.338][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:02:44.340][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:44.341][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:44.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:44.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:44.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:44.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:44.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:44.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:44.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.388][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:44.389][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:44.466][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2025-01-18 16:02:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.478][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:44.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:44.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:44.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:44.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:44.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:44.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:44.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:44.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:44.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:44.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.672][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.691][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:44.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.706][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:44.708][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:44.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.741][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:44.743][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:44.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.761][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.771][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.776][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.778][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.780][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.781][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.812][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.813][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:44.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:44.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:44.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.848][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:44.849][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:44.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.869][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:44.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:44.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.884][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:44.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:44.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.888][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:44.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.905][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:44.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.910][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.915][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.920][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:44.922][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.924][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.941][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.942][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:44.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.945][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.951][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.953][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:44.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.955][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:44.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:44.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.966][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.973][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:44.974][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:44.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.983][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.984][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:44.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.987][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:44.993][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:44.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:44.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:44.997][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.004][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.005][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.015][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.021][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:45.023][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:45.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.034][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2025-01-18 16:02:45.035][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:45.037][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:45.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:45.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:45.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:45.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:45.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:45.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:45.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:45.061][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.065][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.071][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:45.073][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:45.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.075][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.077][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:45.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.082][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:45.083][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:45.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.085][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.092][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:45.094][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:45.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.096][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.103][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:45.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:45.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.106][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.113][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:45.115][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:45.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:45.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:45.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:45.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:45.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:45.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:45.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:45.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:45.180][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2025-01-18 16:02:45.183][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:45.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:45.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:45.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:45.207][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-01-18 16:02:45.208][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2025-01-18 16:02:45.210][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:02:45.212][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2025-01-18 16:02:45.213][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:02:45.214][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:02:45.216][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:45.217][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:45.218][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:02:45.219][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-18 16:02:45.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:45.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:45.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:45.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:45.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:45.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:45.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:45.236][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2025-01-18 16:02:45.240][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:45.241][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:45.243][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2025-01-18 16:02:46.592][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2025-01-18 16:02:47.913][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:47.916][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2025-01-18 16:02:47.921][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2025-01-18 16:02:47.925][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2025-01-18 16:02:47.927][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:02:47.929][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:47.930][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:47.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:47.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:47.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:47.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:47.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:47.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:47.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:47.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:47.973][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:47.974][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:47.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:47.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:47.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:47.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:47.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:47.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:47.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:47.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:47.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:47.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:47.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:48.033][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2025-01-18 16:02:48.034][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.039][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.044][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:48.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:48.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.063][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:48.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:48.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.161][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.172][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.203][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:48.204][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.236][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:48.238][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.240][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.270][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.271][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.273][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.304][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.305][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.307][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.323][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:48.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:48.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:48.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.338][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:48.339][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:48.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.342][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:48.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:48.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:48.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:48.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.372][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:48.373][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:48.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.376][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.377][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:48.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:48.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.397][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.401][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.406][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:48.408][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.411][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:48.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.426][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.427][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.429][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.436][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.437][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.439][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.445][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.455][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:48.457][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:48.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.459][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.465][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.467][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.469][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.475][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:48.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:48.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.479][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.485][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.487][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.489][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.495][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.497][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.508][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2025-01-18 16:02:48.509][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:48.511][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:48.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:48.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:48.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:48.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:48.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:48.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:48.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:48.536][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.547][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:48.548][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:48.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.550][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.552][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:48.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:48.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.557][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:48.559][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.568][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:48.569][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.572][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:48.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:48.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.579][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:48.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:48.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.582][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:48.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.589][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.590][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.593][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.595][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:48.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:48.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:48.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:48.661][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2025-01-18 16:02:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:48.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:48.687][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-01-18 16:02:48.689][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2025-01-18 16:02:48.690][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:02:48.692][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2025-01-18 16:02:48.693][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:02:48.695][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:02:48.696][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:48.697][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:02:48.699][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:02:48.700][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-18 16:02:48.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:48.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:48.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:48.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:48.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:48.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:48.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:02:48.717][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2025-01-18 16:02:48.720][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:48.721][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:48.723][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2025-01-18 16:02:50.090][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2025-01-18 16:02:51.416][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:51.418][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2025-01-18 16:02:51.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2025-01-18 16:02:51.426][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2025-01-18 16:02:51.428][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:02:51.430][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:51.431][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-01-18 16:02:51.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:51.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:51.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:51.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:51.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:51.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:51.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.471][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:51.472][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:51.531][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2025-01-18 16:02:51.532][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.537][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:51.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:51.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:51.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.656][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:51.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.690][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:51.692][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.695][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:51.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.710][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:51.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.715][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.720][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.725][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:51.726][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.729][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.730][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.745][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.751][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.756][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.761][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.762][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.764][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.766][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.805][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.806][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.809][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:51.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:51.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:51.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.840][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:51.841][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:51.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:51.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:51.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.874][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:51.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:51.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.878][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:51.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:51.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.894][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:51.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.899][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.909][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:51.910][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.912][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-01-18 16:02:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.928][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.930][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:51.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.932][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.938][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.939][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:51.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.942][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.948][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:51.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:51.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.952][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.958][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:51.959][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:51.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.961][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.967][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.969][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:51.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.971][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.977][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:51.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:51.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.981][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.988][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.989][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:51.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:51.991][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:51.998][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:51.999][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:52.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.002][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.008][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2025-01-18 16:02:52.010][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:02:52.011][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:52.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:52.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:52.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:52.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:52.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:52.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:52.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:52.029][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.033][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.039][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:52.040][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.043][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:52.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.049][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:52.051][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:52.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.055][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:52.056][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.060][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.065][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:52.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:52.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.068][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.070][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:52.071][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:52.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.074][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:52.126][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2025-01-18 16:02:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:52.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:52.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:52.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:52.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.262][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.266][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:52.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.296][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:52.297][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.300][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.301][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:52.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.342][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:52.345][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:52.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.349][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.380][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:52.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:52.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.388][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.399][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:52.401][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:52.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.405][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:52.416][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.418][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:52.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:52.423][ef$get] fields variable is a list.
biodb.INFO [2025-01-18 16:02:52.436][biodb::testThat]
biodb.INFO [2025-01-18 16:02:52.437][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-18 16:02:52.438][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:52.439][biodb::testThat]
biodb.DEBUG[2025-01-18 16:02:52.442][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2025-01-18 16:02:52.444][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2025-01-18 16:02:52.446][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.INFO [2025-01-18 16:02:52.447][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8" for "ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8".
biodb.TRACE[2025-01-18 16:02:52.450][cch$loadFileContent] file.exist = [8]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE".
biodb.TRACE[2025-01-18 16:02:52.452][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:02:52.453][conn$getEntryContent] 0 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:02:52.454][conn$getEntryContent] 8 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:02:52.456][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:02:52.457][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:02:52.458][private$retrieveContents] Get entry content(s) for 8 id(s)...
biodb.DEBUG[2025-01-18 16:02:52.466][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.DEBUG[2025-01-18 16:02:52.469][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:52.471][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:52.472][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.TRACE[2025-01-18 16:02:52.546][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml does not exist.
biodb.TRACE[2025-01-18 16:02:52.547][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:02:52.548][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:02:52.550][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml).
biodb.TRACE[2025-01-18 16:02:53.786][private$doSaveContentToFile] Saving to cache [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml"
biodb.DEBUG[2025-01-18 16:02:53.832][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:02:53.834][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2025-01-18 16:02:53.835][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2025-01-18 16:02:53.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:53.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:53.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:53.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:53.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:53.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:53.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:53.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:53.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:53.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.868][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:53.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:53.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.875][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:53.876][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.885][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:53.887][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:53.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.889][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.891][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:53.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:53.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.896][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:53.897][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:53.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:53.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.906][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:53.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.910][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.912][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:53.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.917][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:53.919][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:53.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.921][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.924][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:53.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:53.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:53.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:53.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:53.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:53.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:53.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:53.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:53.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:53.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:53.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:53.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:53.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:53.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:53.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:54.001][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.002][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.004][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.011][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.013][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.015][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.022][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.024][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.026][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.028][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.033][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.034][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.037][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.039][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.044][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.045][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.047][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.050][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.055][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.056][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:54.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:54.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:54.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:54.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:54.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:54.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:54.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:54.150][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.162][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.163][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.165][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.173][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.214][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.219][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.224][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.226][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.228][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.236][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.240][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.243][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.248][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.250][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.256][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:54.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:54.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:54.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:54.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:54.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:54.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:54.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:54.335][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.347][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.348][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.358][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.360][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.362][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.369][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.371][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.373][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.375][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.380][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.384][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.391][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.392][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.395][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:54.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:54.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:54.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:54.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:54.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:54.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:54.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:54.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.497][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.505][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.506][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.517][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.518][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.520][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.528][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.530][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.535][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.540][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.543][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.546][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.552][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.553][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.555][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:54.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:54.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:54.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:54.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:54.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:54.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:54.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:54.639][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.643][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.649][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.651][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.660][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.661][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.671][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.672][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.677][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.682][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.685][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.687][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.692][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.693][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.696][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:54.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:54.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:54.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:54.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:54.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:54.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:54.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:54.786][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.790][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.797][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.799][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.801][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.803][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.808][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.809][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.811][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.818][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.820][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.822][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.824][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.829][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.840][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.841][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.844][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:54.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:54.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:02:54.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:02:54.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:02:54.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:02:54.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:02:54.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:02:54.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:02:54.910][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.914][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.920][ef$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.921][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.924][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-01-18 16:02:54.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-01-18 16:02:54.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.930][ef$get] Asked field names are: location.
biodb.TRACE[2025-01-18 16:02:54.932][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-01-18 16:02:54.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.934][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.935][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.939][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.941][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.943][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-01-18 16:02:54.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-01-18 16:02:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.948][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-01-18 16:02:54.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:54.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.952][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.953][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.954][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-01-18 16:02:54.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.957][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-01-18 16:02:54.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:02:55.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:02:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:55.112][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2025-01-18 16:02:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:02:55.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:02:55.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:02:55.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:02:55.282][biodb::testThat]
biodb.INFO [2025-01-18 16:02:55.284][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-18 16:02:55.285][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:55.286][biodb::testThat]
biodb.TRACE[2025-01-18 16:02:55.289][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:55.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:55.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.293][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:55.295][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2025-01-18 16:02:55.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:55.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:55.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:55.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:55.329][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2025-01-18 16:02:55.336][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-01-18 16:02:55.340][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:02:55.342][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:02:55.344][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2025-01-18 16:02:55.402][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2025-01-18 16:02:55.404][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:02:55.405][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:02:55.407][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2025-01-18 16:02:55.473][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:02:55.476][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2025-01-18 16:02:55.481][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2025-01-18 16:02:55.483][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2025-01-18 16:02:55.502][biodb::testThat]
biodb.INFO [2025-01-18 16:02:55.503][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-01-18 16:02:55.504][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:55.505][biodb::testThat]
biodb.TRACE[2025-01-18 16:02:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:55.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:02:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:02:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:55.568][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-01-18 16:02:55.572][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:02:55.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-01-18 16:02:55.575][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:02:55.577][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2025-01-18 16:02:55.597][biodb::testThat]
biodb.INFO [2025-01-18 16:02:55.598][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-01-18 16:02:55.599][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:55.600][biodb::testThat]
biodb.TRACE[2025-01-18 16:02:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:55.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:55.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:55.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:02:55.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:02:55.637][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2025-01-18 16:02:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.643][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.648][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:55.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:55.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:55.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:55.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.663][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:55.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:55.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.668][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:55.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:55.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.674][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:02:55.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:55.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:55.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:02:55.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:02:55.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:02:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:02:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:02:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:02:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:02:55.710][biodb::testThat]
biodb.INFO [2025-01-18 16:02:55.711][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-18 16:02:55.712][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:55.714][biodb::testThat]
biodb.INFO [2025-01-18 16:02:55.728][biodb::testThat]
biodb.INFO [2025-01-18 16:02:55.729][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-18 16:02:55.730][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:55.732][biodb::testThat]
biodb.INFO [2025-01-18 16:02:55.741][biodb::testThat]
biodb.INFO [2025-01-18 16:02:55.743][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-18 16:02:55.744][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:02:55.745][biodb::testThat]
biodb.DEBUG[2025-01-18 16:02:55.750][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2025-01-18 16:02:58.411][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2025-01-18 16:03:01.274][biodb::testThat]
biodb.INFO [2025-01-18 16:03:01.275][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-18 16:03:01.276][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:01.277][biodb::testThat]
biodb.INFO [2025-01-18 16:03:01.285][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-18 16:03:01.286][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2025-01-18 16:03:01.288][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2025-01-18 16:03:01.289][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-01-18 16:03:01.300][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-01-18 16:03:01.301][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-18 16:03:01.302][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.304][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.306][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-18 16:03:01.312][biodb::testContext]
biodb.INFO [2025-01-18 16:03:01.313][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-18 16:03:01.314][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2025-01-18 16:03:01.315][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-18 16:03:01.317][biodb::testContext]
biodb.INFO [2025-01-18 16:03:01.319][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-18 16:03:01.321][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-18 16:03:01.325][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:03:01.327][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-18 16:03:01.328][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-18 16:03:01.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.343][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-18 16:03:01.345][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-18 16:03:01.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.349][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-18 16:03:01.350][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-18 16:03:01.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.355][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-18 16:03:01.356][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-18 16:03:01.357][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-18 16:03:01.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.362][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-18 16:03:01.363][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-18 16:03:01.364][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-18 16:03:01.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.368][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-18 16:03:01.370][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-18 16:03:01.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.374][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-18 16:03:01.375][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-18 16:03:01.377][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-18 16:03:01.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.381][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-18 16:03:01.382][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-18 16:03:01.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.387][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-18 16:03:01.388][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-18 16:03:01.389][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-18 16:03:01.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.394][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-18 16:03:01.395][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-18 16:03:01.396][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-18 16:03:01.397][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-18 16:03:01.398][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-18 16:03:01.400][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-18 16:03:01.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.404][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-18 16:03:01.405][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-18 16:03:01.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.410][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-18 16:03:01.411][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-18 16:03:01.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.415][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-18 16:03:01.417][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-18 16:03:01.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.421][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-18 16:03:01.423][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-18 16:03:01.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.427][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-18 16:03:01.428][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-18 16:03:01.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.433][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-18 16:03:01.434][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-18 16:03:01.444][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-18 16:03:01.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.449][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-18 16:03:01.450][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-18 16:03:01.452][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-18 16:03:01.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.456][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-18 16:03:01.458][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.460][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-18 16:03:01.461][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.462][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:01.463][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.465][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.466][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.467][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.468][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-18 16:03:01.469][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:01.471][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.472][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-18 16:03:01.473][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:01.474][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.476][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.477][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:03:01.477][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:03:01.477][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:03:01.477][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-18 16:03:01.477][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-18 16:03:01.478][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:03:01.479][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:01.480][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:01.482][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:01.483][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:01.484][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:01.485][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.486][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.488][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:01.489][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:01.490][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.491][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.493][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-18 16:03:01.495][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.496][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-18 16:03:01.497][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.498][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:01.500][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.501][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.502][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.503][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.505][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-18 16:03:01.506][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:01.507][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.508][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-18 16:03:01.510][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:01.511][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.512][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.513][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:03:01.513][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:03:01.513][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:03:01.513][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-18 16:03:01.513][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-18 16:03:01.515][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:03:01.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:01.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:01.518][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:01.519][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:01.520][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:01.522][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.523][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.524][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:01.525][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:01.526][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.528][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.529][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-18 16:03:01.531][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.533][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-18 16:03:01.534][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.535][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:01.537][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.538][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.539][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.540][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.542][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-18 16:03:01.543][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:01.544][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.545][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-18 16:03:01.547][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:01.548][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.549][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.550][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.552][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:03:01.553][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:01.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:01.555][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:01.556][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:01.558][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:01.559][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.560][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.561][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:01.562][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:01.564][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.565][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.566][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-18 16:03:01.569][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.570][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-18 16:03:01.571][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.573][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:01.574][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.575][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.577][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.578][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.579][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-18 16:03:01.580][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:01.582][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.583][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-18 16:03:01.584][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:01.586][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.587][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.589][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.590][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:03:01.592][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:01.593][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:01.595][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:01.596][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:01.597][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:01.598][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.599][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.601][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:01.602][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:01.603][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:01.604][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:01.606][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:03:01.607][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.701][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-18 16:03:01.703][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-18 16:03:01.704][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-18 16:03:01.706][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-18 16:03:01.708][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-18 16:03:01.710][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-18 16:03:01.711][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-18 16:03:01.713][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-18 16:03:01.714][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-18 16:03:01.716][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-18 16:03:01.718][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-18 16:03:01.719][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-18 16:03:01.721][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-18 16:03:01.723][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-18 16:03:01.724][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-18 16:03:01.726][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-18 16:03:01.728][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-18 16:03:01.729][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-18 16:03:01.731][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-18 16:03:01.733][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-18 16:03:01.735][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-18 16:03:01.736][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-18 16:03:01.738][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-18 16:03:01.740][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-18 16:03:01.741][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-18 16:03:01.743][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-18 16:03:01.745][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-18 16:03:01.746][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-18 16:03:01.748][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-18 16:03:01.750][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-18 16:03:01.751][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-18 16:03:01.753][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-18 16:03:01.755][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-18 16:03:01.756][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-18 16:03:01.758][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-18 16:03:01.760][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-18 16:03:01.761][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-18 16:03:01.763][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-18 16:03:01.765][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-18 16:03:01.766][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-18 16:03:01.768][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-18 16:03:01.775][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-18 16:03:01.777][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-18 16:03:01.778][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-18 16:03:01.780][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-18 16:03:01.782][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-18 16:03:01.783][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-18 16:03:01.785][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-18 16:03:01.787][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-18 16:03:01.788][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-18 16:03:01.790][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-18 16:03:01.791][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-18 16:03:01.793][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-18 16:03:01.795][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-18 16:03:01.796][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-18 16:03:01.798][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-18 16:03:01.800][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-18 16:03:01.801][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-18 16:03:01.803][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-18 16:03:01.805][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-18 16:03:01.806][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-18 16:03:01.808][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-18 16:03:01.810][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-18 16:03:01.811][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-18 16:03:01.813][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-18 16:03:01.815][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-18 16:03:01.816][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-18 16:03:01.818][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-18 16:03:01.820][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-18 16:03:01.821][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-18 16:03:01.823][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-18 16:03:01.825][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-18 16:03:01.826][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-18 16:03:01.828][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-18 16:03:01.829][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-18 16:03:01.831][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-18 16:03:01.833][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-18 16:03:01.834][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-18 16:03:01.836][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-18 16:03:01.838][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-18 16:03:01.839][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-18 16:03:01.841][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-18 16:03:01.843][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-18 16:03:01.845][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-18 16:03:01.846][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-18 16:03:01.848][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:03:01.849][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.851][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:01.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:01.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:01.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:01.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:01.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:01.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:01.982][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-01-18 16:03:01.984][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-01-18 16:03:01.986][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.988][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-01-18 16:03:01.989][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.990][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:01.991][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.992][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.994][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:01.995][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:01.996][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-01-18 16:03:01.997][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:01.998][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.000][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-01-18 16:03:02.001][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:02.002][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-01-18 16:03:02.002][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-01-18 16:03:02.003][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:02.005][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:02.006][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-18 16:03:02.007][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:02.008][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:02.009][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:02.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:02.011][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:02.013][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.014][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:03:02.014][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-01-18 16:03:02.015][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:02.016][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:02.017][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.018][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:02.020][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-01-18 16:03:02.022][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.023][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-01-18 16:03:02.025][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.026][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:02.027][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.028][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.029][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.031][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.032][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:03:02.033][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:02.034][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.036][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-01-18 16:03:02.037][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:02.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-01-18 16:03:02.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-01-18 16:03:02.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-01-18 16:03:02.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-01-18 16:03:02.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-01-18 16:03:02.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-01-18 16:03:02.039][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:02.040][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:03:02.042][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-18 16:03:02.043][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:02.044][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:02.045][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:02.046][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:02.047][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:02.048][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.050][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:02.050][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:03:02.051][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:02.052][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:02.053][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.054][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:02.056][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-01-18 16:03:02.058][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:02.059][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-01-18 16:03:02.061][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.062][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:02.063][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.064][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.065][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.067][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.068][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:03:02.069][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:02.070][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.072][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-01-18 16:03:02.073][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.074][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:02.076][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:02.077][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:03:02.077][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:03:02.077][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:03:02.078][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-01-18 16:03:02.079][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:02.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:02.082][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:02.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:02.084][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:02.085][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.086][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:02.086][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:03:02.086][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-01-18 16:03:02.088][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:02.089][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:02.090][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.091][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:03:02.093][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-01-18 16:03:02.095][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.096][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-01-18 16:03:02.098][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.099][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:02.100][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.101][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.103][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.104][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.105][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:03:02.106][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:02.108][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.109][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-01-18 16:03:02.110][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:02.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-01-18 16:03:02.111][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-01-18 16:03:02.113][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:02.114][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:02.115][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-01-18 16:03:02.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:02.117][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:02.118][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:02.120][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:02.121][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:02.122][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:02.123][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:02.123][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:03:02.123][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-01-18 16:03:02.124][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:02.125][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:02.127][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:02.128][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:03:02.130][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-01-18 16:03:02.131][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-18 16:03:02.133][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-18 16:03:02.135][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-01-18 16:03:02.137][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-18 16:03:02.139][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-01-18 16:03:02.147][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2025-01-18 16:03:02.149][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2025-01-18 16:03:02.150][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2025-01-18 16:03:02.152][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-01-18 16:03:02.153][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-01-18 16:03:02.155][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-01-18 16:03:02.156][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-01-18 16:03:02.158][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-01-18 16:03:02.159][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-01-18 16:03:02.160][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:03:02.166][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2025-01-18 16:03:02.171][biodb::testThat]
biodb.INFO [2025-01-18 16:03:02.172][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-01-18 16:03:02.174][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:02.175][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:02.178][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2025-01-18 16:03:02.180][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:02.183][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:02.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:02.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:02.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:02.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:02.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:02.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:02.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:02.209][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.213][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.219][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.220][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.223][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.229][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.230][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.233][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.239][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.241][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.249][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.251][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.253][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.259][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.261][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.263][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.269][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:02.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.273][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:02.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:02.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.283][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:02.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:02.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:02.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:02.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.293][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:02.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:02.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:02.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:02.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:02.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:02.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.310][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:02.311][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:02.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.313][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:02.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:02.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.320][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:02.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.330][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.331][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.333][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.340][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.341][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:02.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.379][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:02.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.394][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:02.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.408][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:02.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:02.476][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2025-01-18 16:03:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.483][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:02.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:02.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:02.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:02.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.498][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:02.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:02.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.503][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:02.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:02.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:02.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:02.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:02.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.602][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:02.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:02.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:02.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.642][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:02.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:02.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:02.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.676][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:02.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.680][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:02.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:02.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:02.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:02.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:02.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:02.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.711][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:02.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:02.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.714][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:02.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:02.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:02.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.736][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.741][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:02.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:02.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.746][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:02.747][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:02.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.750][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.751][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:02.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:02.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.766][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.782][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.783][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.786][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:02.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.817][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.818][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.820][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:02.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.852][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.854][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.856][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:02.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.888][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.889][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:02.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.923][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.924][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:02.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.959][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.960][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.962][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:02.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.994][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.996][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:02.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:02.998][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:02.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:03.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:03.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:03.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:03.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.029][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:03.031][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:03.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.033][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.072][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.075][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:03.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:03.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:03.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:03.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:03.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:03.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.129][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.135][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.136][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.139][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.145][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.146][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.155][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.159][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.165][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.167][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.169][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.176][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.177][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.179][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.186][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:03.188][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:03.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.190][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:03.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:03.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.200][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.207][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.211][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.218][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:03.219][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:03.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.222][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.228][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.242][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.248][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:03.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:03.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.258][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.260][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.262][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.268][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.269][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.272][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.279][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2025-01-18 16:03:03.280][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:03.282][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:03.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:03.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:03.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:03.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:03.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:03.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:03.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:03.298][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.302][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.309][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.310][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.312][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.319][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.320][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.329][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.331][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.333][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.340][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.341][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.350][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.351][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.354][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.360][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:03.362][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.364][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.371][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:03.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:03.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.374][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:03.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:03.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.381][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:03.382][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:03.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.385][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:03.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:03.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.391][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.395][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.402][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:03.403][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:03.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.406][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.407][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:03.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:03.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.412][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:03.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.416][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:03.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.423][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.424][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.427][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.433][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.435][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.437][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.475][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:03.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:03.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.490][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.505][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:03.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:03.615][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2025-01-18 16:03:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.622][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:03.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:03.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:03.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:03.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:03.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:03.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:03.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:03.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:03.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:03.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.749][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.784][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:03.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.820][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.824][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:03.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:03.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:03.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.855][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:03.856][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:03.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.858][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.884][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:03.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:03.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.889][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:03.891][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:03.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.894][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:03.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.924][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.925][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.958][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.959][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.962][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:03.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:03.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:03.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:03.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:04.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:04.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:04.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:04.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:04.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:04.039][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:04.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.041][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:04.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:04.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.071][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.072][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.075][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.105][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.106][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.139][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.140][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.143][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.174][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.175][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.209][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.210][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.212][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:04.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:04.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:04.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.243][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:04.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:04.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.247][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:04.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:04.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.263][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.267][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.273][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.274][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.277][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.283][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.284][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.293][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.294][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.297][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.303][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.304][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.307][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.313][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.314][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.317][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:04.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:04.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.327][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:04.335][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:04.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.337][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.347][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.353][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:04.355][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:04.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.357][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:04.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:04.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:04.375][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:04.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.377][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:04.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:04.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.394][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:04.395][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:04.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.397][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.404][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:04.405][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:04.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.408][ef$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:04.418][biodb::testThat]
biodb.INFO [2025-01-18 16:03:04.419][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-18 16:03:04.420][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:04.421][biodb::testThat]
biodb.DEBUG[2025-01-18 16:03:04.424][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2025-01-18 16:03:04.426][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-01-18 16:03:04.429][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.INFO [2025-01-18 16:03:04.431][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75" for "ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75".
biodb.TRACE[2025-01-18 16:03:04.433][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:04.434][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:04.435][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:04.437][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:04.438][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:04.439][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:04.441][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-01-18 16:03:04.443][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML".
biodb.DEBUG[2025-01-18 16:03:04.446][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:04.448][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:04.449][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML".
biodb.TRACE[2025-01-18 16:03:04.540][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML).
biodb.TRACE[2025-01-18 16:03:04.668][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml"
biodb.DEBUG[2025-01-18 16:03:04.674][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:04.676][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-01-18 16:03:04.677][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:04.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:04.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:04.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:04.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:04.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:04.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:04.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:04.694][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.697][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.704][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.705][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.707][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.714][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.715][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.724][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.725][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.727][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.734][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.735][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.738][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.744][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.746][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.748][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.754][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:04.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:04.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.758][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.760][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:04.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:04.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:04.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:04.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.768][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:04.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:04.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:04.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:04.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.778][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:04.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:04.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:04.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.795][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:04.796][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:04.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.798][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.800][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:04.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:04.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.805][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:04.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:04.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.808][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.815][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:04.816][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:04.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.819][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:04.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:04.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.825][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:04.826][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:04.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.829][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:04.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.835][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:04.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.850][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.864][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:04.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:04.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.879][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:04.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.893][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:04.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:04.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:04.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:04.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:04.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:04.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:04.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:04.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:04.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:04.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:04.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:04.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:04.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:04.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:04.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:04.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:04.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.965][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:04.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.972][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.973][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.975][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:04.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.982][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.983][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.985][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:04.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.992][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.993][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:04.995][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:04.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:04.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.002][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.003][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.005][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.012][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.013][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.016][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.022][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:05.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:05.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.026][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.027][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:05.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.032][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:05.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:05.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:05.043][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:05.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.046][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:05.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:05.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:05.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:05.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.056][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:05.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:05.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.062][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:05.064][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:05.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.066][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:05.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:05.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.072][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:05.074][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:05.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.076][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:05.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:05.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.082][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:05.084][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:05.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.086][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:05.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:05.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.093][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:05.099][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:05.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.102][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:05.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.108][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:05.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:05.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:05.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:05.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:05.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:05.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.166][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:05.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:05.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:05.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:05.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:05.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:05.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:05.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:05.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:05.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:05.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:05.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:05.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:05.249][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2025-01-18 16:03:05.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:03:05.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:03:05.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:03:05.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:03:05.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:03:05.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:03:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:03:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:03:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:03:05.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:03:05.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:03:05.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:03:05.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:05.293][biodb::testThat]
biodb.INFO [2025-01-18 16:03:05.295][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-18 16:03:05.296][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:05.297][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:05.300][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:05.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:05.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.304][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:05.306][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2025-01-18 16:03:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:05.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:05.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:05.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:05.338][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2025-01-18 16:03:05.346][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-01-18 16:03:05.350][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:05.351][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:05.353][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10".
biodb.TRACE[2025-01-18 16:03:05.410][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10 does not exist.
biodb.TRACE[2025-01-18 16:03:05.411][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:05.413][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:05.415][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10).
biodb.DEBUG[2025-01-18 16:03:05.489][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:05.491][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content"
biodb.TRACE[2025-01-18 16:03:05.496][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.request"
biodb.DEBUG[2025-01-18 16:03:05.499][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2025-01-18 16:03:05.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:05.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:05.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.518][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.519][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:05.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:05.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.523][ef$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:05.528][biodb::testThat]
biodb.INFO [2025-01-18 16:03:05.530][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-01-18 16:03:05.531][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:05.532][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:05.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:05.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:05.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:05.599][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-01-18 16:03:05.603][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:05.605][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-01-18 16:03:05.607][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:05.608][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2025-01-18 16:03:05.628][biodb::testThat]
biodb.INFO [2025-01-18 16:03:05.629][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-01-18 16:03:05.631][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:05.632][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:05.644][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:05.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:05.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:05.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:05.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:05.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.676][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:05.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:05.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:05.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:05.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:05.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.692][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:05.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:05.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:05.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:05.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:05.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.712][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:05.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:05.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:05.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:05.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:05.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:05.729][biodb::testThat]
biodb.INFO [2025-01-18 16:03:05.730][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-18 16:03:05.731][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:05.733][biodb::testThat]
biodb.INFO [2025-01-18 16:03:05.743][biodb::testThat]
biodb.INFO [2025-01-18 16:03:05.744][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-18 16:03:05.745][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:05.747][biodb::testThat]
biodb.INFO [2025-01-18 16:03:05.758][biodb::testThat]
biodb.INFO [2025-01-18 16:03:05.759][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-18 16:03:05.760][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:05.761][biodb::testThat]
biodb.DEBUG[2025-01-18 16:03:05.766][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2025-01-18 16:03:05.898][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2025-01-18 16:03:06.039][biodb::testThat]
biodb.INFO [2025-01-18 16:03:06.041][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-18 16:03:06.042][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:06.043][biodb::testThat]
biodb.DEBUG[2025-01-18 16:03:06.115][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2025-01-18 16:03:06.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:06.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:06.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.181][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:06.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.186][ef$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:06.188][biodb::testThat]
biodb.INFO [2025-01-18 16:03:06.189][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-01-18 16:03:06.190][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:06.191][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:06.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:06.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:06.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:06.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:06.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:06.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:06.337][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-01-18 16:03:06.341][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:06.343][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-01-18 16:03:06.344][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:06.346][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-01-18 16:03:06.440][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-01-18 16:03:06.456][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:06.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-01-18 16:03:06.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:06.461][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2025-01-18 16:03:06.478][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:06.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:06.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:06.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:06.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:06.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:06.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:06.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:06.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:06.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:06.527][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:06.529][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:06.550][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:06.618][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:06.619][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:06.621][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:06.623][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:06.866][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:06.869][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content"
biodb.TRACE[2025-01-18 16:03:06.874][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.request"
biodb.DEBUG[2025-01-18 16:03:06.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-01-18 16:03:06.897][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:06.898][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:06.900][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2025-01-18 16:03:06.956][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2025-01-18 16:03:06.958][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:06.960][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:06.962][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2025-01-18 16:03:07.164][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:07.167][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content"
biodb.TRACE[2025-01-18 16:03:07.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.request"
biodb.DEBUG[2025-01-18 16:03:07.641][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-01-18 16:03:07.645][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:07.646][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:07.648][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2025-01-18 16:03:07.705][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2025-01-18 16:03:07.706][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:07.708][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:07.710][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2025-01-18 16:03:08.025][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:08.028][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content"
biodb.TRACE[2025-01-18 16:03:08.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.request"
biodb.DEBUG[2025-01-18 16:03:08.061][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-01-18 16:03:08.065][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:08.067][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:08.069][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2025-01-18 16:03:08.127][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2025-01-18 16:03:08.128][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:08.130][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:08.132][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2025-01-18 16:03:08.215][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:08.218][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content"
biodb.TRACE[2025-01-18 16:03:08.223][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.request"
biodb.TRACE[2025-01-18 16:03:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:08.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:08.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:08.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:08.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:08.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:08.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:08.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:08.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:08.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:08.276][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:08.280][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:08.282][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:08.284][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:08.344][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:08.345][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:08.347][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:08.349][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:08.621][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:08.623][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content"
biodb.TRACE[2025-01-18 16:03:08.663][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.request"
biodb.DEBUG[2025-01-18 16:03:08.683][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-01-18 16:03:08.687][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:08.689][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:08.691][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2025-01-18 16:03:08.750][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2025-01-18 16:03:08.752][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:08.754][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:08.756][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.INFO [2025-01-18 16:03:08.817][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000". Retrying connection to server...
biodb.DEBUG[2025-01-18 16:03:08.818][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:08.819][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:08.822][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2025-01-18 16:03:08.880][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2025-01-18 16:03:08.881][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:08.883][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:08.885][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.INFO [2025-01-18 16:03:08.947][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000". Retrying connection to server...
biodb.DEBUG[2025-01-18 16:03:08.949][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:08.950][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:08.952][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2025-01-18 16:03:09.025][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2025-01-18 16:03:09.027][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:09.029][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:09.030][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2025-01-18 16:03:09.105][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:09.107][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content"
biodb.TRACE[2025-01-18 16:03:09.113][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.request"
biodb.DEBUG[2025-01-18 16:03:09.135][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-01-18 16:03:09.139][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:09.140][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:09.143][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2025-01-18 16:03:09.294][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2025-01-18 16:03:09.295][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:09.297][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:09.299][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2025-01-18 16:03:09.373][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:09.375][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content"
biodb.TRACE[2025-01-18 16:03:09.380][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.request"
biodb.DEBUG[2025-01-18 16:03:09.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-01-18 16:03:09.412][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:09.413][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:09.416][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2025-01-18 16:03:09.473][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2025-01-18 16:03:09.474][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:09.476][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:09.478][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2025-01-18 16:03:09.753][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:09.756][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content"
biodb.TRACE[2025-01-18 16:03:09.761][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.request"
biodb.TRACE[2025-01-18 16:03:09.783][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:09.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:09.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:09.798][biodb::testThat]
biodb.INFO [2025-01-18 16:03:09.799][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-01-18 16:03:09.800][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:09.802][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:09.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:09.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.810][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:09.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:09.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:09.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:09.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:09.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:09.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:09.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:09.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:09.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:09.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:09.882][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:09.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-01-18 16:03:09.885][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:09.886][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-01-18 16:03:09.888][private$loadEntries] Creating entries from ids [3]: "172631573, 172608227, 172593299".
biodb.DEBUG[2025-01-18 16:03:09.890][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-01-18 16:03:09.891][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172631573, 172608227, 172593299".
biodb.TRACE[2025-01-18 16:03:09.893][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:09.894][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:09.896][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:09.897][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:09.898][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:09.899][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:09.923][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-01-18 16:03:09.925][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172631573,172608227,172593299/XML".
biodb.DEBUG[2025-01-18 16:03:09.928][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:09.929][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:09.931][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172631573,172608227,172593299/XML".
biodb.TRACE[2025-01-18 16:03:10.060][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172631573,172608227,172593299/XML).
biodb.TRACE[2025-01-18 16:03:10.219][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172631573.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172608227.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172593299.xml"
biodb.DEBUG[2025-01-18 16:03:10.223][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:10.224][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-01-18 16:03:10.226][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:10.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:10.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:10.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:10.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:10.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:10.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:10.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:10.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.247][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.253][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.255][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.257][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.264][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.265][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.268][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.274][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.276][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.278][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.285][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.286][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.288][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.295][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.296][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.324][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:10.326][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:10.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.328][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.330][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:10.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:10.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.335][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:10.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:10.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:10.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:10.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:10.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:10.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.360][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.367][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:10.368][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:10.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.370][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.372][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:10.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:10.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.377][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:10.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:10.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.381][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:10.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:10.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.387][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.389][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.398][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.399][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.408][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:10.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.423][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:10.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.437][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:10.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.452][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:10.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:10.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:10.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:10.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:10.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:10.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:10.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:10.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:10.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:10.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:10.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:10.536][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.546][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.548][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.550][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.556][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.558][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.560][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.566][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.568][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.577][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.578][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.587][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.588][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.590][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.597][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:10.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:10.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.602][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:10.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:10.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:10.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:10.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.611][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:10.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:10.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:10.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:10.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.621][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:10.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:10.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.631][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.637][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:10.639][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:10.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.641][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.643][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:10.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:10.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.648][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:10.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:10.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.651][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:10.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:10.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.658][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.659][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.661][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.668][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.669][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.672][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.693][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:10.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:10.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.768][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:10.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:10.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:10.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:10.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:10.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:10.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:10.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:10.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:10.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:10.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:10.837][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.841][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:10.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:10.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.847][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.848][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.851][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:10.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.857][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.859][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.868][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.869][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.871][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.878][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.879][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.882][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.889][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.890][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:10.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.899][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:10.900][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:10.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.902][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.904][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:10.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:10.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.909][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:10.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:10.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.913][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:10.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:10.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:10.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:10.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.923][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:10.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:10.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.930][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.931][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:10.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.940][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:10.941][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:10.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.944][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.945][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:10.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:10.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.950][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:10.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:10.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.954][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:10.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:10.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.961][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.962][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.964][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:10.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.971][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.972][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.974][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.982][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:10.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:10.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:10.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:10.997][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:10.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.012][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:11.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.046][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:11.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:11.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:11.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:11.157][self$createEntryFromContent] Accession numbers: 172631573, 172608227, 172593299.
biodb.DEBUG[2025-01-18 16:03:11.159][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:11.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:11.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:11.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:11.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:11.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:11.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:11.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:11.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.187][private$selectFields]
biodb.TRACE[2025-01-18 16:03:11.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:11.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:11.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.203][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.205][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.206][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.208][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.211][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.214][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.217][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:11.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:11.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:11.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:11.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:11.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:11.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:11.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:11.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:11.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.272][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.273][private$selectFields]
biodb.TRACE[2025-01-18 16:03:11.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:11.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:11.276][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.281][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.286][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.289][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.293][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.295][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:11.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-01-18 16:03:11.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:11.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:11.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:11.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:11.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:11.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:11.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.338][private$selectFields]
biodb.TRACE[2025-01-18 16:03:11.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:11.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:11.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.347][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.352][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.355][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:11.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.360][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.362][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:11.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:11.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-01-18 16:03:11.380][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:11.381][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:11.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:11.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:11.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:11.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:11.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:11.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:11.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:11.404][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:11.409][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:11.410][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:11.412][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:11.472][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:11.473][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:11.475][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:11.477][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:11.552][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:11.555][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2025-01-18 16:03:11.560][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2025-01-18 16:03:11.562][private$loadEntries] Creating entries from ids [3]: "172529292, 172529260, 172524779".
biodb.DEBUG[2025-01-18 16:03:11.564][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-01-18 16:03:11.566][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172529292, 172529260, 172524779".
biodb.TRACE[2025-01-18 16:03:11.567][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:11.569][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:11.570][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:11.571][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:11.573][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:11.574][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:11.575][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-01-18 16:03:11.577][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172529292,172529260,172524779/XML".
biodb.DEBUG[2025-01-18 16:03:11.580][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:11.581][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:11.583][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172529292,172529260,172524779/XML".
biodb.TRACE[2025-01-18 16:03:11.703][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172529292,172529260,172524779/XML).
biodb.TRACE[2025-01-18 16:03:11.882][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529292.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529260.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172524779.xml"
biodb.DEBUG[2025-01-18 16:03:11.886][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:11.887][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-01-18 16:03:11.889][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:11.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:11.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:11.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:11.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:11.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:11.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:11.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:11.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.910][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:11.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:11.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.916][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.918][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.920][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:11.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.927][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.928][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.930][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:11.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.937][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:11.938][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:11.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.941][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:11.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.947][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.948][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.951][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.957][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.959][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.961][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:11.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.968][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:11.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:11.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.971][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.973][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:11.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:11.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:11.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:11.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.981][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:11.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:11.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:11.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.992][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:11.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:11.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:11.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:11.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.002][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.008][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:12.010][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:12.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.012][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.013][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:12.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:12.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.018][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:12.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:12.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.022][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:12.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:12.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.029][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.039][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.040][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.042][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.061][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.075][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:12.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.120][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:12.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:12.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:12.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:12.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:12.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:12.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:12.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:12.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:12.189][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.192][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.199][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.200][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.202][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.209][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.210][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.213][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.219][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.221][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.223][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.229][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.231][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.233][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.240][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.241][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.250][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:12.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:12.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.253][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:12.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:12.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.260][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:12.261][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:12.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.264][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.265][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:12.272][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:12.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.274][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:12.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:12.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.284][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.291][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:12.292][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:12.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.296][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:12.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:12.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.301][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:12.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:12.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.305][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:12.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.311][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.313][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.315][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.322][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.323][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.325][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.332][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:12.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:12.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.391][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:12.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:12.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:12.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:12.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:12.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:12.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:12.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:12.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:12.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.463][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.478][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.480][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.482][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.489][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.490][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.499][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.500][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.503][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.509][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.511][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.513][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.520][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.521][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.523][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.530][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:12.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:12.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.534][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:12.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:12.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:12.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.544][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:12.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:12.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.554][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.561][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.565][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:12.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.571][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:12.572][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:12.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.575][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:12.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.581][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:12.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:12.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.585][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:12.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:12.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.591][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.593][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.595][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.601][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.603][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:12.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:12.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.656][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.671][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:12.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:12.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:12.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:12.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:12.772][self$createEntryFromContent] Accession numbers: 172529292, 172529260, 172524779.
biodb.DEBUG[2025-01-18 16:03:12.805][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:12.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:12.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:12.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:12.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:12.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:12.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:12.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:12.863][private$selectFields]
biodb.TRACE[2025-01-18 16:03:12.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:12.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:12.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:12.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.872][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:12.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:12.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:12.877][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.039][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.042][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.044][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.045][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-01-18 16:03:13.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:13.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:13.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:13.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:13.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:13.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:13.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:13.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.087][private$selectFields]
biodb.TRACE[2025-01-18 16:03:13.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:13.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:13.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.093][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.101][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.102][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.108][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:13.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-01-18 16:03:13.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:13.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:13.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:13.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:13.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:13.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:13.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.149][private$selectFields]
biodb.TRACE[2025-01-18 16:03:13.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:13.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:13.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.165][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:13.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.169][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.171][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:13.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-01-18 16:03:13.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:13.189][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:13.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:13.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:13.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:13.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:13.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:13.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:13.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:13.339][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:13.343][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:13.345][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:13.347][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:13.406][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:13.407][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:13.409][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:13.411][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:13.478][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:13.481][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content"
biodb.TRACE[2025-01-18 16:03:13.487][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.request"
biodb.DEBUG[2025-01-18 16:03:13.490][private$loadEntries] Creating entries from ids [3]: "172623142, 172622621, 172602027".
biodb.DEBUG[2025-01-18 16:03:13.492][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-01-18 16:03:13.494][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172623142, 172622621, 172602027".
biodb.TRACE[2025-01-18 16:03:13.495][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:13.497][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:13.498][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:13.499][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:13.501][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:13.502][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:13.503][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-01-18 16:03:13.505][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172623142,172622621,172602027/XML".
biodb.DEBUG[2025-01-18 16:03:13.508][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:13.510][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:13.511][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172623142,172622621,172602027/XML".
biodb.TRACE[2025-01-18 16:03:13.640][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172623142,172622621,172602027/XML).
biodb.TRACE[2025-01-18 16:03:13.829][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172623142.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172622621.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172602027.xml"
biodb.DEBUG[2025-01-18 16:03:13.833][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:13.834][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-01-18 16:03:13.836][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:13.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:13.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:13.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:13.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:13.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:13.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:13.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:13.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:13.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:13.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.857][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:13.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.864][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:13.865][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:13.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.868][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:13.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:13.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.874][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:13.876][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:13.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.878][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:13.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.885][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:13.886][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:13.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.889][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.895][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:13.897][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:13.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.904][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.916][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:13.917][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:13.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:13.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:13.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.926][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:13.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.930][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.931][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:13.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.937][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:13.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:13.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.940][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:13.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:13.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:13.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.950][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:13.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:13.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:13.958][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:13.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.960][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:13.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:13.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.967][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:13.968][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:13.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.970][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:13.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:13.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.977][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:13.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:13.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.980][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.987][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:13.988][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:13.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.990][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:13.997][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:13.999][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.008][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:14.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.022][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:14.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.037][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:14.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.068][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:14.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:14.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:14.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:14.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:14.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:14.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:14.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:14.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:14.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:14.138][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.142][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.148][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.150][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.152][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.160][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.169][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.170][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.172][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.179][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.180][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.183][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.189][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.193][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.200][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:14.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:14.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.203][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.205][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:14.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:14.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.210][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:14.211][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:14.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.213][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:14.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:14.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:14.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.224][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:14.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:14.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:14.232][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:14.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.234][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:14.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:14.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.241][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:14.242][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:14.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.246][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:14.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.251][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:14.252][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:14.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.255][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.261][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:14.263][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:14.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:14.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:14.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.272][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.273][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:14.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.297][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:14.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:14.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:14.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:14.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:14.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:14.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:14.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:14.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:14.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:14.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:14.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:14.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:14.414][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.415][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.418][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.424][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.426][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.428][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.435][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.436][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.438][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.445][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.446][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.448][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.455][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.456][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.459][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.465][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.467][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.469][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.475][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:14.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:14.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.479][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.481][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:14.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:14.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.486][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:14.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:14.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.489][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:14.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:14.497][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:14.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:14.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:14.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:14.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:14.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:14.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.516][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:14.518][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:14.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.520][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.522][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:14.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:14.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.527][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:14.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:14.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.530][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:14.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:14.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.537][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:14.538][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:14.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.541][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:14.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:14.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.547][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.549][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.551][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.558][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:14.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:14.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.573][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:14.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.588][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:14.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:14.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:14.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:14.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:14.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:14.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:14.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:14.717][self$createEntryFromContent] Accession numbers: 172623142, 172622621, 172602027.
biodb.DEBUG[2025-01-18 16:03:14.718][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:14.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:14.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:14.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:14.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:14.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:14.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:14.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:14.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.744][private$selectFields]
biodb.TRACE[2025-01-18 16:03:14.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:14.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:14.748][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.753][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.757][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.759][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.760][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.765][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.770][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-01-18 16:03:14.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:14.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:14.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:14.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:14.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:14.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:14.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:14.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.811][private$selectFields]
biodb.TRACE[2025-01-18 16:03:14.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:14.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:14.815][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.819][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.824][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.825][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.826][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.828][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.831][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.832][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:14.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-01-18 16:03:14.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:14.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:14.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:14.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:14.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:14.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:14.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.873][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.874][private$selectFields]
biodb.TRACE[2025-01-18 16:03:14.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:14.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:14.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.882][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.883][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.884][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.887][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.888][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.889][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:14.890][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.894][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.895][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:14.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:14.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-01-18 16:03:14.913][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:14.914][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:14.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:14.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:14.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:14.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:14.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:14.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:14.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:14.936][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:14.940][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:14.941][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:14.944][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:15.002][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:15.003][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:15.005][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:15.007][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:15.075][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:15.077][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2025-01-18 16:03:15.082][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2025-01-18 16:03:15.085][private$loadEntries] Creating entries from ids [3]: "172634706, 172629519, 172621093".
biodb.DEBUG[2025-01-18 16:03:15.086][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-01-18 16:03:15.088][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172634706, 172629519, 172621093".
biodb.TRACE[2025-01-18 16:03:15.089][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:15.091][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:15.092][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:15.093][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:15.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:15.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:15.097][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-01-18 16:03:15.099][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172634706,172629519,172621093/XML".
biodb.DEBUG[2025-01-18 16:03:15.102][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:15.103][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:15.105][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172634706,172629519,172621093/XML".
biodb.TRACE[2025-01-18 16:03:15.199][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172634706,172629519,172621093/XML).
biodb.TRACE[2025-01-18 16:03:15.317][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172634706.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172629519.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172621093.xml"
biodb.DEBUG[2025-01-18 16:03:15.321][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:15.322][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-01-18 16:03:15.324][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:15.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:15.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:15.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:15.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:15.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:15.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:15.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:15.341][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.345][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.351][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.353][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.355][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.361][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.363][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.365][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.372][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.373][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.376][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.382][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.384][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.386][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.393][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.394][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.403][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:15.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:15.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.407][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:15.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:15.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.413][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:15.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:15.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.417][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:15.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:15.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.424][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:15.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:15.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.427][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:15.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:15.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.437][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:15.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:15.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.444][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:15.445][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:15.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:15.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.454][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:15.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:15.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.458][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.464][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:15.465][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:15.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:15.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:15.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.474][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:15.475][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:15.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.478][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:15.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.484][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.499][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:15.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.514][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:15.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:15.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:15.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:15.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:15.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:15.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:15.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:15.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:15.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:15.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.763][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.769][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.770][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.773][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.779][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.780][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.783][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.789][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.791][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.799][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.800][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.803][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.809][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.810][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.813][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.819][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:15.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:15.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:15.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:15.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:15.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:15.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:15.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:15.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:15.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:15.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:15.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.853][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:15.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:15.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.859][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:15.860][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:15.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.863][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:15.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.869][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:15.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:15.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.873][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:15.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:15.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.879][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:15.881][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:15.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:15.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.889][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:15.891][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:15.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:15.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:15.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.900][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:15.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:15.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:15.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.929][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:15.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:15.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.944][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:15.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:15.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.958][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:15.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:15.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:15.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:15.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:15.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:15.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:15.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:15.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:16.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:16.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:16.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:16.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:16.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:16.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:16.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:16.026][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.036][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.038][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.046][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.048][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.050][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.056][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.058][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.060][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.066][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.068][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.070][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.077][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.078][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.080][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.087][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:16.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:16.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.091][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.092][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:16.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:16.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.101][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:16.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:16.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.105][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:16.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:16.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.115][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:16.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:16.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:16.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:16.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.124][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:16.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.131][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:16.132][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:16.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.134][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.135][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:16.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.139][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:16.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.145][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:16.147][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:16.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:16.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:16.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.155][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:16.156][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:16.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.159][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:16.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:16.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.165][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:16.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:16.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.181][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:16.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:16.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:16.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:16.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.225][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:16.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:16.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:16.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:16.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:16.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:16.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:16.351][self$createEntryFromContent] Accession numbers: 172634706, 172629519, 172621093.
biodb.DEBUG[2025-01-18 16:03:16.356][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:16.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:16.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:16.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:16.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:16.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:16.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:16.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.384][private$selectFields]
biodb.TRACE[2025-01-18 16:03:16.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:16.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:16.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.389][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.390][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.392][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.397][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.400][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.405][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.406][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-01-18 16:03:16.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:16.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:16.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:16.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:16.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:16.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:16.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.447][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.448][private$selectFields]
biodb.TRACE[2025-01-18 16:03:16.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:16.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:16.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.456][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.461][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.463][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.470][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:16.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2025-01-18 16:03:16.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:16.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:16.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:16.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:16.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:16.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:16.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:16.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.511][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.513][private$selectFields]
biodb.TRACE[2025-01-18 16:03:16.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:16.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:16.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.521][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.526][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.529][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:16.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.533][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.535][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:16.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:16.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621093].
biodb.DEBUG[2025-01-18 16:03:16.556][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:16.558][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:16.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:16.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.573][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:16.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:16.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:16.582][biodb::testThat]
biodb.INFO [2025-01-18 16:03:16.583][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-01-18 16:03:16.584][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:16.585][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:16.589][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:16.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:16.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:16.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:16.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:16.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:16.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:16.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:16.659][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:16.663][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:16.665][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:16.667][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:16.725][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:16.726][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:16.728][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:16.730][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:16.795][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:16.798][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content"
biodb.TRACE[2025-01-18 16:03:16.803][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.request"
biodb.DEBUG[2025-01-18 16:03:16.805][private$loadEntries] Creating entries from ids [1]: "172574413".
biodb.DEBUG[2025-01-18 16:03:16.806][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:03:16.808][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172574413".
biodb.TRACE[2025-01-18 16:03:16.810][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:03:16.811][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:16.813][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:16.814][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:16.815][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:16.816][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:16.818][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-18 16:03:16.820][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172574413/XML".
biodb.DEBUG[2025-01-18 16:03:16.823][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:16.824][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:16.826][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172574413/XML".
biodb.TRACE[2025-01-18 16:03:16.917][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172574413/XML).
biodb.TRACE[2025-01-18 16:03:17.025][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172574413.xml"
biodb.DEBUG[2025-01-18 16:03:17.027][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:17.028][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:17.030][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:17.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:17.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:17.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:17.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:17.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:17.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:17.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:17.047][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.050][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.057][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.058][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.060][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.067][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.068][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.070][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.077][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.078][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.080][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.087][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.088][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.091][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.097][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.098][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.101][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.107][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:17.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:17.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.111][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:17.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:17.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.117][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:17.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:17.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.121][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:17.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:17.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.131][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:17.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:17.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.138][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:17.139][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:17.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.142][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:17.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:17.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.148][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:17.150][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:17.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.152][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:17.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:17.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.159][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:17.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:17.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.169][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:17.170][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:17.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.172][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:17.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.179][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:17.180][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:17.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.183][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:17.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:17.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.189][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:17.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:17.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.204][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:17.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:17.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:17.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:17.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.234][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:17.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.249][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:17.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:17.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:17.328][self$createEntryFromContent] Accession numbers: 172574413.
biodb.DEBUG[2025-01-18 16:03:17.329][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:17.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:17.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:17.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:17.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:17.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:17.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:17.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.400][private$selectFields]
biodb.TRACE[2025-01-18 16:03:17.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:17.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:17.403][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.413][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.428][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.434][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:17.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:17.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:17.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:17.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:17.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:17.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:17.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:17.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.474][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.476][private$selectFields]
biodb.TRACE[2025-01-18 16:03:17.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:17.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:17.479][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.480][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.484][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.489][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.490][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.491][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.494][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.496][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.497][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:17.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.514][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-01-18 16:03:17.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:17.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:17.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:17.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:17.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:17.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:17.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.539][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.540][private$selectFields]
biodb.TRACE[2025-01-18 16:03:17.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:17.542][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:17.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.548][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.549][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.553][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.556][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:17.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.560][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.562][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:17.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:17.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172574413].
biodb.DEBUG[2025-01-18 16:03:17.580][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:17.581][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:17.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:17.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:17.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:17.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:17.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:17.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:17.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:17.605][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:17.609][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:17.610][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:17.612][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:17.672][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:17.673][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:17.675][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:17.677][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:17.745][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:17.747][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2025-01-18 16:03:17.752][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2025-01-18 16:03:17.755][private$loadEntries] Creating entries from ids [2]: "172415476, 172413321".
biodb.DEBUG[2025-01-18 16:03:17.756][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-01-18 16:03:17.758][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172415476, 172413321".
biodb.TRACE[2025-01-18 16:03:17.759][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:17.761][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:17.762][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:17.763][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:17.765][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:17.766][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:17.767][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-01-18 16:03:17.769][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321/XML".
biodb.DEBUG[2025-01-18 16:03:17.772][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:17.773][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:17.775][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321/XML".
biodb.TRACE[2025-01-18 16:03:17.850][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321/XML).
biodb.TRACE[2025-01-18 16:03:18.050][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172415476.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413321.xml"
biodb.DEBUG[2025-01-18 16:03:18.052][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:18.054][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-01-18 16:03:18.055][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:18.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:18.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:18.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:18.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:18.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:18.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:18.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:18.072][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.074][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.076][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.082][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.084][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.086][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.093][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.094][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.096][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.103][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.104][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.113][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.115][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.133][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.134][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.136][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.143][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:18.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:18.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.153][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:18.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:18.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:18.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:18.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:18.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:18.175][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:18.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.184][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:18.185][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:18.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.187][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.189][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:18.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:18.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.194][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:18.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:18.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.197][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:18.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:18.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.204][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:18.205][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:18.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.207][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.214][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:18.215][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:18.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.218][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.224][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.239][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:18.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:18.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.268][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:18.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:18.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:18.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:18.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:18.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:18.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:18.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:18.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:18.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:18.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:18.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:18.353][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.357][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.363][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.364][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.373][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.375][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.377][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.384][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.385][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.394][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.395][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.397][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.404][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.405][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.414][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:18.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.418][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.419][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:18.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.425][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:18.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:18.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.428][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:18.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:18.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:18.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:18.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.439][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:18.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:18.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:18.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:18.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:18.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:18.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.455][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:18.457][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:18.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.459][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:18.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:18.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.466][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:18.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:18.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.469][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:18.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:18.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.476][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:18.477][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:18.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.480][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.486][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:18.488][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:18.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.490][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:18.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:18.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.497][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:18.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.512][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:18.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:18.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:18.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:18.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:18.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:18.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.562][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:18.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:18.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:18.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:18.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:18.646][self$createEntryFromContent] Accession numbers: 172415476, 172413321.
biodb.DEBUG[2025-01-18 16:03:18.648][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:18.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:18.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:18.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:18.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:18.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:18.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:18.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:18.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.674][private$selectFields]
biodb.TRACE[2025-01-18 16:03:18.675][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:18.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:18.677][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.679][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.680][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.687][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.688][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.689][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.695][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:18.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-01-18 16:03:18.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:18.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:18.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:18.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:18.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:18.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:18.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:18.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.736][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.737][private$selectFields]
biodb.TRACE[2025-01-18 16:03:18.738][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:18.739][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:18.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.743][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.746][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.750][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.751][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.752][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.757][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.758][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:18.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172415476].
biodb.DEBUG[2025-01-18 16:03:18.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:18.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:18.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:18.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:18.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:18.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:18.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:18.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.799][private$selectFields]
biodb.TRACE[2025-01-18 16:03:18.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:18.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:18.803][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.808][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.813][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.814][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.815][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:18.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.820][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.821][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:18.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.837][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413321].
biodb.DEBUG[2025-01-18 16:03:18.839][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:18.840][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:18.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:18.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:18.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:18.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:18.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:18.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:18.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:18.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:18.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:18.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:18.912][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:18.917][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:18.918][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:18.920][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:18.979][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:18.981][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:18.983][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:18.984][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:19.053][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:19.055][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content"
biodb.TRACE[2025-01-18 16:03:19.060][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.request"
biodb.DEBUG[2025-01-18 16:03:19.063][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:19.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:19.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:19.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:19.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:19.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:19.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:19.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:19.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.089][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.090][private$selectFields]
biodb.TRACE[2025-01-18 16:03:19.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:19.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:19.094][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.095][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.099][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.108][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.111][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.112][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.113][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.118][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:19.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-01-18 16:03:19.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:19.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:19.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:19.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:19.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:19.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:19.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:19.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.159][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.160][private$selectFields]
biodb.TRACE[2025-01-18 16:03:19.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:19.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:19.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.168][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.169][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.173][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.174][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.175][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.180][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.181][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:19.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.198][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-01-18 16:03:19.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:19.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:19.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:19.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:19.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:19.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:19.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.223][private$selectFields]
biodb.TRACE[2025-01-18 16:03:19.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:19.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:19.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.231][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.232][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.236][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.238][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:19.240][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.241][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.244][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:19.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-01-18 16:03:19.261][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:19.263][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:19.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:19.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:19.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:19.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:19.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:19.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:19.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:19.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:19.289][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:19.290][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:19.292][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:19.350][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:19.351][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:19.353][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:19.355][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:19.422][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:19.424][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2025-01-18 16:03:19.429][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2025-01-18 16:03:19.432][private$loadEntries] Creating entries from ids [2]: "172583683, 172561660".
biodb.DEBUG[2025-01-18 16:03:19.433][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-01-18 16:03:19.435][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172583683, 172561660".
biodb.TRACE[2025-01-18 16:03:19.437][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:19.438][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:19.439][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:19.441][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:19.442][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:19.443][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:19.444][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-01-18 16:03:19.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.DEBUG[2025-01-18 16:03:19.450][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:19.451][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:19.453][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.TRACE[2025-01-18 16:03:19.526][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML).
biodb.TRACE[2025-01-18 16:03:19.634][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172583683.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172561660.xml"
biodb.DEBUG[2025-01-18 16:03:19.637][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:19.638][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-01-18 16:03:19.640][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:19.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:19.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:19.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:19.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:19.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:19.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:19.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:19.657][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:19.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:19.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.661][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:19.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.667][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.669][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.671][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.678][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.679][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.688][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.689][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.691][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.698][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.699][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.702][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.708][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.710][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.712][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.718][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:19.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:19.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.722][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.724][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:19.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:19.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.729][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:19.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:19.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.732][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:19.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:19.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:19.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:19.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.743][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:19.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:19.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:19.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:19.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.753][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:19.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:19.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.760][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:19.761][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:19.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.763][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.765][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:19.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:19.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.768][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:19.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.775][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:19.776][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:19.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.779][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:19.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:19.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.785][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:19.787][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:19.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.789][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:19.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:19.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.811][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:19.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.851][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:19.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.865][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:19.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:19.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:19.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:19.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:19.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:19.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:19.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:19.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:19.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:19.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:19.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:19.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:19.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:19.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:19.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:19.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:19.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:19.935][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:19.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:19.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:19.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.945][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.946][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.949][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:19.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.955][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.956][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.959][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:19.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.965][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.967][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.969][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:19.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.976][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.977][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.980][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:19.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.986][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.988][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.990][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:19.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:19.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:19.996][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:19.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:19.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.000][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:20.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:20.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:20.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.010][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:20.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:20.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.020][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:20.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:20.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:20.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:20.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:20.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.037][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:20.038][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:20.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.041][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.042][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:20.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:20.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.047][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:20.048][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.051][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:20.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.057][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:20.059][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:20.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.061][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:20.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.067][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:20.069][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:20.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.071][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:20.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:20.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.078][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:20.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:20.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:20.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:20.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.092][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:20.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:20.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:20.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:20.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.107][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:20.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:20.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:20.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:20.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:20.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:20.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.122][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:20.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:20.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:20.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:20.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.137][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:20.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:20.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:20.220][self$createEntryFromContent] Accession numbers: 172583683, 172561660.
biodb.DEBUG[2025-01-18 16:03:20.222][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:20.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.248][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.250][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.256][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.261][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.268][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.273][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.274][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172583683].
biodb.DEBUG[2025-01-18 16:03:20.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.316][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.319][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.324][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.329][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.332][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.338][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172561660].
biodb.DEBUG[2025-01-18 16:03:20.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.378][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.379][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.380][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.388][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.389][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.390][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.392][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.395][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.396][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.397][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.400][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.401][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.417][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-01-18 16:03:20.419][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:20.420][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:20.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:20.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.435][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:20.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:20.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:20.444][biodb::testThat]
biodb.INFO [2025-01-18 16:03:20.446][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-01-18 16:03:20.447][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:20.448][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:20.451][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:20.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:20.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.456][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:20.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:20.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:20.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:20.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:20.525][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:20.529][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:20.531][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-01-18 16:03:20.532][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:20.534][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-01-18 16:03:20.536][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:20.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.563][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.571][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.576][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.577][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.579][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.584][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.585][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:20.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.628][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.641][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.644][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.649][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.650][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.667][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-01-18 16:03:20.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.694][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.707][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.712][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.714][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.719][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.720][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-01-18 16:03:20.738][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:20.739][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:20.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:20.762][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:20.766][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:20.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-01-18 16:03:20.769][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:20.771][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-01-18 16:03:20.773][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:20.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.799][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.800][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.803][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.808][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.813][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.814][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.815][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.820][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.821][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-01-18 16:03:20.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.864][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.872][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.877][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.880][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.884][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.886][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-01-18 16:03:20.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:20.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:20.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:20.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:20.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:20.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:20.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:20.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.926][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.927][private$selectFields]
biodb.TRACE[2025-01-18 16:03:20.928][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:20.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:20.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.935][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.941][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.943][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:20.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.949][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:20.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:20.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-01-18 16:03:20.967][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:20.968][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:20.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:20.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:20.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:20.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:20.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:20.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:21.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:21.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:21.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:21.062][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:21.064][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-01-18 16:03:21.065][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:21.067][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-01-18 16:03:21.069][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:21.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:21.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.094][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.095][private$selectFields]
biodb.TRACE[2025-01-18 16:03:21.096][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:21.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:21.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.103][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.108][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.111][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.112][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.115][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.117][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:21.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-01-18 16:03:21.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.163][private$selectFields]
biodb.TRACE[2025-01-18 16:03:21.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:21.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:21.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.171][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.176][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.177][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.179][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.181][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.183][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.185][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:21.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.201][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-01-18 16:03:21.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:21.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.226][private$selectFields]
biodb.TRACE[2025-01-18 16:03:21.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:21.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:21.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.234][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.242][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.243][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.244][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.247][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-01-18 16:03:21.265][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:21.266][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:21.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:21.288][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:21.292][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:21.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-01-18 16:03:21.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:21.297][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-01-18 16:03:21.299][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:21.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:21.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.325][private$selectFields]
biodb.TRACE[2025-01-18 16:03:21.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:21.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:21.328][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.333][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.338][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.341][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.345][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.347][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:21.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-01-18 16:03:21.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.388][private$selectFields]
biodb.TRACE[2025-01-18 16:03:21.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:21.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:21.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.399][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.402][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.403][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.409][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:21.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.426][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2025-01-18 16:03:21.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:21.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.450][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.451][private$selectFields]
biodb.TRACE[2025-01-18 16:03:21.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:21.453][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:21.454][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.459][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.460][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.464][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.465][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.466][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:21.468][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.471][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.473][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621093].
biodb.DEBUG[2025-01-18 16:03:21.490][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:21.491][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:21.515][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:21.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.521][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:21.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.529][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:21.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:21.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.533][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.538][ef$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:21.540][biodb::testThat]
biodb.INFO [2025-01-18 16:03:21.541][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-01-18 16:03:21.542][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:21.543][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:21.547][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:21.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:21.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.552][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:21.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:21.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:21.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:21.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:21.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:21.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:21.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:21.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:21.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:21.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:21.627][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:21.628][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:21.630][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:21.690][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:21.691][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:21.693][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:21.695][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:21.769][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:21.772][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2025-01-18 16:03:21.777][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2025-01-18 16:03:21.780][private$loadEntries] Creating entries from ids [2]: "172639225, 172626062".
biodb.DEBUG[2025-01-18 16:03:21.781][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-01-18 16:03:21.783][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172639225, 172626062".
biodb.TRACE[2025-01-18 16:03:21.785][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:21.786][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:21.788][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:21.789][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:21.790][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:21.791][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:21.793][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-01-18 16:03:21.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639225,172626062/XML".
biodb.DEBUG[2025-01-18 16:03:21.798][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:21.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:21.801][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639225,172626062/XML".
biodb.TRACE[2025-01-18 16:03:21.913][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639225,172626062/XML).
biodb.TRACE[2025-01-18 16:03:22.038][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639225.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172626062.xml"
biodb.DEBUG[2025-01-18 16:03:22.041][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:22.042][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-01-18 16:03:22.044][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:22.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:22.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:22.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:22.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:22.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:22.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:22.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:22.061][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.065][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.072][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.073][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.075][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.082][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.083][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.086][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.092][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.094][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.096][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.103][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.104][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.113][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.115][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.123][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:22.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:22.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.127][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.129][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.134][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:22.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:22.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.137][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:22.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:22.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:22.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:22.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.148][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:22.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:22.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:22.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:22.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.158][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:22.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:22.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.164][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:22.166][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:22.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.168][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.170][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:22.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:22.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.175][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:22.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:22.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.178][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:22.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:22.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.185][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:22.186][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:22.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.189][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:22.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.195][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:22.197][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:22.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.199][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:22.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:22.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.206][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:22.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:22.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.235][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:22.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:22.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.265][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:22.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:22.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:22.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:22.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:22.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:22.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:22.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:22.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:22.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:22.335][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.346][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.347][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.349][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.366][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.367][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.369][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.376][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.377][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.380][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.386][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.388][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.390][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.397][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.398][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.400][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.407][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:22.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:22.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.411][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:22.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.418][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:22.419][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:22.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.422][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:22.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:22.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.432][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:22.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:22.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.442][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:22.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.448][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:22.450][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:22.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.452][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.459][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:22.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:22.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.462][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:22.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.469][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:22.470][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:22.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.472][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:22.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:22.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.479][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:22.480][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:22.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.483][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:22.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:22.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.519][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:22.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.533][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:22.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:22.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.548][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:22.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:22.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:22.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:22.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:22.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:22.632][self$createEntryFromContent] Accession numbers: 172639225, 172626062.
biodb.DEBUG[2025-01-18 16:03:22.633][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:22.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:22.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:22.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:22.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:22.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:22.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:22.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.659][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.660][private$selectFields]
biodb.TRACE[2025-01-18 16:03:22.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:22.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:22.663][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.676][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.680][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.682][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-01-18 16:03:22.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:22.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:22.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:22.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:22.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:22.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:22.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:22.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.724][private$selectFields]
biodb.TRACE[2025-01-18 16:03:22.725][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:22.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:22.728][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.730][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.738][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.739][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.740][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.746][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:22.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:22.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:22.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:22.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:22.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:22.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:22.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:22.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:22.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.791][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.792][private$selectFields]
biodb.TRACE[2025-01-18 16:03:22.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:22.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:22.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.800][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.805][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.806][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.807][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:22.808][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.812][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.813][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:22.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:22.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:22.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172626062].
biodb.DEBUG[2025-01-18 16:03:22.830][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:22.831][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:22.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:22.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:22.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:22.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:22.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:22.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:22.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:22.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:22.857][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:22.858][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:22.861][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:22.919][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:22.921][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:22.923][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:22.924][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:22.994][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:22.997][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2025-01-18 16:03:23.002][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2025-01-18 16:03:23.004][private$loadEntries] Creating entries from ids [3]: "172617828, 172612147, 172608842".
biodb.DEBUG[2025-01-18 16:03:23.006][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-01-18 16:03:23.008][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172617828, 172612147, 172608842".
biodb.TRACE[2025-01-18 16:03:23.009][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:23.011][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:23.012][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:23.013][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:23.014][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:23.016][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:23.017][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-01-18 16:03:23.019][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147,172608842/XML".
biodb.DEBUG[2025-01-18 16:03:23.022][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:23.023][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:23.025][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147,172608842/XML".
biodb.TRACE[2025-01-18 16:03:23.158][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172617828,172612147,172608842/XML).
biodb.TRACE[2025-01-18 16:03:23.272][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172617828.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172612147.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172608842.xml"
biodb.DEBUG[2025-01-18 16:03:23.276][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:23.277][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-01-18 16:03:23.279][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:23.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:23.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:23.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:23.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:23.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:23.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:23.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:23.296][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.300][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.306][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.308][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.310][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.311][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.313][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.315][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.316][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.318][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.320][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.322][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.323][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.325][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.327][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.328][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.330][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.332][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:23.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:23.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.335][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.337][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:23.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:23.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.342][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:23.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:23.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.345][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:23.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:23.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:23.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:23.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.355][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.365][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.372][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:23.373][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:23.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.375][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.377][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:23.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:23.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.380][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:23.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.387][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.388][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.397][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.399][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.408][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:23.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.418][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.423][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:23.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.428][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:23.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:23.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:23.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:23.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:23.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:23.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:23.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:23.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:23.482][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.486][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.492][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.494][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.496][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.503][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.504][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.506][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.513][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.514][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.523][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.525][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.527][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.534][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.535][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.537][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.544][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:23.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:23.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.548][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.549][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:23.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:23.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.554][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:23.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:23.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:23.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:23.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:23.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:23.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.568][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:23.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:23.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.588][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.594][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:23.596][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:23.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.598][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.599][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:23.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:23.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.603][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:23.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:23.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.610][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.611][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.620][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.621][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.623][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.630][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:23.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:23.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.660][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:23.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.674][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.689][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:23.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:23.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:23.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:23.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:23.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:23.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:23.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:23.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:23.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:23.758][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.761][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.768][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.769][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.771][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.778][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.779][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.782][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.788][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.790][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.792][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.798][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.800][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.802][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.809][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.810][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.812][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.819][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:23.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:23.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.822][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.824][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:23.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:23.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:23.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:23.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:23.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:23.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:23.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:23.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:23.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:23.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.853][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:23.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.860][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:23.861][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:23.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.863][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.865][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:23.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:23.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.869][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:23.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.875][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.877][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:23.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.886][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.887][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.889][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:23.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.896][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:23.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.911][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:23.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:23.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.926][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:23.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:23.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:23.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:23.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.955][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:23.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:23.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:23.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:23.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:23.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:23.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:23.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:24.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:24.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:24.059][self$createEntryFromContent] Accession numbers: 172617828, 172612147, 172608842.
biodb.DEBUG[2025-01-18 16:03:24.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:24.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.086][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.099][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.101][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.102][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.108][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172617828].
biodb.DEBUG[2025-01-18 16:03:24.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.150][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.151][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.152][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.156][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.158][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.165][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.168][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.170][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.171][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172612147].
biodb.DEBUG[2025-01-18 16:03:24.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.212][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.213][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.217][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.222][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.227][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.229][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.234][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.235][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608842].
biodb.DEBUG[2025-01-18 16:03:24.253][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:24.254][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:24.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:24.300][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:24.304][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:24.306][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-01-18 16:03:24.308][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:24.309][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-01-18 16:03:24.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:24.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.336][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.337][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.341][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.347][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.348][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.351][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.352][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.353][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.358][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.359][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:24.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.401][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.403][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.404][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.405][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.408][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.415][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.416][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.417][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.422][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.423][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.445][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-01-18 16:03:24.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.471][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.473][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.474][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.476][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.478][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.480][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.485][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.487][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.493][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-01-18 16:03:24.511][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:24.512][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:24.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:24.534][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:24.538][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:24.540][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-01-18 16:03:24.542][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:24.543][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-01-18 16:03:24.545][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:24.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.571][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.584][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.587][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.592][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.593][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-01-18 16:03:24.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.636][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.637][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.649][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.650][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.652][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.656][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.657][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.674][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-01-18 16:03:24.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:24.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.698][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.699][private$selectFields]
biodb.TRACE[2025-01-18 16:03:24.700][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:24.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:24.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.707][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.712][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.715][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:24.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.720][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.721][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:24.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:24.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:24.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:24.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-01-18 16:03:24.738][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:24.739][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:24.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:24.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:24.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:24.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:24.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:24.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:24.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:24.786][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:24.791][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:24.792][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:24.795][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:24.853][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:24.855][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:24.856][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:24.858][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:25.168][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:25.171][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2025-01-18 16:03:25.176][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2025-01-18 16:03:25.178][private$loadEntries] Creating entries from ids [2]: "172638764, 172638763".
biodb.DEBUG[2025-01-18 16:03:25.180][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-01-18 16:03:25.182][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172638764, 172638763".
biodb.TRACE[2025-01-18 16:03:25.183][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:25.184][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:25.186][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:25.187][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:25.188][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:25.189][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:25.191][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-01-18 16:03:25.193][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172638764,172638763/XML".
biodb.DEBUG[2025-01-18 16:03:25.196][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:25.197][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:25.199][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172638764,172638763/XML".
biodb.TRACE[2025-01-18 16:03:25.272][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172638764,172638763/XML).
biodb.TRACE[2025-01-18 16:03:25.409][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638764.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638763.xml"
biodb.DEBUG[2025-01-18 16:03:25.412][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:25.414][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-01-18 16:03:25.415][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:25.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:25.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:25.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:25.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:25.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:25.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:25.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:25.432][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.446][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.452][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.454][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.456][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.463][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.464][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.466][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.473][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.474][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.476][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.483][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.484][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.493][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.494][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.497][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.503][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:25.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:25.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.507][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.508][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:25.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:25.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.514][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:25.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:25.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:25.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:25.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:25.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:25.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.527][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:25.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:25.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:25.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.538][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:25.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:25.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.544][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:25.545][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:25.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.548][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.549][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:25.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:25.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.554][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:25.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:25.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:25.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.565][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:25.566][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:25.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.568][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:25.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:25.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.575][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:25.576][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:25.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.579][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:25.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:25.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:25.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:25.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.615][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:25.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.630][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:25.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.644][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:25.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:25.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:25.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:25.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:25.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:25.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:25.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:25.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:25.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:25.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.715][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.722][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.723][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.732][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.733][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.735][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.742][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.743][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.752][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.753][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.755][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.762][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.763][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.772][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:25.774][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:25.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.776][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.778][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:25.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:25.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:25.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.786][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:25.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:25.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:25.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:25.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:25.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.803][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:25.804][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:25.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.807][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:25.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:25.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.813][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:25.815][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:25.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.817][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:25.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:25.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.824][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:25.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:25.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.827][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:25.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.834][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:25.835][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:25.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.837][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:25.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:25.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.844][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:25.845][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:25.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.848][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:25.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:25.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:25.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:25.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.902][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:25.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:25.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:25.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:25.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:25.998][self$createEntryFromContent] Accession numbers: 172638764, 172638763.
biodb.DEBUG[2025-01-18 16:03:25.999][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:26.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:26.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:26.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:26.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:26.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:26.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:26.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:26.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.025][private$selectFields]
biodb.TRACE[2025-01-18 16:03:26.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:26.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:26.028][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.033][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.038][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.039][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.040][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.041][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.042][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.045][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.046][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:26.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-01-18 16:03:26.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:26.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:26.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:26.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:26.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:26.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:26.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.086][private$selectFields]
biodb.TRACE[2025-01-18 16:03:26.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:26.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:26.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.094][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.099][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.100][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.102][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.106][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.107][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:26.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-01-18 16:03:26.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:26.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:26.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:26.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:26.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:26.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:26.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.149][private$selectFields]
biodb.TRACE[2025-01-18 16:03:26.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:26.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:26.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.164][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:26.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.169][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.170][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:26.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:26.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:26.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:26.189][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:26.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:26.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:26.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:26.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:26.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:26.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:26.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:26.211][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:26.215][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:26.216][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:26.218][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:26.277][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:26.278][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:26.280][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:26.282][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:26.588][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:26.590][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2025-01-18 16:03:26.596][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2025-01-18 16:03:26.599][private$loadEntries] Creating entries from ids [3]: "172639742, 172639183, 172638885".
biodb.DEBUG[2025-01-18 16:03:26.600][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-01-18 16:03:26.602][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172639742, 172639183, 172638885".
biodb.TRACE[2025-01-18 16:03:26.603][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-01-18 16:03:26.605][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:26.606][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:26.607][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:26.608][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:26.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:26.611][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-01-18 16:03:26.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639742,172639183,172638885/XML".
biodb.DEBUG[2025-01-18 16:03:26.616][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:26.617][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:26.619][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639742,172639183,172638885/XML".
biodb.TRACE[2025-01-18 16:03:26.696][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639742,172639183,172638885/XML).
biodb.TRACE[2025-01-18 16:03:26.870][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639742.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639183.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638885.xml"
biodb.DEBUG[2025-01-18 16:03:26.873][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:26.875][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-01-18 16:03:26.876][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:26.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:26.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:26.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:26.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:26.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:26.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:26.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:26.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:26.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:26.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.906][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:26.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.913][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:26.914][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:26.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.916][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:26.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:26.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.923][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:26.924][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:26.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.926][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.933][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:26.934][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:26.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.936][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:26.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:26.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.943][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:26.944][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:26.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.946][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:26.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:26.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.953][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:26.954][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:26.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.956][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:26.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:26.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.963][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:26.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:26.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.967][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.973][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:26.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:26.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.977][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:26.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:26.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:26.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.987][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:26.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:26.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:26.997][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:26.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.003][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:27.004][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:27.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.007][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.008][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.013][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:27.015][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:27.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.017][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:27.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:27.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.023][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.025][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.034][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.035][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.037][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:27.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.073][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.088][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:27.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.103][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:27.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:27.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:27.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:27.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:27.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:27.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:27.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:27.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:27.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:27.172][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.176][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.182][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.183][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.186][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.192][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.194][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.196][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.203][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.204][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.213][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.214][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.217][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.223][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.225][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.227][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.234][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:27.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:27.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.238][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.239][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:27.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:27.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:27.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:27.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.248][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:27.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:27.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:27.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:27.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.267][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.269][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.276][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:27.277][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:27.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.280][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.287][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:27.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:27.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.290][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:27.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:27.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.297][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.299][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.301][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.313][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.314][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.317][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.339][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:27.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:27.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:27.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.383][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:27.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:27.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:27.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:27.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:27.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:27.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:27.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:27.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:27.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:27.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:27.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.457][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.464][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.465][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.474][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.476][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.478][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.485][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.486][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.488][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.495][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.496][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.505][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.507][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.516][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:27.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:27.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.519][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.521][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:27.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.526][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:27.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:27.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.530][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:27.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:27.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:27.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.547][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.550][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:27.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.557][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:27.558][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:27.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.562][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:27.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.567][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:27.569][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:27.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.571][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:27.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:27.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.578][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.579][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.581][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:27.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.588][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.589][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.592][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.599][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:27.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:27.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.613][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:27.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.628][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.643][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:27.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:27.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:27.790][self$createEntryFromContent] Accession numbers: 172639742, 172639183, 172638885.
biodb.DEBUG[2025-01-18 16:03:27.792][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:27.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:27.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:27.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:27.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:27.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:27.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:27.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:27.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.817][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.818][private$selectFields]
biodb.TRACE[2025-01-18 16:03:27.819][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:27.820][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:27.821][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.827][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.831][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.832][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.834][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.838][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.839][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639742].
biodb.DEBUG[2025-01-18 16:03:27.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:27.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:27.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:27.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:27.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:27.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:27.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:27.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.882][private$selectFields]
biodb.TRACE[2025-01-18 16:03:27.883][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:27.884][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:27.885][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.890][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.895][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.896][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.898][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.903][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.904][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.920][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639183].
biodb.DEBUG[2025-01-18 16:03:27.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:27.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:27.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:27.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:27.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:27.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:27.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.944][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.945][private$selectFields]
biodb.TRACE[2025-01-18 16:03:27.947][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:27.948][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:27.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.954][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.959][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.960][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.961][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:27.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.966][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.968][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:27.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:27.987][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638885].
biodb.DEBUG[2025-01-18 16:03:27.989][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:27.990][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:28.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:28.038][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:28.042][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:28.044][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2025-01-18 16:03:28.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:28.047][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2025-01-18 16:03:28.049][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:28.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.075][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.076][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.077][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.078][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.085][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.089][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.092][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.097][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.098][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-01-18 16:03:28.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.140][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.141][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.157][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.163][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:28.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.211][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.214][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.219][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.220][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.224][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.226][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.231][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.232][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172626062].
biodb.DEBUG[2025-01-18 16:03:28.250][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:28.251][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:28.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:28.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:28.278][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:28.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2025-01-18 16:03:28.281][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:28.282][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2025-01-18 16:03:28.285][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:28.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.311][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.324][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.326][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.331][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.332][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172617828].
biodb.DEBUG[2025-01-18 16:03:28.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.372][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.373][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.378][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.379][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.386][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.389][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.394][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.395][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.411][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172612147].
biodb.DEBUG[2025-01-18 16:03:28.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.436][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.439][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.444][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.450][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.452][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.456][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.458][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608842].
biodb.DEBUG[2025-01-18 16:03:28.475][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:28.476][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:28.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:28.520][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:28.524][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:28.526][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-01-18 16:03:28.527][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:28.529][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-01-18 16:03:28.531][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:28.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.555][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.557][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.563][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.565][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.572][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.578][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:28.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.618][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.620][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.621][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.622][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.633][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.638][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.640][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.645][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.646][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.662][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-01-18 16:03:28.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.686][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.687][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.688][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.689][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.690][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.693][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.695][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.700][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.702][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.707][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.708][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-01-18 16:03:28.725][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:28.726][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:28.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:28.748][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:28.752][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:28.754][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-01-18 16:03:28.755][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:28.757][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-01-18 16:03:28.759][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:28.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.784][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.800][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.806][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-01-18 16:03:28.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.846][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.847][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.855][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.862][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.867][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.868][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-01-18 16:03:28.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:28.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.909][private$selectFields]
biodb.TRACE[2025-01-18 16:03:28.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:28.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:28.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.917][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.922][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.924][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:28.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.929][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.930][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:28.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-01-18 16:03:28.947][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:28.948][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:28.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:28.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:28.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:28.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:28.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:28.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:28.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:28.993][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:28.997][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:28.999][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2025-01-18 16:03:29.001][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:29.002][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2025-01-18 16:03:29.004][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:29.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:29.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:29.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:29.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:29.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:29.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:29.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.030][private$selectFields]
biodb.TRACE[2025-01-18 16:03:29.032][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:29.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:29.034][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.039][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.044][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.051][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.053][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.057][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.058][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-01-18 16:03:29.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:29.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:29.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:29.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:29.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:29.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:29.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:29.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.100][private$selectFields]
biodb.TRACE[2025-01-18 16:03:29.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:29.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:29.103][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.108][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.113][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.114][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.115][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.120][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.121][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:29.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-01-18 16:03:29.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:29.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:29.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:29.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:29.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:29.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:29.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.163][private$selectFields]
biodb.TRACE[2025-01-18 16:03:29.165][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:29.166][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:29.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.172][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.178][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.180][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.185][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.186][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:29.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:29.205][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:29.206][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:29.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:29.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:29.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:29.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:29.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:29.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:29.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:29.228][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:29.232][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:29.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2025-01-18 16:03:29.235][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:29.237][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2025-01-18 16:03:29.239][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:29.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:29.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:29.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:29.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:29.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:29.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:29.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.264][private$selectFields]
biodb.TRACE[2025-01-18 16:03:29.265][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:29.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:29.268][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.273][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.277][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.280][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.284][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.286][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639742].
biodb.DEBUG[2025-01-18 16:03:29.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:29.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:29.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:29.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:29.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:29.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:29.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.327][private$selectFields]
biodb.TRACE[2025-01-18 16:03:29.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:29.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:29.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.331][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.335][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.340][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.341][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.342][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.347][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.348][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:29.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.364][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639183].
biodb.DEBUG[2025-01-18 16:03:29.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:29.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:29.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:29.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:29.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:29.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:29.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:29.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.389][private$selectFields]
biodb.TRACE[2025-01-18 16:03:29.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:29.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:29.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.398][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.404][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.405][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:29.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.409][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.411][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638885].
biodb.DEBUG[2025-01-18 16:03:29.428][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:29.429][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:29.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:29.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:29.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:29.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:29.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:29.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:29.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:29.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:29.519][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:29.523][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:29.524][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:29.527][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:29.584][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:29.586][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:29.588][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:29.589][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:29.860][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:29.862][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2025-01-18 16:03:29.867][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2025-01-18 16:03:29.870][private$loadEntries] Creating entries from ids [1]: "172632169".
biodb.DEBUG[2025-01-18 16:03:29.871][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:03:29.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172632169".
biodb.TRACE[2025-01-18 16:03:29.874][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:03:29.876][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:29.877][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:29.878][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:29.879][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:29.881][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:29.882][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-18 16:03:29.884][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172632169/XML".
biodb.DEBUG[2025-01-18 16:03:29.887][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:29.888][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:29.890][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172632169/XML".
biodb.TRACE[2025-01-18 16:03:29.961][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172632169/XML).
biodb.TRACE[2025-01-18 16:03:30.073][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172632169.xml"
biodb.DEBUG[2025-01-18 16:03:30.075][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:30.076][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:30.078][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:30.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:30.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:30.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:30.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:30.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:30.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:30.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:30.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.098][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.104][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.105][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.108][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.114][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.115][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.118][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.124][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.125][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.128][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.134][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.135][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.138][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.144][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.146][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.148][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.154][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:30.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:30.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.158][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.165][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:30.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:30.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.168][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:30.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:30.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:30.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:30.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.178][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:30.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:30.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:30.186][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:30.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.188][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:30.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.195][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:30.196][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:30.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:30.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.205][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:30.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:30.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.209][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:30.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.215][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:30.216][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:30.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.219][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:30.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:30.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.225][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:30.227][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:30.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.229][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:30.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.295][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:30.363][self$createEntryFromContent] Accession numbers: 172632169.
biodb.DEBUG[2025-01-18 16:03:30.365][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:30.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:30.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:30.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:30.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:30.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:30.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:30.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.389][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.391][private$selectFields]
biodb.TRACE[2025-01-18 16:03:30.392][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:30.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:30.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.400][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.413][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.416][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.421][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.422][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:30.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-01-18 16:03:30.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:30.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:30.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:30.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:30.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:30.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:30.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.463][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.464][private$selectFields]
biodb.TRACE[2025-01-18 16:03:30.465][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:30.466][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:30.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.473][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.477][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.479][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.480][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.483][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.485][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.486][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172632169].
biodb.DEBUG[2025-01-18 16:03:30.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:30.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:30.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:30.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:30.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:30.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:30.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.527][private$selectFields]
biodb.TRACE[2025-01-18 16:03:30.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:30.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:30.531][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.532][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.536][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.543][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:30.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.547][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.549][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:30.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:30.566][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:30.567][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:30.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:30.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:30.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:30.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:30.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:30.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:30.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:30.589][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:30.593][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:30.594][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:30.596][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:30.655][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:30.656][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:30.658][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:30.660][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:30.730][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:30.732][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2025-01-18 16:03:30.737][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2025-01-18 16:03:30.740][private$loadEntries] Creating entries from ids [1]: "172639112".
biodb.DEBUG[2025-01-18 16:03:30.741][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:03:30.743][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172639112".
biodb.TRACE[2025-01-18 16:03:30.744][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:03:30.746][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:30.747][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:30.748][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:30.749][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:30.750][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:30.752][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-18 16:03:30.754][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639112/XML".
biodb.DEBUG[2025-01-18 16:03:30.757][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:30.758][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:30.760][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639112/XML".
biodb.TRACE[2025-01-18 16:03:30.831][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639112/XML).
biodb.TRACE[2025-01-18 16:03:30.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639112.xml"
biodb.DEBUG[2025-01-18 16:03:30.941][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:30.942][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:30.944][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:30.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:30.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:30.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:30.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:30.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:30.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:30.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:30.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.964][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.971][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.972][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.974][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.981][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.982][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.985][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:30.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.991][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.992][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:30.995][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:30.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:30.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.001][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.003][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.005][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.012][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.013][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.015][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.022][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:31.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:31.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.026][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:31.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.032][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:31.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:31.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:31.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:31.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.046][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:31.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:31.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:31.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:31.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.056][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:31.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.063][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:31.064][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:31.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.067][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.073][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:31.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:31.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.077][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:31.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:31.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.084][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:31.085][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:31.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.087][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:31.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.094][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:31.095][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:31.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.098][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:31.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.104][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:31.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:31.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:31.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:31.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:31.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:31.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:31.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:31.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:31.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:31.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:31.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:31.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:31.241][self$createEntryFromContent] Accession numbers: 172639112.
biodb.DEBUG[2025-01-18 16:03:31.243][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:31.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.268][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.269][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.272][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.277][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.282][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.285][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.289][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.291][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639112].
biodb.DEBUG[2025-01-18 16:03:31.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.332][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.336][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.337][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.338][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.341][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.345][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.348][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.353][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.354][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-01-18 16:03:31.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.396][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.398][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.404][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.409][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.410][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.412][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.414][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.416][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.417][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2025-01-18 16:03:31.435][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:31.436][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:31.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:31.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:31.486][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:31.488][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-01-18 16:03:31.489][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:31.491][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-01-18 16:03:31.493][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:31.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.519][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.527][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.534][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.539][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.541][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.563][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-01-18 16:03:31.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.589][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.592][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.597][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.602][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.603][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.604][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.609][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.610][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.626][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-01-18 16:03:31.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.651][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.652][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.662][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.663][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.665][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.668][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.670][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.674][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-01-18 16:03:31.691][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:31.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:31.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:31.715][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:31.719][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:31.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-01-18 16:03:31.722][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:31.724][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-01-18 16:03:31.726][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:31.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.751][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.752][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.753][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.754][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.756][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.761][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.765][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.767][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.768][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.769][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.770][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.773][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.774][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.790][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-01-18 16:03:31.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.814][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.815][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.818][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.819][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.821][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.824][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.825][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.826][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.829][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.830][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.831][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.836][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.837][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.853][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2025-01-18 16:03:31.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:31.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.880][private$selectFields]
biodb.TRACE[2025-01-18 16:03:31.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:31.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:31.883][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.888][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.891][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.895][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:31.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.898][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.900][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.901][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:31.918][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621093].
biodb.DEBUG[2025-01-18 16:03:31.919][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:31.920][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:31.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:31.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:31.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:31.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:31.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:31.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:31.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:31.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:31.970][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:31.971][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:31.974][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:32.032][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:32.034][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:32.036][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:32.044][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:32.115][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:32.118][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2025-01-18 16:03:32.123][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2025-01-18 16:03:32.126][private$loadEntries] Creating entries from ids [1]: "172628475".
biodb.DEBUG[2025-01-18 16:03:32.127][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:03:32.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172628475".
biodb.TRACE[2025-01-18 16:03:32.130][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:03:32.132][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:32.133][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:32.134][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:32.136][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:32.137][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:32.138][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-18 16:03:32.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172628475/XML".
biodb.DEBUG[2025-01-18 16:03:32.143][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:32.144][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:32.146][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172628475/XML".
biodb.TRACE[2025-01-18 16:03:32.237][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172628475/XML).
biodb.TRACE[2025-01-18 16:03:32.332][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172628475.xml"
biodb.DEBUG[2025-01-18 16:03:32.336][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:32.337][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:32.339][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:32.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:32.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:32.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:32.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:32.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:32.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:32.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:32.356][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.360][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.367][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.368][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.370][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.377][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.378][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.381][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.388][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.389][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.398][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.399][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.409][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.410][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.412][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.419][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:32.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:32.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.423][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:32.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:32.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:32.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:32.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.434][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:32.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:32.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.440][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:32.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:32.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.444][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:32.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:32.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:32.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:32.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.454][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.461][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:32.462][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:32.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.464][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.466][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.471][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:32.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:32.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:32.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.481][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:32.483][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:32.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.485][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:32.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:32.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.491][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:32.493][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:32.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.495][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:32.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:32.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:32.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:32.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:32.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:32.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:32.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:32.630][self$createEntryFromContent] Accession numbers: 172628475.
biodb.DEBUG[2025-01-18 16:03:32.632][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:32.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:32.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:32.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:32.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:32.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:32.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:32.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.659][private$selectFields]
biodb.TRACE[2025-01-18 16:03:32.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:32.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:32.663][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.669][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.675][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.680][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.682][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:32.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-01-18 16:03:32.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:32.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:32.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:32.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:32.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:32.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:32.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:32.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.731][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.732][private$selectFields]
biodb.TRACE[2025-01-18 16:03:32.733][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:32.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:32.736][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.743][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.748][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.753][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.754][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.770][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-01-18 16:03:32.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:32.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:32.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:32.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:32.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:32.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:32.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.794][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.795][private$selectFields]
biodb.TRACE[2025-01-18 16:03:32.796][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:32.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:32.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.808][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.811][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:32.812][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.813][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.817][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:32.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172628475].
biodb.DEBUG[2025-01-18 16:03:32.834][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:32.835][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:32.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:32.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:32.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:32.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:32.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:32.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:32.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:32.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:32.862][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:32.863][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:32.866][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-01-18 16:03:32.926][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-01-18 16:03:32.928][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-01-18 16:03:32.929][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-01-18 16:03:32.931][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-01-18 16:03:33.169][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-18 16:03:33.172][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2025-01-18 16:03:33.177][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2025-01-18 16:03:33.179][private$loadEntries] Creating entries from ids [1]: "172639667".
biodb.DEBUG[2025-01-18 16:03:33.181][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:03:33.183][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172639667".
biodb.TRACE[2025-01-18 16:03:33.184][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:03:33.185][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:33.187][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:33.188][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:33.189][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:33.190][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:33.192][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-18 16:03:33.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639667/XML".
biodb.DEBUG[2025-01-18 16:03:33.197][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:33.198][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:33.200][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639667/XML".
biodb.TRACE[2025-01-18 16:03:33.281][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172639667/XML).
biodb.TRACE[2025-01-18 16:03:33.373][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639667.xml"
biodb.DEBUG[2025-01-18 16:03:33.375][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:33.376][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:33.378][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-01-18 16:03:33.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:33.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:33.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:33.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:33.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:33.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:33.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:33.394][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.396][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.398][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.405][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:33.406][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:33.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.410][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:33.411][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:33.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.413][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.415][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:33.416][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:33.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.418][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.420][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:33.421][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:33.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.423][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.425][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:33.426][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:33.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.428][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.430][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:33.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:33.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-01-18 16:03:33.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:33.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.440][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:33.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:33.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.443][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:33.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:33.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:33.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.454][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:33.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:33.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:33.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:33.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.464][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.470][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:33.472][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:33.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.474][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.476][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:33.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:33.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.479][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-01-18 16:03:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.486][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:33.487][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:33.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.489][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:33.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.496][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:33.497][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:33.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.500][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.506][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-01-18 16:03:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-01-18 16:03:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-01-18 16:03:33.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:33.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-01-18 16:03:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-01-18 16:03:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:33.580][self$createEntryFromContent] Accession numbers: 172639667.
biodb.DEBUG[2025-01-18 16:03:33.581][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:33.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:33.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:33.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:33.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:33.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:33.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:33.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.617][private$selectFields]
biodb.TRACE[2025-01-18 16:03:33.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:33.620][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:33.621][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.626][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.627][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.631][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.633][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.638][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:33.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639742].
biodb.DEBUG[2025-01-18 16:03:33.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:33.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:33.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:33.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:33.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:33.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:33.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.680][private$selectFields]
biodb.TRACE[2025-01-18 16:03:33.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:33.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:33.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.689][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.690][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.691][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.693][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.695][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.696][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.702][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:33.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639667].
biodb.DEBUG[2025-01-18 16:03:33.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:33.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:33.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:33.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:33.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:33.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:33.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:33.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.743][private$selectFields]
biodb.TRACE[2025-01-18 16:03:33.744][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:33.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:33.746][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.749][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.751][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.753][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.756][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.758][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.763][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.764][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:33.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639183].
biodb.DEBUG[2025-01-18 16:03:33.781][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:33.782][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:33.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:33.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:33.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:33.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:33.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:33.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:33.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:33.827][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:33.831][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:33.832][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2025-01-18 16:03:33.834][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:33.835][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2025-01-18 16:03:33.837][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:33.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:33.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:33.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:33.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:33.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:33.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:33.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.863][private$selectFields]
biodb.TRACE[2025-01-18 16:03:33.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:33.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:33.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.871][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.876][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.878][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.884][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:33.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-01-18 16:03:33.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:33.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:33.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:33.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:33.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:33.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:33.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.924][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.925][private$selectFields]
biodb.TRACE[2025-01-18 16:03:33.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:33.927][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:33.928][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.929][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.931][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.940][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.941][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.945][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.946][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172632169].
biodb.DEBUG[2025-01-18 16:03:33.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:33.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:33.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:33.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:33.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:33.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:33.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.987][private$selectFields]
biodb.TRACE[2025-01-18 16:03:33.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:33.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:33.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:33.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:33.995][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:33.996][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:33.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.000][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.001][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.002][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.007][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.008][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.024][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-01-18 16:03:34.026][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:34.031][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:34.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:34.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:34.057][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:34.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2025-01-18 16:03:34.060][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:34.062][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2025-01-18 16:03:34.064][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:34.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.088][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.089][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.097][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.098][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.102][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.103][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.104][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.106][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.107][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.110][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639112].
biodb.DEBUG[2025-01-18 16:03:34.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.150][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.151][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.153][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.154][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.155][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.160][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.164][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.167][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.171][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.173][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-01-18 16:03:34.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.214][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.217][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.222][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.227][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.230][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.236][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2025-01-18 16:03:34.256][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:34.257][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:34.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:34.304][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:34.308][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:34.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-01-18 16:03:34.311][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:34.313][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-01-18 16:03:34.315][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:34.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.340][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.341][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.345][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.355][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.357][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.358][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.364][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-01-18 16:03:34.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.405][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.406][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.410][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.414][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.419][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.420][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.422][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.423][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.424][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.427][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.428][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-01-18 16:03:34.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.474][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.475][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.478][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.480][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.483][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.488][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.491][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.495][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.497][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.513][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-01-18 16:03:34.514][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:34.515][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:34.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:34.537][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:34.541][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:34.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-01-18 16:03:34.544][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:34.546][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-01-18 16:03:34.548][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:34.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.574][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.579][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.583][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.589][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.590][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.595][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.596][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-01-18 16:03:34.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.638][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.639][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.647][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.652][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.655][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.661][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172629519].
biodb.DEBUG[2025-01-18 16:03:34.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.703][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.712][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.718][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.719][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.724][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.726][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172621093].
biodb.DEBUG[2025-01-18 16:03:34.743][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:34.745][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:34.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:34.791][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:34.796][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:34.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2025-01-18 16:03:34.799][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:34.801][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2025-01-18 16:03:34.803][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:34.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.828][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.829][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.832][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.833][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.834][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.838][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.839][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.840][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.845][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.850][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.851][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-01-18 16:03:34.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.900][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.908][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.909][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.913][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.915][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.920][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.921][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.937][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-01-18 16:03:34.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:34.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:34.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:34.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:34.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:34.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:34.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.962][private$selectFields]
biodb.TRACE[2025-01-18 16:03:34.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:34.964][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:34.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.971][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:34.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.984][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.985][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:34.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172628475].
biodb.DEBUG[2025-01-18 16:03:35.004][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:35.005][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:35.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:35.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:35.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:35.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:35.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:35.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:35.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:35.027][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:35.031][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:35.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2025-01-18 16:03:35.035][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:35.036][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2025-01-18 16:03:35.038][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:35.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:35.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:35.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:35.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:35.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:35.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:35.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:35.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.064][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.065][private$selectFields]
biodb.TRACE[2025-01-18 16:03:35.066][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:35.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:35.068][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.070][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.071][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.073][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.078][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.080][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.085][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.087][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639742].
biodb.DEBUG[2025-01-18 16:03:35.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:35.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:35.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:35.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:35.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:35.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:35.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:35.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.128][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.129][private$selectFields]
biodb.TRACE[2025-01-18 16:03:35.130][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:35.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:35.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.137][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.142][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.143][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.144][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.150][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:35.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639667].
biodb.DEBUG[2025-01-18 16:03:35.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:35.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:35.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:35.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:35.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:35.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:35.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:35.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.191][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.192][private$selectFields]
biodb.TRACE[2025-01-18 16:03:35.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:35.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:35.196][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.201][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.207][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.208][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-01-18 16:03:35.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.213][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.214][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-01-18 16:03:35.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639183].
biodb.DEBUG[2025-01-18 16:03:35.232][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:35.233][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:35.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:35.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:35.271][biodb::testThat]
biodb.INFO [2025-01-18 16:03:35.272][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-01-18 16:03:35.273][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:35.274][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.283][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-18 16:03:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-18 16:03:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:35.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:35.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:35.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:35.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:35.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:35.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:35.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:35.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:35.360][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:35.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-01-18 16:03:35.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:35.365][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-01-18 16:03:35.367][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:35.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:35.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:35.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:35.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:35.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:35.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:35.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:35.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:35.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:35.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:35.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:35.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.539][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:35.541][private$selectFields]
biodb.TRACE[2025-01-18 16:03:35.542][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:35.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:35.544][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:35.545][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:35.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:35.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.549][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.550][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.551][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.554][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.555][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.556][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.559][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.561][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.563][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.564][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.565][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.568][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.572][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.574][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:35.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:35.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:35.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:35.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.582][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.583][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.584][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.588][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:35.589][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.592][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.593][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.596][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.601][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.602][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:35.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:35.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.611][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.612][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.613][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.617][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.618][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:35.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:35.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.625][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.626][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.627][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.630][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.631][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.632][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.634][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.636][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.637][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.640][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.642][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.645][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.646][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.649][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.650][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:35.651][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:35.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:35.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:35.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.658][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.663][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.664][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:35.665][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:35.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.677][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.679][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:35.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:35.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.687][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.688][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.690][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.692][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.693][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.694][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.697][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.698][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:35.699][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:35.700][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:35.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:35.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.704][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.705][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.706][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.710][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.711][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.714][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.715][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.716][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.719][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.721][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.723][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.724][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.731][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.734][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:35.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:35.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.738][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:35.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:35.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.743][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.747][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.748][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:35.750][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:35.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.752][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.753][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.757][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.761][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:35.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:35.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.771][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.772][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.773][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.776][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.777][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.778][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:35.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.780][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.782][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:35.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:35.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:35.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:35.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:35.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:35.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:35.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:35.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:35.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:35.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:35.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.916][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.921][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:35.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:35.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.925][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:35.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:35.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:35.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:35.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:35.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:35.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:35.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:35.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:35.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:35.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:35.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-01-18 16:03:36.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:36.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:36.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:36.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:36.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:36.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:36.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:36.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.213][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:36.214][private$selectFields]
biodb.TRACE[2025-01-18 16:03:36.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:36.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:36.217][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:36.219][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.222][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.223][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.225][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.227][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.228][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.229][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.233][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.234][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.236][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.238][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.239][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.242][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.244][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.255][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.260][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.261][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.263][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.266][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.267][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.270][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.274][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.276][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.279][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.280][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.284][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.285][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.287][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.289][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.290][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.291][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.295][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.300][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.301][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.305][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.306][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.308][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.309][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.311][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.313][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.314][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.316][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.318][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.319][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.321][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.328][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.330][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.333][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.334][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.335][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.338][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.339][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.340][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.342][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.344][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.347][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.352][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.353][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.354][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.357][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.362][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.363][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.364][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.366][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.368][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.369][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.371][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.372][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:36.374][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:36.375][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.378][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.380][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.381][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.383][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.384][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.386][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.388][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.389][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.391][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.393][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.394][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.395][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.398][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.399][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.400][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.404][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.407][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.408][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.412][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.417][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.418][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.419][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.422][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.423][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.424][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.426][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.428][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.431][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.432][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.436][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.441][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.442][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.443][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.445][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.447][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.448][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.450][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.452][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.593][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.709][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-01-18 16:03:36.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:36.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:36.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:36.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:36.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:36.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:36.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.876][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:36.877][private$selectFields]
biodb.TRACE[2025-01-18 16:03:36.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:36.879][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:36.881][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:36.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.885][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.887][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.888][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.890][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.891][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.893][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.895][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.896][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.898][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.900][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.901][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.902][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.905][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.906][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.907][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.909][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.911][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.914][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:36.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:36.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:36.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.924][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.925][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:36.926][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:36.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.929][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:36.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:36.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:36.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:36.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.943][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.949][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.950][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:36.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.958][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.960][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.962][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:36.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.964][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.965][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:36.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:36.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.969][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.970][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.972][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:36.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.974][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.975][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.976][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:36.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.979][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.980][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.981][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:36.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.983][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.985][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.986][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:36.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.988][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.989][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.991][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:36.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.993][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.994][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:36.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:36.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:36.998][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:36.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.003][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.008][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.009][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.010][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.012][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.014][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.015][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.017][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.022][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.028][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.029][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.033][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.034][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.038][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.039][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.041][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.042][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:37.044][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:37.045][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.048][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.050][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.051][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.054][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.056][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.059][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.061][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.063][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.064][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.065][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.068][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.069][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.070][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.073][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.077][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.082][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.087][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.088][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.090][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.092][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.093][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.094][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.097][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.101][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.103][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.106][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.111][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.112][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.114][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.117][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.118][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.121][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.122][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:37.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.268][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172593299, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-4-imidazolyl)methanol, (3-ethyl-5-methylsulfonylimidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, ...].
biodb.DEBUG[2025-01-18 16:03:37.381][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:37.382][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:37.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:37.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:37.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:37.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:37.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:37.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:37.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:37.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:37.411][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:37.412][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-01-18 16:03:37.414][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:37.416][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-01-18 16:03:37.418][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:37.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:37.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:37.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:37.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:37.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:37.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:37.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:37.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.590][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:37.592][private$selectFields]
biodb.TRACE[2025-01-18 16:03:37.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:37.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:37.595][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:37.596][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.601][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.602][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.606][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.607][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.610][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.611][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.612][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.616][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.617][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.619][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.621][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.622][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.629][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.634][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.640][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.641][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.645][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.648][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.655][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.658][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.663][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.664][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.666][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.669][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.671][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.674][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.679][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.680][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.683][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.684][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.685][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.688][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.689][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.690][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.692][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.694][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.695][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.697][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.699][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.700][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.702][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.703][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.705][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.707][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.712][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.718][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.719][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.721][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.723][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.731][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.732][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.736][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.742][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.743][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.746][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.747][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.748][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.751][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.752][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:37.753][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:37.754][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.758][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.759][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.760][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.763][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.764][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.765][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.768][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.769][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.770][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.772][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.774][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.783][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.784][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.786][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.790][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.794][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.798][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.803][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.804][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.806][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.808][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.809][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.813][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:37.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.818][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:37.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:37.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.822][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:37.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.827][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.828][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.830][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:37.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.832][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.833][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.835][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:37.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.837][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.838][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:37.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:37.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:37.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:37.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:37.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:37.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:37.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:37.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.977][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:37.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:37.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-01-18 16:03:38.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:38.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:38.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:38.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:38.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:38.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:38.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.262][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:38.263][private$selectFields]
biodb.TRACE[2025-01-18 16:03:38.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:38.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:38.266][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:38.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.271][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.272][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.273][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.277][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.278][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.280][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.281][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.283][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.285][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.286][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.287][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.289][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.291][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.292][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.295][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.297][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.300][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.304][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.308][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.309][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.311][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.313][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.314][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.318][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.322][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.324][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.327][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.332][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.333][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.334][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.338][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.339][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.341][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.342][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.347][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.348][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.351][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.352][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.353][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.355][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.356][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.358][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.360][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.361][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.365][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.367][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.369][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.371][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.374][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.379][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.384][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.385][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.386][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.388][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.389][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.393][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.395][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.398][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.399][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.407][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.408][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.409][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.412][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.413][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.414][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.416][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.418][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:38.419][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:38.420][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.424][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.425][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.426][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.428][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.429][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.431][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.434][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.435][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.438][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.439][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.440][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.442][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.444][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.445][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.448][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.452][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.456][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.461][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.462][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.463][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.466][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.467][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.468][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.470][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.476][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.480][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.484][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.486][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.487][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.489][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.490][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.492][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.494][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.495][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.644][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-01-18 16:03:38.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:38.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:38.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:38.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:38.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:38.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:38.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:38.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.915][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:38.916][private$selectFields]
biodb.TRACE[2025-01-18 16:03:38.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:38.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:38.920][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:38.921][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:38.922][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:38.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.924][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.925][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.927][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:38.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.929][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.930][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.931][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:38.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.934][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.935][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.936][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:38.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.940][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.941][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:38.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.943][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.944][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.946][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:38.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.949][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:38.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:38.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.953][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:38.955][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:38.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.957][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.958][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:38.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.962][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.963][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:38.964][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:38.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.967][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.968][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:38.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.971][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.973][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:38.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.977][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:38.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:38.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.981][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:38.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.986][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.987][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.993][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:38.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:38.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:38.997][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:38.999][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.002][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.007][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.008][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.011][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.012][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.013][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.015][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.017][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.018][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.020][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.021][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.023][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.026][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.027][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.031][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.032][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.034][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.039][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.040][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.044][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.045][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.046][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.048][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.050][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.051][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.054][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.062][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.067][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.068][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.070][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.072][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.073][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.074][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.077][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.078][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:39.079][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:39.080][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.084][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.085][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.086][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.088][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.089][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.091][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.094][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.095][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.098][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.099][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.100][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.102][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.104][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.105][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.108][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.112][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.118][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.119][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.121][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.122][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.124][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.127][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.130][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.135][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.136][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.140][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.141][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.145][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.146][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.147][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.150][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.152][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.155][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.292][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.297][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172524779, ethyl 6-methoxy-5-nitro-pyridine-3-carboxylate, 6-methoxy-5-nitro-3-pyridinecarboxylic acid ethyl ester, ethyl 6-methoxy-5-nitropyridine-3-carboxylate, ethyl 6-methoxy-5-nitro-pyridine-3-carboxylate, ...].
biodb.DEBUG[2025-01-18 16:03:39.406][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:39.407][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:39.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:39.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:39.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:39.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:39.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:39.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:39.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:39.438][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:39.442][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:39.443][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-01-18 16:03:39.445][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:39.446][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-01-18 16:03:39.448][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:39.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:39.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:39.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:39.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:39.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:39.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:39.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.626][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:39.627][private$selectFields]
biodb.TRACE[2025-01-18 16:03:39.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:39.629][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:39.630][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:39.631][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.635][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.636][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.637][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.640][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.641][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.642][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.646][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.647][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.649][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.650][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.652][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.654][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.655][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.656][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.663][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.674][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.675][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.677][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.679][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.687][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.688][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.692][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.693][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.696][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.698][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.699][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.702][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.704][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.706][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.707][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:39.708][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:39.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.715][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.717][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.718][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.720][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.721][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.723][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.726][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.727][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.731][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.732][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.734][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.736][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.737][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.739][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.740][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.744][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.749][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.753][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.755][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.756][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.758][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.761][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.763][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.768][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.769][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.772][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.777][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.779][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.780][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.782][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.784][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.785][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.787][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.789][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:39.790][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:39.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.792][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.794][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:39.800][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:39.802][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.806][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.807][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.809][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.811][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.812][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.813][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.817][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.818][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.821][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.822][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.823][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.825][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.827][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.828][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.830][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.832][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.835][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.836][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.840][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.842][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:39.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.845][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.846][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:39.847][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:39.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.850][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:39.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.855][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:39.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:39.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:39.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.865][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.866][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:39.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.870][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.871][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.872][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:39.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.876][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.877][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:39.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.881][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:39.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:39.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:39.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:39.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:39.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:39.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.026][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-01-18 16:03:40.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:40.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:40.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:40.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:40.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:40.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:40.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:40.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.250][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.324][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:40.326][private$selectFields]
biodb.TRACE[2025-01-18 16:03:40.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:40.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:40.329][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:40.330][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.334][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.335][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.336][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.340][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.341][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.344][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.345][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.346][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.348][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.350][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.351][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.353][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.354][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.356][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.358][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.359][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.368][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.372][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.374][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.375][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.377][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.378][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.383][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.388][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.392][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.397][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.398][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.399][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.403][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.404][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.406][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.407][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:40.409][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:40.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.412][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.413][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.416][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.418][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.419][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.421][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.422][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.424][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.426][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.427][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.429][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.431][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.432][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.433][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.436][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.437][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.438][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.441][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.442][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.446][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.447][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.450][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.452][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.453][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.455][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.456][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.458][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.460][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.461][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.465][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.468][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.470][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.471][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.476][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.480][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.481][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.482][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.485][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.486][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.487][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.489][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.491][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:40.492][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.494][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.495][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:40.497][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:40.498][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.503][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.504][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.507][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.508][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.509][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.511][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.513][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.514][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.516][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.517][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.519][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.521][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.522][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.524][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.526][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.527][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.531][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.535][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.537][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.538][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.542][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.543][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.545][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.546][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.550][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.551][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.553][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.555][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.556][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.560][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.564][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.566][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.567][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.569][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.571][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.572][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.574][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.576][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:40.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.717][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-01-18 16:03:40.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:40.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:40.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:40.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:40.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:40.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:40.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:40.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:40.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:40.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:40.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:40.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:40.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:40.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.005][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.015][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:41.016][private$selectFields]
biodb.TRACE[2025-01-18 16:03:41.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:41.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:41.020][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:41.021][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.026][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.027][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.031][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.032][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.035][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.036][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.037][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.044][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.046][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.047][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.050][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.051][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.052][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.055][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.056][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.060][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.064][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.069][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.070][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.072][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.074][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.075][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.079][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.084][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.085][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.088][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.090][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.091][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.095][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.096][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.098][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.099][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.101][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.103][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.104][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.105][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.108][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.109][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.113][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.114][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.115][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.119][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.120][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.122][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.123][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.125][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.127][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.128][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.130][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.132][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.133][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.134][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.137][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.138][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.141][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.146][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.151][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.152][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.154][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.156][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.157][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.161][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.162][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.166][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.167][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.170][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.175][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.176][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.178][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.180][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.181][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.183][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.185][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.186][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.187][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.190][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.191][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:41.192][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:41.193][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.197][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.198][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.200][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.202][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.203][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.204][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.207][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.208][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.209][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.211][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.213][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.214][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.218][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.219][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.221][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.222][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.226][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.231][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.233][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.236][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.237][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.238][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.242][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.245][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.251][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.255][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.260][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.261][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.262][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.266][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.268][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.270][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.271][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:41.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172593299, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-4-imidazolyl)methanol, (3-ethyl-5-methylsulfonylimidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, ...].
biodb.DEBUG[2025-01-18 16:03:41.531][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:41.532][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:41.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:41.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:41.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:41.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:41.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:41.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:41.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:41.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:41.560][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:41.561][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-01-18 16:03:41.563][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:41.564][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-01-18 16:03:41.566][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:41.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:41.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:41.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:41.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:41.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:41.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:41.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.747][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:41.749][private$selectFields]
biodb.TRACE[2025-01-18 16:03:41.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:41.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:41.752][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:41.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.757][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.758][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.760][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.763][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.764][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.767][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.768][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.769][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.772][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.773][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.774][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.776][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.778][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.779][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.781][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.782][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.786][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.789][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.791][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.796][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.797][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.798][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.801][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.802][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.805][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.810][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.815][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.820][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.821][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.822][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.825][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.826][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.827][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.830][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.831][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.832][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.835][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.836][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.839][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.841][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.842][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.844][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.845][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.847][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.849][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.850][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.852][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.854][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.855][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.856][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.860][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.861][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.869][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.870][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.872][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.877][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.884][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.885][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.886][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.889][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.890][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.891][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.895][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.898][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.903][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.908][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.909][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.911][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.913][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.914][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.915][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:41.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.918][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.919][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.920][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:41.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.923][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.924][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:41.925][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:41.926][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:41.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:41.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.930][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.931][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.932][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.935][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.936][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.937][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:41.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.940][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.941][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.942][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:41.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.945][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.946][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.948][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:41.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.950][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.951][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.953][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:41.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.955][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.957][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:41.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:41.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.960][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:41.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:41.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.965][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:41.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.970][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.971][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:41.972][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:41.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.975][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.976][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:41.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.980][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.983][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:41.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.985][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.986][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:41.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:41.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.990][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.991][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:41.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:41.995][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:41.996][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.998][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:41.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.000][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.001][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.002][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.005][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.006][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.144][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.154][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-01-18 16:03:42.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:42.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:42.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:42.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:42.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:42.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:42.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:42.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.379][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:42.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.457][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:42.459][private$selectFields]
biodb.TRACE[2025-01-18 16:03:42.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:42.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:42.462][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:42.464][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.467][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.468][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.470][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.472][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.474][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.475][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.477][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.479][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.480][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.482][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.483][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.485][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.488][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.490][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.497][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.507][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.508][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.510][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.512][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.513][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.518][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.519][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.521][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.526][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.533][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.534][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.537][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.538][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.539][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.542][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.543][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:42.544][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:42.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.547][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.551][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.553][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.554][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.556][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.557][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.559][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.568][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.572][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.573][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.575][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.576][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.585][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.590][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.591][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.592][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.594][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.596][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.599][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.604][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.606][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.609][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.614][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.615][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.617][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.619][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.620][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.622][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.625][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:42.626][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:42.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.629][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.630][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:42.631][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:42.632][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.637][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.639][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.641][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.642][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.643][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.647][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.648][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.650][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.652][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.653][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.655][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.657][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.658][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.662][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.665][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.667][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.670][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.676][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.678][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.680][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.685][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.690][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.699][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.706][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.707][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.711][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.712][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.714][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.716][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:42.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.816][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:42.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-01-18 16:03:42.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:42.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:42.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:42.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:42.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:42.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:42.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:42.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:42.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.070][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:43.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.153][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:43.154][private$selectFields]
biodb.TRACE[2025-01-18 16:03:43.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:43.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:43.158][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:43.159][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.164][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.165][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.169][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.170][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.172][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.173][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.175][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.178][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.180][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.182][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.183][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.184][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.187][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.188][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.196][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.201][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.202][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.203][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.207][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.211][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.215][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.216][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.220][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.225][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.226][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.227][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.230][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.231][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.232][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.236][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:43.237][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:43.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.241][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.245][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.247][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.249][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.250][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.251][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.254][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.255][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.256][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.260][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.261][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.263][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.265][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.266][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.268][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.269][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.273][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.278][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.283][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.284][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.285][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.289][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.292][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.293][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.297][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.300][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.302][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.307][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.309][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.312][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.313][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.314][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.316][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.318][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:43.319][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:43.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.321][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.322][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:43.324][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:43.325][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.328][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.330][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.331][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.333][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.334][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.336][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.338][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.339][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.341][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.344][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.346][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.348][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.349][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.351][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.353][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.354][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.358][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.362][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.364][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.365][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.368][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.370][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.372][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.373][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.377][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.379][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.393][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.394][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.397][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.399][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.402][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:43.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.550][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.554][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.660][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172524779, ethyl 6-methoxy-5-nitro-pyridine-3-carboxylate, 6-methoxy-5-nitro-3-pyridinecarboxylic acid ethyl ester, ethyl 6-methoxy-5-nitropyridine-3-carboxylate, ethyl 6-methoxy-5-nitro-pyridine-3-carboxylate, ...].
biodb.DEBUG[2025-01-18 16:03:43.661][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:43.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:43.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:43.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:43.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:43.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:43.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:43.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:43.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:43.734][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:43.738][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:43.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-01-18 16:03:43.741][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:43.743][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-01-18 16:03:43.745][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:43.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:43.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:43.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:43.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:43.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:43.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:43.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:43.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:43.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.918][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:43.919][private$selectFields]
biodb.TRACE[2025-01-18 16:03:43.920][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:43.921][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:43.923][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:43.924][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:43.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:43.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.929][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.930][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:43.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.932][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.939][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.940][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:43.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.943][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.944][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.945][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.949][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.950][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:43.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.952][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.954][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.955][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:43.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.957][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.958][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:43.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:43.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.962][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:43.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:43.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.967][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:43.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.972][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.973][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:43.974][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:43.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.978][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:43.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.981][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.982][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:43.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.986][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.987][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:43.989][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:43.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.991][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:43.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:43.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:43.997][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.998][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:43.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.002][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.003][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.005][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.007][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.010][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.011][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.013][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.015][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.016][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.017][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.020][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.021][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.022][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.026][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.027][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.031][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.032][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.034][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.035][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.039][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.044][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.049][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.050][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.051][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.055][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.056][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.059][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.063][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.064][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.068][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.069][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.070][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.073][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.074][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.075][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.078][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.079][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.080][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.082][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.084][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:44.085][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:44.086][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.090][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.091][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.092][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.096][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.097][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.099][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.101][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.102][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.104][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.105][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.107][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.110][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.111][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.114][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.115][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.119][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.123][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.128][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.130][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.131][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.133][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.134][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.138][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.139][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.143][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.144][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.148][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.149][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.150][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.153][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.154][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.155][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.159][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.160][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.164][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.299][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.304][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-01-18 16:03:44.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:44.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:44.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:44.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:44.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:44.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:44.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.523][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.591][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:44.592][private$selectFields]
biodb.TRACE[2025-01-18 16:03:44.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:44.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:44.595][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:44.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.601][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.603][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.606][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.608][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.610][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.611][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.612][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.616][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.617][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.621][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.622][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.626][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.629][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.634][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.640][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.641][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.645][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.648][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.654][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.658][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.662][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.664][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.665][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.667][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.668][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.670][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.672][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.673][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.677][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.678][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.679][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.683][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.684][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.686][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.687][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.689][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.691][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.692][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.693][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.696][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.697][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.698][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.700][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.705][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.715][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.716][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.717][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.719][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.724][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.725][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.729][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.730][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.734][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.739][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.740][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.741][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.743][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.745][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.751][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.754][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.755][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:44.756][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:44.758][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.761][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.762][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.764][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.767][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.769][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.771][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.772][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.773][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.776][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.777][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.778][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.780][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.782][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.783][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.785][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.786][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.790][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.791][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.792][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.795][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.800][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.801][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.802][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.805][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.809][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.814][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.815][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:44.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:44.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.819][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.821][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:44.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.825][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.826][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:44.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.828][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.829][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.831][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:44.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.834][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:44.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:44.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:44.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:44.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:44.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.969][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.973][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:44.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:44.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:44.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:44.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172622621, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, ...].
biodb.DEBUG[2025-01-18 16:03:45.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:45.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:45.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:45.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:45.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:45.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:45.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.261][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:45.262][private$selectFields]
biodb.TRACE[2025-01-18 16:03:45.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:45.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:45.266][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:45.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.270][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.272][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.273][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.277][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.278][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.280][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.281][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.283][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.285][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.286][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.288][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.290][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.291][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.292][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.295][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.296][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.297][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.300][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.302][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.304][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.309][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.310][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.312][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.314][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.317][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.324][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.325][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.329][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.333][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.335][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.336][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.338][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.339][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.341][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.344][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.348][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.349][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.351][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.353][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.354][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.355][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.358][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.359][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.360][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.365][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.369][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.370][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.372][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.373][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.375][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.377][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.380][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.383][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.384][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.388][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.389][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.392][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.393][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.394][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.398][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.399][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.402][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.406][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.411][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.412][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.413][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.416][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.417][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.418][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.421][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.422][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:45.423][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:45.424][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.428][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.429][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.430][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.434][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.435][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.438][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.439][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.440][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.442][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.444][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.445][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.448][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.450][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.452][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.453][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.457][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.462][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.467][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.468][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.469][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.472][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.473][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.477][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.481][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.483][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.486][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.491][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.492][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.494][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.496][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.498][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.501][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.502][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:45.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.603][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.648][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172602027, 3-isopropyl-6-[(Z)-prop-1-enyl]-5-vinyl-pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]-4-pyrimidinone, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, ...].
biodb.DEBUG[2025-01-18 16:03:45.758][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:45.759][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:45.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:45.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:45.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:45.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:45.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:45.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:45.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:45.784][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:45.788][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:45.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-01-18 16:03:45.791][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:45.793][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-01-18 16:03:45.795][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:45.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:45.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:45.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:45.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:45.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:45.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:45.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:45.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:45.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:45.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.903][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:45.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:45.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:45.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:45.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:45.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.966][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:45.967][private$selectFields]
biodb.TRACE[2025-01-18 16:03:45.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:45.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:45.977][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:45.978][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:45.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:45.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.982][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.983][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.984][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:45.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.987][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.988][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.989][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:45.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.991][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.992][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.994][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:45.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:45.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:45.997][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:45.999][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.002][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.010][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.015][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.020][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.021][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.022][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.034][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.035][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.037][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.039][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.044][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.045][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.046][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.049][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.050][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.051][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.054][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.059][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.061][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.063][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.064][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.065][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.068][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.069][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.070][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.072][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.074][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.075][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.077][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.078][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.080][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.082][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.083][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.087][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.088][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.092][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.096][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.098][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.099][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.101][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.103][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.106][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.111][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.112][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.121][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.122][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.123][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.127][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.128][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.131][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.132][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:46.133][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:46.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.138][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.139][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.140][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.143][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.144][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.145][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.148][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.150][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.152][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.153][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.155][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.158][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.159][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.163][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.169][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.174][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.179][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.180][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.181][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.184][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.185][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.186][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.188][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.193][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.194][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.203][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.204][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.205][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.208][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.209][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.210][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.212][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.214][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:46.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.390][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-01-18 16:03:46.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:46.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:46.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:46.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:46.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:46.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:46.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:46.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.611][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.679][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:46.680][private$selectFields]
biodb.TRACE[2025-01-18 16:03:46.682][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:46.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:46.684][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:46.685][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.689][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.690][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.691][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.695][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.696][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.698][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.700][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.701][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.704][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.706][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.708][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.709][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.711][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.713][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.719][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.720][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.723][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.724][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.725][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.728][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.729][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.730][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.732][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.734][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.737][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.739][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.740][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.742][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.743][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.745][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.747][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.752][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.754][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.755][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.757][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.759][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.760][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.764][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.767][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.769][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.770][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.772][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.774][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.775][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.778][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.779][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.780][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.783][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.784][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.785][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.789][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.790][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.794][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.798][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.803][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.804][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.805][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.808][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.809][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.810][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.813][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.814][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.817][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.822][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.824][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.855][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.861][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.863][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.865][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.866][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.867][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.870][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.871][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:46.872][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:46.873][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.877][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.878][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.880][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.882][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.883][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.884][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.887][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.888][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.889][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.893][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.894][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:46.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.896][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.898][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.899][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:46.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.901][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.902][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:46.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:46.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.906][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:46.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:46.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.911][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:46.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.916][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.917][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:46.918][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:46.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.920][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:46.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.925][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:46.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.930][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.931][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:46.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:46.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.935][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:46.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.939][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.941][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.942][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:46.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.944][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.945][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.947][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:46.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.949][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.950][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:46.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:46.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:46.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:47.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.091][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:47.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172629519, (Z)-1-(3-chloro-5-methyl-pyrazin-2-yl)-1-hydroxy-pent-1-en-3-one, (Z)-1-(3-chloro-5-methyl-2-pyrazinyl)-1-hydroxy-1-penten-3-one, (Z)-1-(3-chloro-5-methylpyrazin-2-yl)-1-hydroxypent-1-en-3-one, (Z)-1-(3-chloranyl-5-methyl-pyrazin-2-yl)-1-oxidanyl-pent-1-en-3-one, ...].
biodb.DEBUG[2025-01-18 16:03:47.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:47.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:47.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:47.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:47.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:47.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:47.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:47.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:47.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:47.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.386][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:47.388][private$selectFields]
biodb.TRACE[2025-01-18 16:03:47.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:47.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:47.391][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:47.392][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.397][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.398][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.402][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.403][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.405][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.407][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.408][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.411][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.413][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.415][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.416][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.417][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.420][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.421][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.425][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.429][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.434][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.435][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:47.437][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:47.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.439][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.440][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.444][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.448][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.450][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.453][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.458][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.459][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.461][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.463][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.464][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.465][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.469][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.472][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.474][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.475][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.477][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.478][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.480][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.482][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.483][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.484][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.488][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.489][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.493][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.494][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.496][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.498][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.501][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.506][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.511][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.512][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:47.513][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:47.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.515][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.520][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.525][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.526][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.530][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.535][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.536][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.537][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.539][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.541][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.542][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.544][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.545][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-01-18 16:03:47.547][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-01-18 16:03:47.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.551][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.552][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.554][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.556][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.557][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.559][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.568][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.572][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.573][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.575][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.576][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.585][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.589][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.591][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.594][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.599][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.604][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.610][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.611][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.614][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.616][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.618][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.619][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:47.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:47.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:47.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172621093, 1-isopropyl-3-methyl-piperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-ylpiperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-ylpiperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-yl-piperazin-4-ide;rubidium(1+), ...].
biodb.DEBUG[2025-01-18 16:03:47.862][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:47.863][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:47.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:47.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:47.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:47.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:47.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:47.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:47.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:47.894][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:47.898][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:47.900][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-01-18 16:03:47.901][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:47.903][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-01-18 16:03:47.905][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:47.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:47.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:47.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:47.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:47.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:47.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:47.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:47.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:47.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:47.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:47.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:47.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:47.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:47.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:47.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.094][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:48.095][private$selectFields]
biodb.TRACE[2025-01-18 16:03:48.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:48.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:48.099][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:48.100][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.104][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.105][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.106][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.110][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.111][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.114][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.115][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.116][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.118][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.120][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.121][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.123][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.124][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.126][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.128][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.131][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.133][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.134][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.135][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.138][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.140][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.143][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.144][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.145][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.149][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.152][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.153][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.158][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.168][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.169][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.172][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.173][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.174][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.176][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.178][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.179][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.181][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.182][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.186][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.187][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.189][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.192][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.193][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.196][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.197][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.198][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.201][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.202][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.203][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.205][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.207][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.208][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.210][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.212][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.215][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.220][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.223][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.225][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.226][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.227][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.230][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.231][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.241][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.249][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.250][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.251][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.254][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.255][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.256][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.260][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.261][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.263][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.265][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:48.266][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:48.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.271][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.272][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.273][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.276][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.277][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.278][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.281][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.282][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.283][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.285][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.287][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.288][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.290][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.291][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.293][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.295][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.297][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.300][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.306][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.311][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.312][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.314][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.316][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.317][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.321][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.326][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.327][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.331][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.337][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.339][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.341][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.342][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.344][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.347][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.483][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-01-18 16:03:48.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:48.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:48.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:48.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:48.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:48.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:48.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.705][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.710][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.773][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.783][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:48.784][private$selectFields]
biodb.TRACE[2025-01-18 16:03:48.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:48.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:48.788][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:48.789][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.792][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.794][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.795][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.798][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.800][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.802][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.803][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.804][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.807][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.808][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.809][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.812][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.813][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.814][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.818][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.821][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.828][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.831][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.832][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.833][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.835][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.837][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.840][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.845][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.846][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.850][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.855][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.856][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.857][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.861][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.862][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.864][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.865][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.867][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.869][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.875][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.876][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.880][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.881][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.885][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.886][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.888][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.889][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.891][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.894][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.895][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.898][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.899][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.908][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.909][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.913][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.915][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.918][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.919][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:48.920][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:48.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.922][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.924][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:48.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.928][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:48.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.932][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.933][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:48.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:48.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.937][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:48.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.942][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.943][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.944][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:48.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.946][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.947][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.949][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:48.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.951][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.952][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.954][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:48.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.956][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.957][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:48.958][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:48.959][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:48.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:48.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.963][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.964][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.965][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:48.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.968][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.969][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.970][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:48.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.973][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.974][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.975][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:48.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.977][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.978][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.980][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:48.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.982][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.983][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.984][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:48.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.987][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.988][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:48.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:48.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.991][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:48.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:48.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:48.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:48.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:48.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.002][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.003][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.007][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.010][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.015][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.016][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.020][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.026][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.027][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.031][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.032][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.035][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.036][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.178][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172622621, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, ...].
biodb.DEBUG[2025-01-18 16:03:49.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:49.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:49.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:49.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:49.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:49.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:49.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:49.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.468][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.473][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:49.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:49.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.478][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:49.479][private$selectFields]
biodb.TRACE[2025-01-18 16:03:49.480][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:49.481][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:49.482][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:49.484][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.489][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.490][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.493][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.495][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.497][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.498][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.500][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.503][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.505][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.507][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.508][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.510][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.512][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.513][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.522][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.523][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.524][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.527][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.528][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.529][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.533][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.536][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.541][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.543][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.546][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.547][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.551][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.552][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.554][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.556][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.557][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.559][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.562][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:49.564][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:49.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.567][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.571][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.572][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.573][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.576][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.577][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.578][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.581][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.582][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.583][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.586][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.587][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.588][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.591][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.592][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.593][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.596][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.597][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.603][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.610][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.611][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.613][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.616][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.625][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.626][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.630][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.635][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.636][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.637][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.640][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.641][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.642][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.646][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:49.647][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:49.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.649][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.651][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:49.652][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:49.653][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.657][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.658][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.659][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.662][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.663][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.664][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.667][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.668][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.669][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.671][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.673][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.674][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.676][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.678][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.679][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.683][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.684][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.686][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.691][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.696][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.697][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.698][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.702][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.706][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.715][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.727][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.728][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.731][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.732][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.733][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.736][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.737][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:49.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:49.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:49.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:49.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:49.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:49.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:49.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.883][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:49.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:49.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172602027, 3-isopropyl-6-[(Z)-prop-1-enyl]-5-vinyl-pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]-4-pyrimidinone, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, ...].
biodb.DEBUG[2025-01-18 16:03:49.991][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:49.992][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-18 16:03:49.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:49.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:49.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:50.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:50.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:50.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:50.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:50.017][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-01-18 16:03:50.021][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-18 16:03:50.022][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-01-18 16:03:50.024][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-18 16:03:50.026][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-01-18 16:03:50.028][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-18 16:03:50.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:50.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:50.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:50.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:50.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:50.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:50.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:50.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.217][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:50.219][private$selectFields]
biodb.TRACE[2025-01-18 16:03:50.220][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:50.221][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:50.222][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:50.223][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.227][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.228][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.229][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.233][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.234][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.237][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.238][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.239][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.243][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.244][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.248][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.249][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.252][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.256][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.261][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.266][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.267][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.268][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.271][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.272][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.273][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.276][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.280][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.282][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.285][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.290][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.293][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.295][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.296][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.297][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.300][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.301][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.302][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.305][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.310][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.311][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.312][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.314][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.316][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.317][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.321][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.322][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.324][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.325][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.327][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.329][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.330][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.332][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.334][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.335][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.344][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.349][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.350][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.351][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.354][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.358][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.365][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.368][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.373][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.374][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.376][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.378][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.379][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.381][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.383][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.384][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.385][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.388][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.389][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:50.390][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:50.392][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.395][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.396][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.398][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.400][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.401][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.403][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.405][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.406][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.408][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.411][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.413][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.415][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.416][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.417][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.420][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.421][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.425][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.430][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.434][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.436][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.437][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.439][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.440][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.444][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.450][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.454][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.459][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.460][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.461][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.463][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.465][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.466][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.470][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:50.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.613][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.618][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.733][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-01-18 16:03:50.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:50.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:50.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:50.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:50.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:50.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:50.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.843][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:50.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:50.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:50.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.919][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:50.920][private$selectFields]
biodb.TRACE[2025-01-18 16:03:50.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:50.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:50.924][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:50.925][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:50.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:50.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.929][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.930][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.931][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:50.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.935][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.936][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:50.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.940][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.941][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:50.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.943][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.945][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.946][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:50.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.949][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.951][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:50.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.953][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.955][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:50.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:50.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.958][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:50.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:50.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.963][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:50.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.977][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:50.978][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:50.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.981][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.982][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.984][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:50.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.986][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:50.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.991][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.992][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:50.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:50.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:50.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:50.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:50.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.002][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.004][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.007][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.009][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.011][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.012][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.013][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.016][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.017][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.021][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.022][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.023][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.027][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.028][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.032][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.033][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.035][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.036][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.038][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.041][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.043][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.045][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.046][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.050][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.055][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.059][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.061][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.062][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.064][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.069][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.074][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.076][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.079][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.084][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.085][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.087][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.089][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.090][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.092][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.094][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.095][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.097][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.099][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.100][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:51.101][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:51.103][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.106][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.107][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.109][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.111][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.112][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.114][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.117][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.119][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.121][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.127][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.128][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.131][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.132][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.135][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.140][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.143][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.145][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.146][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.147][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.150][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.151][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.155][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.156][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.157][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.160][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.161][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.165][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.170][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.171][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.172][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.175][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.177][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.178][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.180][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.182][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.443][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172629519, (Z)-1-(3-chloro-5-methyl-pyrazin-2-yl)-1-hydroxy-pent-1-en-3-one, (Z)-1-(3-chloro-5-methyl-2-pyrazinyl)-1-hydroxy-1-penten-3-one, (Z)-1-(3-chloro-5-methylpyrazin-2-yl)-1-hydroxypent-1-en-3-one, (Z)-1-(3-chloranyl-5-methyl-pyrazin-2-yl)-1-oxidanyl-pent-1-en-3-one, ...].
biodb.DEBUG[2025-01-18 16:03:51.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:51.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:51.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:51.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:51.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:51.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:51.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.554][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.618][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.628][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:51.629][private$selectFields]
biodb.TRACE[2025-01-18 16:03:51.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-18 16:03:51.632][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-18 16:03:51.633][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-01-18 16:03:51.634][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.638][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.639][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.641][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.643][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.644][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.645][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.648][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.649][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.650][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.654][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.656][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.658][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.659][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.660][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.663][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.664][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.672][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.677][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.678][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.680][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.683][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.687][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.692][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.693][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.697][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.699][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.703][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.704][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.706][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.707][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.709][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.712][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.713][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.716][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.717][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.718][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.721][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.722][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.723][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.727][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.728][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.732][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.733][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.735][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.736][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.738][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.740][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.741][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.743][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.746][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.747][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.750][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.755][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.759][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.761][ef$get] Asked field names are: logp.
biodb.TRACE[2025-01-18 16:03:51.762][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-01-18 16:03:51.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.764][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.766][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.769][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.774][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.779][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.784][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.785][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.786][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.789][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.790][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.791][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.799][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.801][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.802][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-18 16:03:51.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.805][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-01-18 16:03:51.807][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-01-18 16:03:51.808][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.809][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.812][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.813][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.814][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.818][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.819][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.821][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.822][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.824][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.827][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.828][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.831][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.832][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.833][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.835][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.837][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.838][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.840][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.845][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:51.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.850][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:51.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.855][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:51.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:51.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:51.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.865][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.866][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:51.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.869][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.871][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.872][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:51.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.875][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.877][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:51.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.880][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-01-18 16:03:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:51.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-01-18 16:03:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-01-18 16:03:51.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-01-18 16:03:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-01-18 16:03:51.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-01-18 16:03:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-18 16:03:51.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-18 16:03:51.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-18 16:03:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-18 16:03:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-18 16:03:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-18 16:03:52.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:52.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:52.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-18 16:03:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:52.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:52.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:52.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-18 16:03:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:52.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:52.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:52.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-18 16:03:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-18 16:03:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:52.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:52.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:52.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:52.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:52.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:52.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:52.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:52.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:52.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-01-18 16:03:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:52.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:52.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:52.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-01-18 16:03:52.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172621093, 1-isopropyl-3-methyl-piperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-ylpiperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-ylpiperazin-4-ide;rubidium(1+), 3-methyl-1-propan-2-yl-piperazin-4-ide;rubidium(1+), ...].
biodb.DEBUG[2025-01-18 16:03:52.116][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-18 16:03:52.118][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-18 16:03:52.126][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:52.131][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:52.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-18 16:03:52.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:52.139][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-18 16:03:52.141][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2025-01-18 16:03:52.142][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2025-01-18 16:03:52.143][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-18 16:03:52.144][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.146][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.148][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-01-18 16:03:52.154][biodb::testContext]
biodb.INFO [2025-01-18 16:03:52.155][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-18 16:03:52.156][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2025-01-18 16:03:52.157][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-18 16:03:52.158][biodb::testContext]
biodb.INFO [2025-01-18 16:03:52.161][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-18 16:03:52.163][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-01-18 16:03:52.167][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:03:52.168][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-18 16:03:52.170][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-18 16:03:52.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.174][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-18 16:03:52.175][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-18 16:03:52.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.180][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-18 16:03:52.181][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-18 16:03:52.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.186][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-18 16:03:52.187][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-18 16:03:52.188][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-18 16:03:52.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.193][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-18 16:03:52.194][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-18 16:03:52.195][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-18 16:03:52.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.206][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-18 16:03:52.208][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-18 16:03:52.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.212][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-18 16:03:52.213][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-18 16:03:52.215][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-18 16:03:52.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.219][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-18 16:03:52.220][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-18 16:03:52.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.225][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-18 16:03:52.226][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-18 16:03:52.227][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-18 16:03:52.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.232][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-18 16:03:52.233][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-18 16:03:52.234][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-18 16:03:52.235][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-18 16:03:52.236][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-18 16:03:52.238][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-18 16:03:52.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.242][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-18 16:03:52.243][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-18 16:03:52.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.248][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-18 16:03:52.249][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-18 16:03:52.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.253][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-18 16:03:52.255][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-18 16:03:52.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.259][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-18 16:03:52.260][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-18 16:03:52.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.265][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-18 16:03:52.266][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-18 16:03:52.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.270][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-18 16:03:52.272][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-18 16:03:52.282][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-18 16:03:52.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.287][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-18 16:03:52.288][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-18 16:03:52.289][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-18 16:03:52.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.294][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-18 16:03:52.296][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.297][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-18 16:03:52.298][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.300][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:52.301][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.302][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.303][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.304][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.306][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-18 16:03:52.307][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:52.308][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.309][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-18 16:03:52.311][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:52.312][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.313][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.314][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:03:52.314][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:03:52.314][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:03:52.314][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-18 16:03:52.314][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-18 16:03:52.315][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:03:52.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.319][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:52.320][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.321][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.322][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.324][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.325][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:52.326][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:52.327][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.328][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.330][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-18 16:03:52.332][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.333][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-18 16:03:52.335][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.336][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:52.337][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.338][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.340][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.341][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.342][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-18 16:03:52.343][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:52.344][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.346][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-18 16:03:52.347][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:52.348][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.349][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.351][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:03:52.351][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:03:52.351][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:03:52.351][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-18 16:03:52.351][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-18 16:03:52.352][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:03:52.353][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.354][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.356][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:52.357][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.358][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.359][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.360][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.362][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:52.363][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:52.364][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.365][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.367][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-18 16:03:52.369][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.370][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-18 16:03:52.372][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.373][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:52.374][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.375][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.376][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.378][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.379][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-18 16:03:52.380][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:52.382][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.383][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-18 16:03:52.384][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:52.385][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.386][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.388][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.389][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:03:52.390][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.391][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.392][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:52.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.397][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.398][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:52.399][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:52.400][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.402][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.403][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-18 16:03:52.405][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.407][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-18 16:03:52.408][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.409][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:52.410][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.411][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.413][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.414][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.415][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-18 16:03:52.417][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:52.418][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.419][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-18 16:03:52.420][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:52.422][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.423][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.424][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.425][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-18 16:03:52.426][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.429][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:52.430][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.431][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.432][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.434][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.435][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:52.436][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:52.437][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.438][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.440][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:03:52.441][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.537][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-18 16:03:52.539][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-18 16:03:52.540][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-18 16:03:52.542][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-18 16:03:52.544][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-18 16:03:52.546][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-18 16:03:52.547][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-18 16:03:52.549][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-18 16:03:52.551][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-18 16:03:52.552][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-18 16:03:52.554][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-18 16:03:52.556][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-18 16:03:52.557][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-18 16:03:52.559][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-18 16:03:52.561][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-18 16:03:52.562][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-18 16:03:52.564][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-18 16:03:52.566][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-18 16:03:52.568][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-18 16:03:52.569][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-18 16:03:52.571][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-18 16:03:52.573][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-18 16:03:52.574][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-18 16:03:52.576][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-18 16:03:52.578][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-18 16:03:52.580][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-18 16:03:52.581][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-18 16:03:52.583][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-18 16:03:52.585][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-18 16:03:52.586][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-18 16:03:52.588][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-18 16:03:52.590][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-18 16:03:52.591][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-18 16:03:52.593][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-18 16:03:52.595][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-18 16:03:52.596][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-18 16:03:52.598][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-18 16:03:52.600][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-18 16:03:52.602][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-18 16:03:52.603][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-18 16:03:52.605][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-18 16:03:52.613][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-18 16:03:52.615][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-18 16:03:52.616][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-18 16:03:52.618][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-18 16:03:52.620][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-18 16:03:52.622][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-18 16:03:52.623][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-18 16:03:52.625][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-18 16:03:52.627][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-18 16:03:52.628][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-18 16:03:52.630][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-18 16:03:52.632][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-18 16:03:52.633][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-18 16:03:52.635][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-18 16:03:52.637][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-18 16:03:52.639][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-18 16:03:52.640][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-18 16:03:52.642][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-18 16:03:52.644][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-18 16:03:52.645][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-18 16:03:52.647][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-18 16:03:52.649][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-18 16:03:52.650][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-18 16:03:52.652][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-18 16:03:52.654][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-18 16:03:52.655][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-18 16:03:52.657][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-18 16:03:52.659][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-18 16:03:52.660][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-18 16:03:52.662][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-18 16:03:52.664][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-18 16:03:52.665][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-18 16:03:52.667][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-18 16:03:52.669][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-18 16:03:52.670][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-18 16:03:52.672][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-18 16:03:52.674][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-18 16:03:52.675][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-18 16:03:52.677][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-18 16:03:52.679][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-18 16:03:52.681][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-18 16:03:52.682][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-18 16:03:52.684][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-18 16:03:52.686][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-18 16:03:52.687][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-18 16:03:52.688][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.690][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-18 16:03:52.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:52.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:52.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:52.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:52.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:52.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-18 16:03:52.825][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-01-18 16:03:52.827][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-01-18 16:03:52.830][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.831][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-01-18 16:03:52.832][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.833][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:52.835][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.836][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.837][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.838][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.839][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-01-18 16:03:52.841][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:52.842][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.843][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-01-18 16:03:52.844][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:52.846][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-01-18 16:03:52.846][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-01-18 16:03:52.847][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.848][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.850][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-18 16:03:52.851][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.852][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.853][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:52.854][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.857][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.858][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-01-18 16:03:52.858][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-01-18 16:03:52.859][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:52.860][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:52.861][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.863][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.864][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-01-18 16:03:52.867][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.868][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-01-18 16:03:52.869][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.870][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:52.872][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.873][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.874][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.875][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.877][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:03:52.878][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:52.879][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.880][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-01-18 16:03:52.882][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:52.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-01-18 16:03:52.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-01-18 16:03:52.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-01-18 16:03:52.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-01-18 16:03:52.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-01-18 16:03:52.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-01-18 16:03:52.884][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.885][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:03:52.887][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-18 16:03:52.888][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.889][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.890][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:52.891][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.892][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.894][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.895][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:52.895][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:03:52.896][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:52.898][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:52.899][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.900][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.902][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-01-18 16:03:52.904][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.905][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-01-18 16:03:52.907][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.908][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:52.909][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.910][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.911][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.913][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.914][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:03:52.915][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:52.917][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.918][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-01-18 16:03:52.919][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.920][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-01-18 16:03:52.922][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.924][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-18 16:03:52.924][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-18 16:03:52.924][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-18 16:03:52.925][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-01-18 16:03:52.926][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.927][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.928][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:52.930][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.931][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.932][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.933][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:52.933][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:03:52.933][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-01-18 16:03:52.935][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:52.936][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:52.937][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.938][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:03:52.940][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-01-18 16:03:52.942][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.943][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-01-18 16:03:52.945][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.946][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-18 16:03:52.947][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.948][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.950][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.951][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.952][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-18 16:03:52.953][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-18 16:03:52.954][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.956][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-01-18 16:03:52.957][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-18 16:03:52.958][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-01-18 16:03:52.958][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-01-18 16:03:52.959][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-18 16:03:52.961][self$setPropertyValue]
biodb.DEBUG[2025-01-18 16:03:52.962][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-01-18 16:03:52.963][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.964][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.965][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-18 16:03:52.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-18 16:03:52.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-18 16:03:52.969][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-18 16:03:52.970][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:52.970][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-01-18 16:03:52.970][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-01-18 16:03:52.971][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-18 16:03:52.973][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-18 16:03:52.974][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-18 16:03:52.975][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:03:52.977][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-01-18 16:03:52.978][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-18 16:03:52.980][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-18 16:03:52.982][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-01-18 16:03:52.984][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-18 16:03:52.986][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-01-18 16:03:52.992][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2025-01-18 16:03:52.994][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2025-01-18 16:03:52.995][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2025-01-18 16:03:52.997][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-01-18 16:03:52.998][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-01-18 16:03:53.000][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-01-18 16:03:53.001][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-01-18 16:03:53.003][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-01-18 16:03:53.004][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-01-18 16:03:53.006][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-01-18 16:03:53.019][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2025-01-18 16:03:53.024][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.026][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-01-18 16:03:53.027][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:53.028][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:53.031][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2025-01-18 16:03:53.033][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:53.036][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-01-18 16:03:53.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:53.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:53.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:53.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:53.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:53.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:53.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:53.053][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.054][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.057][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.067][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:53.122][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2025-01-18 16:03:53.125][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:53.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:53.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.250][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.253][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.286][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.288][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.304][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.308][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.318][ef$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:53.328][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.330][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-18 16:03:53.331][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:53.332][biodb::testThat]
biodb.DEBUG[2025-01-18 16:03:53.335][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2025-01-18 16:03:53.337][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-18 16:03:53.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.INFO [2025-01-18 16:03:53.341][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75" for "ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75".
biodb.TRACE[2025-01-18 16:03:53.343][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-18 16:03:53.344][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-18 16:03:53.346][conn$getEntryContent] 0 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2025-01-18 16:03:53.347][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Substance database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-01-18 16:03:53.348][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-18 16:03:53.349][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-01-18 16:03:53.351][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-01-18 16:03:53.353][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML".
biodb.DEBUG[2025-01-18 16:03:53.356][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-18 16:03:53.357][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-18 16:03:53.359][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML".
biodb.TRACE[2025-01-18 16:03:53.443][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/substance/sid/3/XML).
biodb.TRACE[2025-01-18 16:03:53.542][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml"
biodb.DEBUG[2025-01-18 16:03:53.544][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-18 16:03:53.546][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-01-18 16:03:53.548][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-01-18 16:03:53.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-18 16:03:53.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:53.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:53.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:53.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:53.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:53.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-18 16:03:53.565][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.569][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.579][ef$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-01-18 16:03:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-01-18 16:03:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-18 16:03:53.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-18 16:03:53.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-18 16:03:53.648][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2025-01-18 16:03:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-18 16:03:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-18 16:03:53.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:03:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-18 16:03:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:03:53.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-18 16:03:53.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:53.674][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.675][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-18 16:03:53.676][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:53.677][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.685][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.687][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-01-18 16:03:53.688][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:53.689][biodb::testThat]
biodb.WARN [2025-01-18 16:03:53.693][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-01-18 16:03:53.698][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-01-18 16:03:53.710][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.711][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-01-18 16:03:53.712][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:53.713][biodb::testThat]
biodb.TRACE[2025-01-18 16:03:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.731][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:53.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.746][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:53.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-01-18 16:03:53.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-01-18 16:03:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-18 16:03:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-18 16:03:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-18 16:03:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:53.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-18 16:03:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-18 16:03:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-18 16:03:53.805][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.807][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-18 16:03:53.808][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:53.809][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.819][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.820][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-18 16:03:53.821][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:53.822][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.833][biodb::testThat]
biodb.INFO [2025-01-18 16:03:53.834][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-18 16:03:53.836][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:53.837][biodb::testThat]
biodb.DEBUG[2025-01-18 16:03:53.842][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2025-01-18 16:03:53.919][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2025-01-18 16:03:54.011][biodb::testThat]
biodb.INFO [2025-01-18 16:03:54.012][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-18 16:03:54.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-18 16:03:54.014][biodb::testThat]
biodb.DEBUG[2025-01-18 16:03:54.075][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2025-01-18 16:03:54.140][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-18 16:03:54.141][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2025-01-18 16:03:54.143][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2025-01-18 16:03:54.144][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-18 16:03:54.145][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-18 16:03:54.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-18 16:03:54.147][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-18 16:03:54.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-18 16:03:54.149][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-18 16:03:54.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1035 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1035 ]
> 
> proc.time()
   user  system elapsed 
 58.351   2.487  98.680

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)