Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-25 17:42 -0400 (Tue, 25 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4760 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4494 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4508 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1940/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
seqArchRplus 1.4.0 (landing page) Sarvesh Nikumbh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the seqArchRplus package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqArchRplus.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: seqArchRplus |
Version: 1.4.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:seqArchRplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings seqArchRplus_1.4.0.tar.gz |
StartedAt: 2024-06-24 11:39:29 -0400 (Mon, 24 Jun 2024) |
EndedAt: 2024-06-24 11:51:45 -0400 (Mon, 24 Jun 2024) |
EllapsedTime: 736.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: seqArchRplus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:seqArchRplus.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings seqArchRplus_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/seqArchRplus.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.4 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘seqArchRplus/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘seqArchRplus’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘seqArchRplus’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed per_cluster_go_term_enrichments 86.247 3.903 109.354 generate_all_plots 77.688 3.581 102.615 per_cluster_annotations 20.953 0.293 24.948 curate_clusters 18.089 0.522 23.597 plot_motif_heatmaps2 11.397 0.425 14.301 per_cluster_seqlogos 4.385 0.058 5.466 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
seqArchRplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqArchRplus ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘seqArchRplus’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seqArchRplus)
seqArchRplus.Rcheck/seqArchRplus-Ex.timings
name | user | system | elapsed | |
curate_clusters | 18.089 | 0.522 | 23.597 | |
generate_all_plots | 77.688 | 3.581 | 102.615 | |
generate_html_report | 0.020 | 0.004 | 0.028 | |
handle_tc_from_cage | 1.601 | 0.364 | 2.669 | |
iqw_tpm_plots | 1.319 | 0.036 | 1.710 | |
order_clusters_iqw | 0.034 | 0.003 | 0.052 | |
per_cluster_annotations | 20.953 | 0.293 | 24.948 | |
per_cluster_go_term_enrichments | 86.247 | 3.903 | 109.354 | |
per_cluster_seqlogos | 4.385 | 0.058 | 5.466 | |
per_cluster_strand_dist | 2.099 | 0.022 | 2.501 | |
plot_motif_heatmaps | 3.757 | 0.172 | 4.555 | |
plot_motif_heatmaps2 | 11.397 | 0.425 | 14.301 | |
seqs_acgt_image | 0.496 | 0.021 | 0.616 | |
write_seqArchR_cluster_track_bed | 0.089 | 0.010 | 0.119 | |