Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2025-01-23 12:12 -0500 (Thu, 23 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4746
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4493
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4517
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4469
taishanLinux (openEuler 24.03 LTS)aarch644.4.2 (2024-10-31) -- "Pile of Leaves" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1296/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mobileRNA 1.2.0  (landing page)
Katie Jeynes-Cupper
Snapshot Date: 2025-01-20 13:00 -0500 (Mon, 20 Jan 2025)
git_url: https://git.bioconductor.org/packages/mobileRNA
git_branch: RELEASE_3_20
git_last_commit: 1d6872e
git_last_commit_date: 2024-10-29 11:27:50 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for mobileRNA on taishan

To the developers/maintainers of the mobileRNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: mobileRNA
Version: 1.2.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mobileRNA_1.2.0.tar.gz
StartedAt: 2025-01-21 08:52:38 -0000 (Tue, 21 Jan 2025)
EndedAt: 2025-01-21 08:58:42 -0000 (Tue, 21 Jan 2025)
EllapsedTime: 364.4 seconds
RetCode: 0
Status:   OK  
CheckDir: mobileRNA.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mobileRNA_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/mobileRNA.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 12.3.1 (openEuler 12.3.1-36.oe2403)
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
RNAdicercall            16.981  1.428  18.462
RNAdistribution         17.346  0.255  17.648
RNAsubset               15.944  0.132  16.115
RNAdifferentialAnalysis  9.539  0.713  10.277
RNAsummary               6.791  0.088   6.896
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mobileRNA.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL mobileRNA
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4.2/site-library’
* installing *source* package ‘mobileRNA’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mobileRNA)

Tests output


Example timings

mobileRNA.Rcheck/mobileRNA-Ex.timings

nameusersystemelapsed
RNAattributes1.3490.0161.369
RNAdf2se0.2890.0040.294
RNAdicercall16.981 1.42818.462
RNAdifferentialAnalysis 9.539 0.71310.277
RNAdistribution17.346 0.25517.648
RNAfeatures1.6690.0551.729
RNAimport0.0010.0000.000
RNAmergeAnnotations0.3910.0000.393
RNAmergeGenomes0.0650.0040.071
RNAmobile0.9470.0120.961
RNApopulation3.1720.0243.203
RNAreorder0.1690.0040.173
RNAsequences2.0590.0162.080
RNAsubset15.944 0.13216.115
RNAsummary6.7910.0886.896
mRNA_data0.0390.0000.039
mapRNA0.0000.0000.001
plotHeatmap0.9600.0391.001
plotRNAfeatures1.4040.0121.420
plotSampleDistance3.5820.1043.694
plotSamplePCA3.4270.0243.459
sRNA_data0.1490.0000.149