Till Soerensen
| Snapshot Date: 2025-01-02 13:00 -0500 (Thu, 02 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_20 |
| git_last_commit: c4a056b |
| git_last_commit_date: 2024-10-29 09:59:09 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-09 12:11 -0500 (Thu, 09 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4358 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1021/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.38.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.38.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-01-08 22:04:44 -0000 (Wed, 08 Jan 2025) |
| EndedAt: 2025-01-08 22:08:05 -0000 (Wed, 08 Jan 2025) |
| EllapsedTime: 201.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (16), ICL=134<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (16), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 1(N=76) has 2 sub-cluster at 2 (6), ICL=96<>30
split 1 into 2 clusters
cluster 2(N=227) has 2 sub-cluster at 2 (11), ICL=40<>30
split 2 into 2 clusters
cluster 1(N=76) has 2 sub-cluster at 2 (6), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 9 iterations
cluster 1(N=133) has 2 sub-cluster at 2 (7), ICL=96<>34
split 1 into 2 clusters
cluster 4(N=8) has 2 sub-cluster at 2 (57), ICL=47<>34
split 4 into 2 clusters
cluster 2(N=65) has 2 sub-cluster at 2 (5), ICL=9.2<>34
cluster 3(N=400) has 4 sub-cluster at 5 (20), ICL=1.7<>34
cluster 1(N=133) has 2 sub-cluster at 2 (7), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 5 takes 0.017 mins, 24 iterations
cluster 4(N=844) has 2 sub-cluster at 2 (5), ICL=75<>37
split 4 into 2 clusters
cluster 2(N=119) has 5 sub-cluster at 5 (24), ICL=17<>37
cluster 5(N=78) has 6 sub-cluster at 6 (16), ICL=13<>37
cluster 3(N=113) has 4 sub-cluster at 4 (25), ICL=8.9<>37
cluster 1(N=61) has 2 sub-cluster at 2 (13), ICL=5.6<>37
cluster 1(N=61) has 2 sub-cluster at 2 (13), ICL=0<>37
Model Refinement takes 0.067 mins(max 2: 0.017)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 6 iterations
cluster 5(N=52) has 3 sub-cluster at 3 (29), ICL=65<>41
split 5 into 3 clusters
cluster 3(N=259) has 2 sub-cluster at 2 (9), ICL=44<>41
split 3 into 2 clusters
cluster 1(N=94) has 3 sub-cluster at 3 (6), ICL=24<>41
cluster 2(N=292) has 2 sub-cluster at 2 (16), ICL=24<>41
cluster 6(N=134) has 2 sub-cluster at 2 (15), ICL=16<>41
cluster 1(N=94) has 3 sub-cluster at 3 (6), ICL=0<>41
Model Refinement takes 0.15 mins(max 4: 0.05)
Fit Model 5 of (6/10) K=6->9 N=4841
EM 8 takes 0 mins, 11 iterations
cluster 6(N=85) has 2 sub-cluster at 2 (16), ICL=37<>45
cluster 8(N=276) has 3 sub-cluster at 3 (9), ICL=30<>45
cluster 7(N=49) has 2 sub-cluster at 2 (100), ICL=30<>45
cluster 1(N=185) has 2 sub-cluster at 2 (16), ICL=22<>45
cluster 4(N=31) has 2 sub-cluster at 2 (14), ICL=18<>45
cluster 2(N=560) has 2 sub-cluster at 2 (6), ICL=15<>45
cluster 3(N=432) has 7 sub-cluster at 7 (17), ICL=7.7<>45
cluster 1(N=185) has 2 sub-cluster at 2 (16), ICL=0<>45
Model Refinement takes 0.17 mins(max 5: 0.067)
Fit Model 6 of (6/10) K=8->8 N=9682
EM 8 takes 0 mins, 8 iterations
cluster 5(N=6477) has 3 sub-cluster at 3 (7), ICL=105<>48
split 5 into 3 clusters
cluster 8(N=557) has 3 sub-cluster at 3 (8), ICL=63<>48
split 8 into 3 clusters
cluster 6(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 1(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 2(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 4(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 3(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 7(N=76) has 3 sub-cluster at 4 (12), ICL=4.8<>48
cluster 1(N=392) has 3 sub-cluster at 3 (34), ICL=0<>48
Model Refinement takes 0.22 mins(max 5: 0.067)
Fit Model 7 of (6/10) K=8->12 N=9682
EM 12 takes 0 mins, 8 iterations
cluster 8(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 2(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 4(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 3(N=898) has 3 sub-cluster at 3 (9), ICL=29<>48
cluster 12(N=89) has 2 sub-cluster at 2 (13), ICL=18<>48
cluster 10(N=364) has 2 sub-cluster at 2 (6), ICL=12<>48
cluster 11(N=180) has 4 sub-cluster at 4 (37), ICL=7.5<>48
cluster 9(N=75) has 3 sub-cluster at 4 (13), ICL=3.9<>48
cluster 7(N=307) has 2 sub-cluster at 2 (6), ICL=2.9<>48
cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.32 mins(max 5: 0.067)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=181<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 9 iterations
cluster 2(N=93) has 3 sub-cluster at 3 (5), ICL=106<>25
split 2 into 3 clusters
cluster 1(N=212) has 2 sub-cluster at 2 (5), ICL=33<>25
split 1 into 2 clusters
cluster 1(N=212) has 2 sub-cluster at 2 (5), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 14 iterations
cluster 3(N=62) has 3 sub-cluster at 3 (8), ICL=38<>28
split 3 into 3 clusters
cluster 5(N=59) has 2 sub-cluster at 2 (13), ICL=19<>28
cluster 4(N=65) has 2 sub-cluster at 2 (9), ICL=13<>28
cluster 2(N=13) has 2 sub-cluster at 2 (100), ICL=11<>28
cluster 1(N=406) has 8 sub-cluster at 8 (22), ICL=8.4<>28
cluster 1(N=406) has 8 sub-cluster at 8 (22), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=5->7 N=1210
EM 7 takes 0 mins, 16 iterations
cluster 4(N=26) has 2 sub-cluster at 2 (100), ICL=43<>31
split 4 into 2 clusters
cluster 6(N=144) has 3 sub-cluster at 3 (12), ICL=41<>31
split 6 into 3 clusters
cluster 5(N=54) has 6 sub-cluster at 6 (9), ICL=21<>31
cluster 3(N=63) has 2 sub-cluster at 2 (16), ICL=21<>31
cluster 2(N=26) has 2 sub-cluster at 2 (5), ICL=16<>31
cluster 1(N=762) has 3 sub-cluster at 3 (6), ICL=15<>31
cluster 7(N=145) has 8 sub-cluster at 8 (25), ICL=12<>31
cluster 1(N=762) has 3 sub-cluster at 3 (6), ICL=0<>31
Model Refinement takes 0.083 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=7->10 N=2420
EM 9 takes 0 mins, 8 iterations
cluster 2(N=62) has 2 sub-cluster at 2 (7), ICL=38<>34
split 2 into 2 clusters
cluster 8(N=21) has 2 sub-cluster at 2 (10), ICL=24<>34
cluster 5(N=98) has 6 sub-cluster at 6 (25), ICL=24<>34
cluster 9(N=279) has 2 sub-cluster at 2 (9), ICL=20<>34
cluster 4(N=44) has 3 sub-cluster at 3 (14), ICL=19<>34
cluster 3(N=93) has 4 sub-cluster at 4 (9), ICL=17<>34
cluster 7(N=117) has 3 sub-cluster at 4 (13), ICL=14<>34
cluster 6(N=100) has 6 sub-cluster at 7 (14), ICL=8.8<>34
cluster 1(N=1627) has 4 sub-cluster at 4 (9), ICL=5.7<>34
cluster 1(N=1627) has 4 sub-cluster at 4 (9), ICL=0<>34
Model Refinement takes 0.15 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=9->10 N=4841
EM 10 takes 0 mins, 8 iterations
cluster 1(N=3246) has 3 sub-cluster at 3 (8), ICL=30<>37
cluster 10(N=571) has 2 sub-cluster at 2 (6), ICL=27<>37
cluster 6(N=192) has 2 sub-cluster at 2 (11), ICL=26<>37
cluster 2(N=85) has 2 sub-cluster at 2 (7), ICL=23<>37
cluster 5(N=116) has 7 sub-cluster at 8 (35), ICL=19<>37
cluster 4(N=177) has 3 sub-cluster at 3 (8), ICL=19<>37
cluster 3(N=45) has 2 sub-cluster at 3 (32), ICL=16<>37
cluster 8(N=267) has 8 sub-cluster at 8 (29), ICL=13<>37
cluster 7(N=198) has 8 sub-cluster at 8 (37), ICL=9.8<>37
cluster 1(N=3246) has 3 sub-cluster at 3 (8), ICL=0<>37
Model Refinement takes 0.2 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=10->10 N=9682
EM 10 takes 0.017 mins, 5 iterations
cluster 1(N=6467) has 3 sub-cluster at 3 (8), ICL=74<>40
split 1 into 3 clusters
cluster 2(N=159) has 4 sub-cluster at 4 (16), ICL=45<>40
split 2 into 4 clusters
cluster 10(N=1121) has 2 sub-cluster at 2 (6), ICL=40<>40
split 10 into 2 clusters
cluster 6(N=391) has 2 sub-cluster at 2 (8), ICL=40<>40
cluster 4(N=397) has 2 sub-cluster at 2 (10), ICL=39<>40
cluster 5(N=239) has 2 sub-cluster at 2 (11), ICL=27<>40
cluster 7(N=404) has 2 sub-cluster at 2 (21), ICL=15<>40
cluster 3(N=75) has 3 sub-cluster at 4 (11), ICL=7.5<>40
cluster 1(N=6467) has 3 sub-cluster at 3 (8), ICL=0<>40
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=10->16 N=9682
EM 16 takes 0.033 mins, 14 iterations
cluster 7(N=17) has 2 sub-cluster at 2 (16), ICL=62<>40
split 7 into 2 clusters
cluster 11(N=390) has 3 sub-cluster at 3 (34), ICL=41<>40
split 11 into 3 clusters
cluster 9(N=413) has 2 sub-cluster at 2 (12), ICL=40<>40
split 9 into 2 clusters
cluster 14(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 12(N=403) has 2 sub-cluster at 2 (14), ICL=25<>40
cluster 6(N=33) has 2 sub-cluster at 2 (10), ICL=24<>40
cluster 10(N=240) has 2 sub-cluster at 2 (15), ICL=24<>40
cluster 4(N=90) has 5 sub-cluster at 5 (60), ICL=20<>40
cluster 8(N=75) has 3 sub-cluster at 4 (46), ICL=16<>40
cluster 5(N=22) has 2 sub-cluster at 2 (7), ICL=13<>40
cluster 3(N=314) has 2 sub-cluster at 2 (10), ICL=6.2<>40
cluster 3(N=314) has 2 sub-cluster at 2 (10), ICL=0<>40
Model Refinement takes 0.35 mins(max 2: 0.067)
Fit Model 8 of (6/10) K=16->20 N=9682
EM 19 takes 0.033 mins, 12 iterations
cluster 15(N=397) has 2 sub-cluster at 2 (28), ICL=25<>40
cluster 6(N=36) has 3 sub-cluster at 3 (19), ICL=23<>40
cluster 4(N=95) has 5 sub-cluster at 5 (45), ICL=20<>40
cluster 10(N=86) has 2 sub-cluster at 2 (6), ICL=20<>40
cluster 11(N=184) has 6 sub-cluster at 7 (61), ICL=16<>40
cluster 9(N=365) has 8 sub-cluster at 8 (22), ICL=16<>40
cluster 14(N=113) has 3 sub-cluster at 3 (21), ICL=16<>40
cluster 13(N=145) has 7 sub-cluster at 8 (75), ICL=14<>40
cluster 5(N=21) has 2 sub-cluster at 2 (8), ICL=14<>40
cluster 3(N=310) has 5 sub-cluster at 5 (60), ICL=11<>40
cluster 12(N=219) has 2 sub-cluster at 2 (6), ICL=9.3<>40
cluster 7(N=11) has 2 sub-cluster at 2 (100), ICL=3.5<>40
cluster 8(N=74) has 2 sub-cluster at 3 (13), ICL=1.8<>40
cluster 3(N=310) has 5 sub-cluster at 5 (60), ICL=0<>40
Model Refinement takes 0.37 mins(max 2: 0.067)
Fit Model 9 of (6/10) K=19->19 N=9682
EM 19 takes 0.017 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted