Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-01-09 12:11 -0500 (Thu, 09 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4358 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 763/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
gaga 2.52.0 (landing page) David Rossell
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the gaga package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gaga.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: gaga |
Version: 2.52.0 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL gaga |
StartedAt: 2025-01-08 19:58:46 -0000 (Wed, 08 Jan 2025) |
EndedAt: 2025-01-08 19:59:02 -0000 (Wed, 08 Jan 2025) |
EllapsedTime: 16.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL gaga ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.2/site-library’ * installing *source* package ‘gaga’ ... ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c cseqdesma.c -o cseqdesma.o /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c cstat.c -o cstat.o cstat.c: In function ‘free_vector’: cstat.c:667:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 4)’ must not be NULL [-Waddress] 667 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function ‘free_dvector’: cstat.c:673:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 8)’ must not be NULL [-Waddress] 673 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function ‘free_ivector’: cstat.c:679:20: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘v + (sizetype)((long unsigned int)nl * 4)’ must not be NULL [-Waddress] 679 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function ‘free_dmatrix’: cstat.c:687:47: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 8)’ must not be NULL [-Waddress] 687 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL ) | ^~ cstat.c:689:21: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘m + (sizetype)((long unsigned int)nrl * 8)’ must not be NULL [-Waddress] 689 | if( (m+nrl) != NULL ) free((char *) (m+nrl)); | ^~ cstat.c: In function ‘free_imatrix’: cstat.c:697:47: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 4)’ must not be NULL [-Waddress] 697 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL ) | ^~ cstat.c:699:21: warning: the comparison will always evaluate as ‘true’ for the pointer operand in ‘m + (sizetype)((long unsigned int)nrl * 8)’ must not be NULL [-Waddress] 699 | if( (m+nrl) != NULL ) free((char *) (m+nrl)); | ^~ cstat.c: At top level: cstat.c:22:19: warning: ‘css_c_sccs_id’ defined but not used [-Wunused-const-variable=] 22 | static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; | ^~~~~~~~~~~~~ cstat.c:21:19: warning: ‘vector_c_sccs_id’ defined but not used [-Wunused-const-variable=] 21 | static const char vector_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~ cstat.c:20:19: warning: ‘nrutil_c_sccs_id’ defined but not used [-Wunused-const-variable=] 20 | static const char nrutil_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~ cstat.c:19:19: warning: ‘mess_c_sccs_id’ defined but not used [-Wunused-const-variable=] 19 | static const char mess_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~ cstat.c:18:19: warning: ‘interface_c_sccs_id’ defined but not used [-Wunused-const-variable=] 18 | static const char interface_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~~~~ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-4.4.2/site-library/00LOCK-gaga/00new/gaga/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gaga)