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This page was generated on 2025-01-09 12:11 -0500 (Thu, 09 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
kjohnson1macOS 13.6.6 Venturaarm644.4.2 (2024-10-31) -- "Pile of Leaves" 4467
taishanLinux (openEuler 24.03 LTS)aarch644.4.2 (2024-10-31) -- "Pile of Leaves" 4358
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 357/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cisPath 1.46.0  (landing page)
Likun Wang
Snapshot Date: 2025-01-02 13:00 -0500 (Thu, 02 Jan 2025)
git_url: https://git.bioconductor.org/packages/cisPath
git_branch: RELEASE_3_20
git_last_commit: a42bdef
git_last_commit_date: 2024-10-29 09:44:40 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped


BUILD results for cisPath on taishan

To the developers/maintainers of the cisPath package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cisPath.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: cisPath
Version: 1.46.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cisPath
StartedAt: 2025-01-08 21:27:12 -0000 (Wed, 08 Jan 2025)
EndedAt: 2025-01-08 21:27:26 -0000 (Wed, 08 Jan 2025)
EllapsedTime: 14.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cisPath
###
##############################################################################
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* checking for file ‘cisPath/DESCRIPTION’ ... OK
* preparing ‘cisPath’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘cisPath’ ...
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c cisPath.cpp -o cisPath.o
cisPath.cpp: In function ‘bool processWebInput(const char*, bool, bool)’:
cisPath.cpp:3555:27: error: format not a string literal and no format arguments [-Werror=format-security]
 3555 |             PRINTFUNCTION(buffer);
      |                           ^~~~~~
cc1plus: some warnings being treated as errors
make: *** [/home/biocbuild/R/R/etc/Makeconf:204: cisPath.o] Error 1
ERROR: compilation failed for package ‘cisPath’
* removing ‘/home/biocbuild/tmp/RtmpWrWLa8/Rinst2e7435233c8815/cisPath’
      -----------------------------------
ERROR: package installation failed