| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-02-23 11:57 -0500 (Mon, 23 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4890 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 159/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| beadarray 2.60.0 (landing page) Mark Dunning
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for beadarray in R Universe. | ||||||||||||||
|
To the developers/maintainers of the beadarray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beadarray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: beadarray |
| Version: 2.60.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 beadarray |
| StartedAt: 2026-02-22 16:29:42 -0500 (Sun, 22 Feb 2026) |
| EndedAt: 2026-02-22 16:32:05 -0500 (Sun, 22 Feb 2026) |
| EllapsedTime: 143.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 beadarray
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* checking for file ‘beadarray/DESCRIPTION’ ... OK
* preparing ‘beadarray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ImageProcessing.Rmd’ using rmarkdown
--- finished re-building ‘ImageProcessing.Rmd’
--- re-building ‘beadarray.Rmd’ using rmarkdown
--- finished re-building ‘beadarray.Rmd’
--- re-building ‘beadlevel.Rmd’ using rmarkdown
--- finished re-building ‘beadlevel.Rmd’
--- re-building ‘beadsummary.Rmd’ using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33126/matrix/GSE33126_series_matrix.txt.gz'
Content type 'application/x-gzip' length 3658664 bytes (3.5 MB)
downloaded 7649 bytes
Quitting from beadsummary.Rmd:426-434 [unnamed-chunk-32]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! download from 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33126/matrix/GSE33126_series_matrix.txt.gz' failed
---
Backtrace:
▆
1. └─utils::download.file(paste(url, filenm, sep = ""), destfile = filenm)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'beadsummary.Rmd' failed with diagnostics:
download from 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33126/matrix/GSE33126_series_matrix.txt.gz' failed
--- failed re-building ‘beadsummary.Rmd’
SUMMARY: processing the following file failed:
‘beadsummary.Rmd’
Error: Vignette re-building failed.
Execution halted