Bo Yao
| Snapshot Date: 2025-01-02 13:00 -0500 (Thu, 02 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/MBCB |
| git_branch: RELEASE_3_20 |
| git_last_commit: b421e4a |
| git_last_commit_date: 2024-10-29 09:34:23 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-01-09 12:11 -0500 (Thu, 09 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4358 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1169/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MBCB 1.60.0 (landing page) Bo Yao
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the MBCB package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MBCB.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: MBCB |
| Version: 1.60.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MBCB |
| StartedAt: 2025-01-08 22:11:57 -0000 (Wed, 08 Jan 2025) |
| EndedAt: 2025-01-08 22:12:02 -0000 (Wed, 08 Jan 2025) |
| EllapsedTime: 5.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MBCB ### ############################################################################## ############################################################################## * checking for file ‘MBCB/DESCRIPTION’ ... OK * preparing ‘MBCB’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MBCB.Rnw’ using Sweave Loading required package: tcltk Warning: no DISPLAY variable so Tk is not available Loading required package: tcltk2 Read 5 items 1 / 4 complete. 2 / 4 complete. 3 / 4 complete. 4 / 4 complete. 1 / 4 complete. 2 / 4 complete. 3 / 4 complete. 4 / 4 complete. 1 / 4 complete. 2 / 4 complete. 3 / 4 complete. 4 / 4 complete. 1 / 4 complete. 2 / 4 complete. 3 / 4 complete. 4 / 4 complete. 1 / 4 complete. 2 / 4 complete. 3 / 4 complete. 4 / 4 complete. Error: processing vignette 'MBCB.Rnw' failed with diagnostics: chunk 11 (label = open GUI) Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") : [tcl] invalid command name "toplevel". --- failed re-building ‘MBCB.Rnw’ SUMMARY: processing the following file failed: ‘MBCB.Rnw’ Error: Vignette re-building failed. Execution halted