Multiple platform build/check report for BioC 3.20 - BUILD results for MANOR on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4744
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4487
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4515
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4467
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4358
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MANOR on taishan

To the developers/maintainers of the MANOR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MANOR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: MANOR

Version: 1.78.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MANOR

StartedAt: 2025-01-08 22:10:56 -0000 (Wed, 08 Jan 2025)

EndedAt: 2025-01-08 22:10:58 -0000 (Wed, 08 Jan 2025)

EllapsedTime: 2.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MANOR
###
##############################################################################
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* checking for file ‘MANOR/DESCRIPTION’ ... OK
* preparing ‘MANOR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘MANOR’ ...
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c Rnem_arg.c -o Rnem_arg.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c Rnem_exe.c -o Rnem_exe.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c exememo.c -o exememo.o
exememo.c: In function ‘GenAlloc’:
exememo.c:43:7: error: format not a string literal and no format arguments [-Werror=format-security]
   43 |       error(msg);
      |       ^~~~~
exememo.c:40:5: warning: ‘msg’ may be used uninitialized [-Wmaybe-uninitialized]
   40 |     sprintf(msg, "Fatal: in %s, no memory for %s (%ld elements size %ld)\n",
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   41 |             where, what, nelem, elsize);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~
exememo.c:39:11: note: ‘msg’ was declared here
   39 |     char* msg;
      |           ^~~
cc1: some warnings being treated as errors
make: *** [/home/biocbuild/R/R/etc/Makeconf:195: exememo.o] Error 1
ERROR: compilation failed for package ‘MANOR’
* removing ‘/home/biocbuild/tmp/RtmpK4M951/Rinst31d41e4753c36e/MANOR’
      -----------------------------------
ERROR: package installation failed