Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-01-09 12:11 -0500 (Thu, 09 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4744 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4515 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4467 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4358 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 805/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GeneSelectMMD 2.50.0 (landing page) Weiliang Qiu
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the GeneSelectMMD package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneSelectMMD.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: GeneSelectMMD |
Version: 2.50.0 |
Command: /home/biocbuild/R/R/bin/R CMD INSTALL GeneSelectMMD |
StartedAt: 2025-01-08 19:56:50 -0000 (Wed, 08 Jan 2025) |
EndedAt: 2025-01-08 19:57:00 -0000 (Wed, 08 Jan 2025) |
EllapsedTime: 9.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL GeneSelectMMD ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.2/site-library’ * installing *source* package ‘GeneSelectMMD’ ... ** using staged installation ** libs using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’ using Fortran compiler: ‘GNU Fortran (GCC) 12.3.1 (openEuler 12.3.1-36.oe2403)’ /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o gfortran -fPIC -g -O2 -Wall -Werror=format-security -c Qfunc.f -o Qfunc.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran gfortran -fPIC -g -O2 -Wall -Werror=format-security -c blas.f -o blas.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c isnan.c -o isnan.o gfortran -fPIC -g -O2 -Wall -Werror=format-security -c lbfgsb.f -o lbfgsb.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran lbfgsb.f:1409:25: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ Warning: ‘tu’ may be used uninitialized [-Wmaybe-uninitialized] lbfgsb.f:1482:72: 1482 | t(nbreak) = tl/(-neggi) | ^ Warning: ‘tl’ may be used uninitialized [-Wmaybe-uninitialized] lbfgsb.f:1409:28: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ note: ‘tl’ was declared here gfortran -fPIC -g -O2 -Wall -Werror=format-security -c lbfgsbDriver.f -o lbfgsbDriver.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran lbfgsbDriver.f:243:71: 243 | + wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax) | 1 Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] gfortran -fPIC -g -O2 -Wall -Werror=format-security -c linpack.f -o linpack.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran gfortran -fPIC -g -O2 -Wall -Werror=format-security -c llkhFun.f -o llkhFun.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran gfortran -fPIC -g -O2 -Wall -Werror=format-security -c myTtest.f -o myTtest.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran gfortran -fPIC -g -O2 -Wall -Werror=format-security -c paraEstLoop.f -o paraEstLoop.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c pt.c -o pt.o gfortran -fPIC -g -O2 -Wall -Werror=format-security -c timer.f -o timer.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran gfortran -fPIC -g -O2 -Wall -Werror=format-security -c wiFun.f -o wiFun.o f951: Warning: ‘-Werror=’ argument ‘-Werror=format-security’ is not valid for Fortran /opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/usr/lib/gcc/aarch64-openEuler-linux/12 -lgfortran -lm -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-4.4.2/site-library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GeneSelectMMD)