Back to Build/check report for BioC 3.21 experimental data |
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This page was generated on 2024-11-28 15:01 -0500 (Thu, 28 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 282/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
optimalFlowData 1.19.0 (landing page) Hristo Inouzhe
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
To the developers/maintainers of the optimalFlowData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: optimalFlowData |
Version: 1.19.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings optimalFlowData_1.19.0.tar.gz |
StartedAt: 2024-11-28 13:27:25 -0500 (Thu, 28 Nov 2024) |
EndedAt: 2024-11-28 13:32:06 -0500 (Thu, 28 Nov 2024) |
EllapsedTime: 280.5 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: optimalFlowData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings optimalFlowData_1.19.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/optimalFlowData.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘optimalFlowData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘optimalFlowData’ version ‘1.19.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘optimalFlowData’ can be installed ... OK * checking installed package size ... INFO installed size is 97.4Mb sub-directories of 1Mb or more: data 97.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... WARNING LazyData DB of 97.2 MB without LazyDataCompression set See §1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/home/biocbuild/bbs-3.21-data-experiment/meat/optimalFlowData.Rcheck/00check.log’ for details.
optimalFlowData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL optimalFlowData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘optimalFlowData’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (optimalFlowData)
optimalFlowData.Rcheck/optimalFlowData-Ex.timings
name | user | system | elapsed | |
Cytometry1 | 0.022 | 0.014 | 0.035 | |
Cytometry10 | 0.015 | 0.008 | 0.023 | |
Cytometry11 | 0.018 | 0.007 | 0.024 | |
Cytometry12 | 0.016 | 0.008 | 0.024 | |
Cytometry13 | 0.016 | 0.008 | 0.024 | |
Cytometry14 | 0.023 | 0.009 | 0.032 | |
Cytometry15 | 0.011 | 0.002 | 0.014 | |
Cytometry16 | 0.011 | 0.003 | 0.013 | |
Cytometry17 | 0.037 | 0.018 | 0.054 | |
Cytometry18 | 0.031 | 0.016 | 0.047 | |
Cytometry19 | 0.019 | 0.002 | 0.021 | |
Cytometry2 | 0.046 | 0.006 | 0.052 | |
Cytometry20 | 0.032 | 0.001 | 0.033 | |
Cytometry21 | 0.043 | 0.002 | 0.045 | |
Cytometry22 | 0.019 | 0.002 | 0.021 | |
Cytometry23 | 0.021 | 0.006 | 0.027 | |
Cytometry24 | 0.014 | 0.012 | 0.026 | |
Cytometry25 | 0.017 | 0.009 | 0.025 | |
Cytometry26 | 0.019 | 0.003 | 0.022 | |
Cytometry27 | 0.050 | 0.011 | 0.061 | |
Cytometry28 | 0.077 | 0.018 | 0.095 | |
Cytometry29 | 0.044 | 0.014 | 0.058 | |
Cytometry3 | 0.010 | 0.001 | 0.010 | |
Cytometry30 | 0.039 | 0.001 | 0.040 | |
Cytometry31 | 0.036 | 0.007 | 0.043 | |
Cytometry32 | 0.040 | 0.002 | 0.043 | |
Cytometry33 | 0.049 | 0.002 | 0.051 | |
Cytometry34 | 0.049 | 0.004 | 0.053 | |
Cytometry35 | 0.035 | 0.002 | 0.038 | |
Cytometry36 | 0.008 | 0.003 | 0.011 | |
Cytometry37 | 0.010 | 0.001 | 0.010 | |
Cytometry38 | 0.009 | 0.001 | 0.010 | |
Cytometry39 | 0.011 | 0.001 | 0.012 | |
Cytometry4 | 0.008 | 0.003 | 0.011 | |
Cytometry40 | 0.024 | 0.002 | 0.026 | |
Cytometry5 | 0.011 | 0.000 | 0.011 | |
Cytometry6 | 0.009 | 0.002 | 0.010 | |
Cytometry7 | 0.011 | 0.001 | 0.012 | |
Cytometry8 | 0.01 | 0.00 | 0.01 | |
Cytometry9 | 0.016 | 0.002 | 0.018 | |
buildDatabase | 0.408 | 0.038 | 0.446 | |
cytometry.diagnosis | 0.002 | 0.000 | 0.002 | |
noise.types | 0.002 | 0.000 | 0.001 | |