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This page was generated on 2024-11-28 15:01 -0500 (Thu, 28 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4748
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 282/429HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.19.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2024-11-28 07:30 -0500 (Thu, 28 Nov 2024)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: devel
git_last_commit: 780c0d1
git_last_commit_date: 2024-10-29 09:51:11 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published


CHECK results for optimalFlowData on nebbiolo1

To the developers/maintainers of the optimalFlowData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: optimalFlowData
Version: 1.19.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings optimalFlowData_1.19.0.tar.gz
StartedAt: 2024-11-28 13:27:25 -0500 (Thu, 28 Nov 2024)
EndedAt: 2024-11-28 13:32:06 -0500 (Thu, 28 Nov 2024)
EllapsedTime: 280.5 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings optimalFlowData_1.19.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/optimalFlowData.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 97.4Mb
  sub-directories of 1Mb or more:
    data  97.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 97.2 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.


Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0220.0140.035
Cytometry100.0150.0080.023
Cytometry110.0180.0070.024
Cytometry120.0160.0080.024
Cytometry130.0160.0080.024
Cytometry140.0230.0090.032
Cytometry150.0110.0020.014
Cytometry160.0110.0030.013
Cytometry170.0370.0180.054
Cytometry180.0310.0160.047
Cytometry190.0190.0020.021
Cytometry20.0460.0060.052
Cytometry200.0320.0010.033
Cytometry210.0430.0020.045
Cytometry220.0190.0020.021
Cytometry230.0210.0060.027
Cytometry240.0140.0120.026
Cytometry250.0170.0090.025
Cytometry260.0190.0030.022
Cytometry270.0500.0110.061
Cytometry280.0770.0180.095
Cytometry290.0440.0140.058
Cytometry30.0100.0010.010
Cytometry300.0390.0010.040
Cytometry310.0360.0070.043
Cytometry320.0400.0020.043
Cytometry330.0490.0020.051
Cytometry340.0490.0040.053
Cytometry350.0350.0020.038
Cytometry360.0080.0030.011
Cytometry370.0100.0010.010
Cytometry380.0090.0010.010
Cytometry390.0110.0010.012
Cytometry40.0080.0030.011
Cytometry400.0240.0020.026
Cytometry50.0110.0000.011
Cytometry60.0090.0020.010
Cytometry70.0110.0010.012
Cytometry80.010.000.01
Cytometry90.0160.0020.018
buildDatabase0.4080.0380.446
cytometry.diagnosis0.0020.0000.002
noise.types0.0020.0000.001