##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:mtbls2.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings mtbls2_1.37.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/mtbls2.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘mtbls2/DESCRIPTION’ ... OK
* this is package ‘mtbls2’ version ‘1.37.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mtbls2’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 294.4Mb
  sub-directories of 1Mb or more:
    R         4.4Mb
    data      3.0Mb
    mzData  128.6Mb
    mzML    155.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘MTBLS2-xcms3.Rmd-disable’ ‘MTBLS2.Rmd-disable’ ‘MTBLS2.Rmd-disabled’
  ‘MTBLS2.bib’ ‘mtbls2diffreport_box/001.png’
  ‘mtbls2diffreport_box/002.png’ ‘mtbls2diffreport_box/003.png’
  ‘mtbls2diffreport_box/004.png’ ‘mtbls2diffreport_box/005.png’
  ‘mtbls2diffreport_box/006.png’ ‘mtbls2diffreport_box/007.png’
  ‘mtbls2diffreport_box/008.png’ ‘mtbls2diffreport_box/009.png’
  ‘mtbls2diffreport_box/010.png’ ‘mtbls2diffreport_box/011.png’
  ‘mtbls2diffreport_box/012.png’ ‘mtbls2diffreport_box/013.png’
  ‘mtbls2diffreport_box/014.png’ ‘mtbls2diffreport_box/015.png’
  ‘mtbls2diffreport_box/016.png’ ‘mtbls2diffreport_box/017.png’
  ‘mtbls2diffreport_box/018.png’ ‘mtbls2diffreport_box/019.png’
  ‘mtbls2diffreport_box/020.png’ ‘mtbls2diffreport_eic/001.png’
  ‘mtbls2diffreport_eic/002.png’ ‘mtbls2diffreport_eic/003.png’
  ‘mtbls2diffreport_eic/004.png’ ‘mtbls2diffreport_eic/005.png’
  ‘mtbls2diffreport_eic/006.png’ ‘mtbls2diffreport_eic/007.png’
  ‘mtbls2diffreport_eic/008.png’ ‘mtbls2diffreport_eic/009.png’
  ‘mtbls2diffreport_eic/010.png’ ‘mtbls2diffreport_eic/011.png’
  ‘mtbls2diffreport_eic/012.png’ ‘mtbls2diffreport_eic/013.png’
  ‘mtbls2diffreport_eic/014.png’ ‘mtbls2diffreport_eic/015.png’
  ‘mtbls2diffreport_eic/016.png’ ‘mtbls2diffreport_eic/017.png’
  ‘mtbls2diffreport_eic/018.png’ ‘mtbls2diffreport_eic/019.png’
  ‘mtbls2diffreport_eic/020.png’
* checking examples ... OK
* checking package vignettes ... NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/mtbls2.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL mtbls2
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘mtbls2’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mtbls2)