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This page was generated on 2024-11-28 15:01 -0500 (Thu, 28 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4748
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 248/429HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.45.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2024-11-28 07:30 -0500 (Thu, 28 Nov 2024)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: devel
git_last_commit: fd195d7
git_last_commit_date: 2024-10-29 09:29:36 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for miRNATarget on nebbiolo1

To the developers/maintainers of the miRNATarget package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: miRNATarget
Version: 1.45.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings miRNATarget_1.45.0.tar.gz
StartedAt: 2024-11-28 13:13:52 -0500 (Thu, 28 Nov 2024)
EndedAt: 2024-11-28 13:18:50 -0500 (Thu, 28 Nov 2024)
EllapsedTime: 297.1 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings miRNATarget_1.45.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/miRNATarget.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.45.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 54.7Mb
  sub-directories of 1Mb or more:
    data  54.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.


Installation output

miRNATarget.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0130.0020.013
HS_refseq_to_affy_hc_g1100.0040.0000.004
HS_refseq_to_affy_hg_focus0.0150.0010.015
HS_refseq_to_affy_hg_u133_plus_20.0520.0030.054
HS_refseq_to_affy_hg_u133a0.0310.0010.032
HS_refseq_to_affy_hg_u133a_20.0300.0010.032
HS_refseq_to_affy_hg_u133b0.0150.0000.016
HS_refseq_to_affy_hg_u95a0.0180.0020.021
HS_refseq_to_affy_hg_u95av20.0180.0000.019
HS_refseq_to_affy_hg_u95b0.0110.0010.012
HS_refseq_to_affy_hg_u95c0.0080.0010.009
HS_refseq_to_affy_hg_u95d0.0050.0000.005
HS_refseq_to_affy_hg_u95e0.0080.0000.009
HS_refseq_to_affy_huex_1_0_st_v20.6770.0220.698
HS_refseq_to_affy_hugene_1_0_st_v10.0460.0000.047
HS_refseq_to_affy_hugenefl0.0620.0010.063
HS_refseq_to_affy_u133_x3p0.0600.0010.060
HS_refseq_to_agilent_cgh_44b0.0100.0010.011
HS_refseq_to_agilent_wholegenome0.0610.0010.063
HS_refseq_to_canonical_transcript_stable_id0.0590.0000.060
HS_refseq_to_ccds0.030.000.03
HS_refseq_to_codelink0.0310.0010.032
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0000.0010.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0010.001
HS_refseq_to_embl0.6030.0100.612
HS_refseq_to_ensembl_exon_id0.0020.0000.001
HS_refseq_to_ensembl_gene_id0.0470.0010.047
HS_refseq_to_ensembl_peptide_id0.0370.0010.037
HS_refseq_to_ensembl_transcript_id0.0460.0000.045
HS_refseq_to_entrezgene0.0420.0010.043
HS_refseq_to_hgnc_id0.0380.0000.039
HS_refseq_to_hgnc_symbol0.0870.0050.092
HS_refseq_to_hgnc_transcript_name0.0410.0000.041
HS_refseq_to_illumina_humanht_120.0410.0020.042
HS_refseq_to_illumina_humanwg_6_v10.0370.0020.039
HS_refseq_to_illumina_humanwg_6_v20.0320.0000.033
HS_refseq_to_illumina_humanwg_6_v30.0390.0000.040
HS_refseq_to_interpro0.1050.0000.106
HS_refseq_to_ipi0.0960.0030.100
HS_refseq_to_merops0.0030.0010.003
HS_refseq_to_pdb0.0770.0030.079
HS_refseq_to_pfam0.0960.0010.097
HS_refseq_to_phalanx_onearray0.0350.0000.035
HS_refseq_to_protein_id0.8260.0080.834
HS_refseq_to_refseq_dna0.0500.0010.050
HS_refseq_to_refseq_genomic0.0010.0000.001
HS_refseq_to_refseq_peptide0.0820.0000.082
HS_refseq_to_rfam0.0010.0010.002
HS_refseq_to_rfam_gene_name0.0000.0010.001
HS_refseq_to_rfam_transcript_name0.0010.0000.001
HS_refseq_to_smart0.0300.0010.031
HS_refseq_to_tigrfam0.0020.0020.004
HS_refseq_to_ucsc0.0410.0000.042
HS_refseq_to_unigene0.0540.0000.054
HS_refseq_to_uniprot_genename0.0370.0010.037
HS_refseq_to_uniprot_genename_transcript_name0.0010.0010.001
HS_refseq_to_uniprot_sptrembl0.0010.0000.001
HS_refseq_to_uniprot_swissprot0.0010.0000.002
HS_refseq_to_uniprot_swissprot_accession0.0010.0010.001
HS_refseq_to_wikigene_id0.0000.0010.001
HS_refseq_to_wikigene_name0.0400.0010.042
MM_conv_id0.0020.0010.002
MM_refseq_to_affy_mg_u74a0.0150.0000.015
MM_refseq_to_affy_mg_u74av20.0110.0010.013
MM_refseq_to_affy_mg_u74b0.0100.0000.011
MM_refseq_to_affy_mg_u74bv20.0080.0030.010
MM_refseq_to_affy_mg_u74c0.0030.0010.004
MM_refseq_to_affy_mg_u74cv20.0040.0010.006
MM_refseq_to_affy_moe430a0.0280.0010.029
MM_refseq_to_affy_moe430b0.0120.0010.014
MM_refseq_to_affy_moex_1_0_st_v10.5860.0070.593
MM_refseq_to_affy_mogene_1_0_st_v10.0330.0010.034
MM_refseq_to_affy_mouse430_20.0370.0010.038
MM_refseq_to_affy_mouse430a_20.0250.0000.025
MM_refseq_to_affy_mu11ksuba0.0080.0000.008
MM_refseq_to_affy_mu11ksubb0.0050.0010.006
MM_refseq_to_agilent_wholegenome0.0500.0000.051
MM_refseq_to_canonical_transcript_stable_id0.0460.0020.048
MM_refseq_to_ccds0.0230.0010.024
MM_refseq_to_codelink0.0240.0010.026
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
MM_refseq_to_embl0.2560.0020.259
MM_refseq_to_ensembl_exon_id0.0010.0000.002
MM_refseq_to_ensembl_gene_id0.0310.0000.032
MM_refseq_to_ensembl_peptide_id0.0300.0000.031
MM_refseq_to_ensembl_transcript_id0.0320.0010.033
MM_refseq_to_entrezgene0.0270.0010.028
MM_refseq_to_fantom0.0830.0010.083
MM_refseq_to_illumina_mousewg_6_v10.0420.0000.042
MM_refseq_to_illumina_mousewg_6_v20.0420.0000.042
MM_refseq_to_interpro0.0880.0020.090
MM_refseq_to_ipi0.0000.0010.001
MM_refseq_to_merops0.0030.0010.003
MM_refseq_to_mgi_id0.0310.0010.032
MM_refseq_to_mgi_symbol0.0320.0000.033
MM_refseq_to_mgi_transcript_name0.0350.0000.035
MM_refseq_to_pdb0.0080.0010.008
MM_refseq_to_pfam0.0530.0000.052
MM_refseq_to_phalanx_onearray0.0300.0020.031
MM_refseq_to_protein_id0.3320.0020.334
MM_refseq_to_refseq_dna0.0390.0010.041
MM_refseq_to_refseq_peptide0.0610.0010.062
MM_refseq_to_rfam0.0010.0000.002
MM_refseq_to_rfam_gene_name0.0010.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0250.0000.026
MM_refseq_to_tigrfam0.0030.0000.004
MM_refseq_to_ucsc0.0330.0000.032
MM_refseq_to_unigene0.0430.0000.042
MM_refseq_to_uniprot_genename0.1890.0010.189
MM_refseq_to_uniprot_genename_transcript_name0.0000.0020.002
MM_refseq_to_uniprot_sptrembl0.0010.0000.001
MM_refseq_to_uniprot_swissprot0.0020.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0000.0010.001
MM_refseq_to_wikigene_id0.0010.0000.001
MM_refseq_to_wikigene_name0.0320.0000.033
TBL20.6250.0910.717
TBL2_HS0.9390.1661.106
TBL2_MM0.5250.1130.639
conv_id0.0020.0000.002
id_conv0.0260.0010.027