Back to Build/check report for BioC 3.21 experimental data |
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This page was generated on 2024-11-28 15:01 -0500 (Thu, 28 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 248/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
miRNATarget 1.45.0 (landing page) Y-h. Taguchi
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the miRNATarget package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: miRNATarget |
Version: 1.45.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings miRNATarget_1.45.0.tar.gz |
StartedAt: 2024-11-28 13:13:52 -0500 (Thu, 28 Nov 2024) |
EndedAt: 2024-11-28 13:18:50 -0500 (Thu, 28 Nov 2024) |
EllapsedTime: 297.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: miRNATarget.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings miRNATarget_1.45.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/miRNATarget.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘miRNATarget/DESCRIPTION’ ... OK * this is package ‘miRNATarget’ version ‘1.45.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: vignettes/.goutputstream-8N717W These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘miRNATarget’ can be installed ... OK * checking installed package size ... INFO installed size is 54.7Mb sub-directories of 1Mb or more: data 54.4Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.21-data-experiment/meat/miRNATarget.Rcheck/00check.log’ for details.
miRNATarget.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL miRNATarget ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘miRNATarget’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miRNATarget)
miRNATarget.Rcheck/miRNATarget-Ex.timings
name | user | system | elapsed | |
HS_conv_id | 0.013 | 0.002 | 0.013 | |
HS_refseq_to_affy_hc_g110 | 0.004 | 0.000 | 0.004 | |
HS_refseq_to_affy_hg_focus | 0.015 | 0.001 | 0.015 | |
HS_refseq_to_affy_hg_u133_plus_2 | 0.052 | 0.003 | 0.054 | |
HS_refseq_to_affy_hg_u133a | 0.031 | 0.001 | 0.032 | |
HS_refseq_to_affy_hg_u133a_2 | 0.030 | 0.001 | 0.032 | |
HS_refseq_to_affy_hg_u133b | 0.015 | 0.000 | 0.016 | |
HS_refseq_to_affy_hg_u95a | 0.018 | 0.002 | 0.021 | |
HS_refseq_to_affy_hg_u95av2 | 0.018 | 0.000 | 0.019 | |
HS_refseq_to_affy_hg_u95b | 0.011 | 0.001 | 0.012 | |
HS_refseq_to_affy_hg_u95c | 0.008 | 0.001 | 0.009 | |
HS_refseq_to_affy_hg_u95d | 0.005 | 0.000 | 0.005 | |
HS_refseq_to_affy_hg_u95e | 0.008 | 0.000 | 0.009 | |
HS_refseq_to_affy_huex_1_0_st_v2 | 0.677 | 0.022 | 0.698 | |
HS_refseq_to_affy_hugene_1_0_st_v1 | 0.046 | 0.000 | 0.047 | |
HS_refseq_to_affy_hugenefl | 0.062 | 0.001 | 0.063 | |
HS_refseq_to_affy_u133_x3p | 0.060 | 0.001 | 0.060 | |
HS_refseq_to_agilent_cgh_44b | 0.010 | 0.001 | 0.011 | |
HS_refseq_to_agilent_wholegenome | 0.061 | 0.001 | 0.063 | |
HS_refseq_to_canonical_transcript_stable_id | 0.059 | 0.000 | 0.060 | |
HS_refseq_to_ccds | 0.03 | 0.00 | 0.03 | |
HS_refseq_to_codelink | 0.031 | 0.001 | 0.032 | |
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k | 0.001 | 0.000 | 0.002 | |
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1 | 0.000 | 0.001 | 0.002 | |
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2 | 0.001 | 0.001 | 0.001 | |
HS_refseq_to_embl | 0.603 | 0.010 | 0.612 | |
HS_refseq_to_ensembl_exon_id | 0.002 | 0.000 | 0.001 | |
HS_refseq_to_ensembl_gene_id | 0.047 | 0.001 | 0.047 | |
HS_refseq_to_ensembl_peptide_id | 0.037 | 0.001 | 0.037 | |
HS_refseq_to_ensembl_transcript_id | 0.046 | 0.000 | 0.045 | |
HS_refseq_to_entrezgene | 0.042 | 0.001 | 0.043 | |
HS_refseq_to_hgnc_id | 0.038 | 0.000 | 0.039 | |
HS_refseq_to_hgnc_symbol | 0.087 | 0.005 | 0.092 | |
HS_refseq_to_hgnc_transcript_name | 0.041 | 0.000 | 0.041 | |
HS_refseq_to_illumina_humanht_12 | 0.041 | 0.002 | 0.042 | |
HS_refseq_to_illumina_humanwg_6_v1 | 0.037 | 0.002 | 0.039 | |
HS_refseq_to_illumina_humanwg_6_v2 | 0.032 | 0.000 | 0.033 | |
HS_refseq_to_illumina_humanwg_6_v3 | 0.039 | 0.000 | 0.040 | |
HS_refseq_to_interpro | 0.105 | 0.000 | 0.106 | |
HS_refseq_to_ipi | 0.096 | 0.003 | 0.100 | |
HS_refseq_to_merops | 0.003 | 0.001 | 0.003 | |
HS_refseq_to_pdb | 0.077 | 0.003 | 0.079 | |
HS_refseq_to_pfam | 0.096 | 0.001 | 0.097 | |
HS_refseq_to_phalanx_onearray | 0.035 | 0.000 | 0.035 | |
HS_refseq_to_protein_id | 0.826 | 0.008 | 0.834 | |
HS_refseq_to_refseq_dna | 0.050 | 0.001 | 0.050 | |
HS_refseq_to_refseq_genomic | 0.001 | 0.000 | 0.001 | |
HS_refseq_to_refseq_peptide | 0.082 | 0.000 | 0.082 | |
HS_refseq_to_rfam | 0.001 | 0.001 | 0.002 | |
HS_refseq_to_rfam_gene_name | 0.000 | 0.001 | 0.001 | |
HS_refseq_to_rfam_transcript_name | 0.001 | 0.000 | 0.001 | |
HS_refseq_to_smart | 0.030 | 0.001 | 0.031 | |
HS_refseq_to_tigrfam | 0.002 | 0.002 | 0.004 | |
HS_refseq_to_ucsc | 0.041 | 0.000 | 0.042 | |
HS_refseq_to_unigene | 0.054 | 0.000 | 0.054 | |
HS_refseq_to_uniprot_genename | 0.037 | 0.001 | 0.037 | |
HS_refseq_to_uniprot_genename_transcript_name | 0.001 | 0.001 | 0.001 | |
HS_refseq_to_uniprot_sptrembl | 0.001 | 0.000 | 0.001 | |
HS_refseq_to_uniprot_swissprot | 0.001 | 0.000 | 0.002 | |
HS_refseq_to_uniprot_swissprot_accession | 0.001 | 0.001 | 0.001 | |
HS_refseq_to_wikigene_id | 0.000 | 0.001 | 0.001 | |
HS_refseq_to_wikigene_name | 0.040 | 0.001 | 0.042 | |
MM_conv_id | 0.002 | 0.001 | 0.002 | |
MM_refseq_to_affy_mg_u74a | 0.015 | 0.000 | 0.015 | |
MM_refseq_to_affy_mg_u74av2 | 0.011 | 0.001 | 0.013 | |
MM_refseq_to_affy_mg_u74b | 0.010 | 0.000 | 0.011 | |
MM_refseq_to_affy_mg_u74bv2 | 0.008 | 0.003 | 0.010 | |
MM_refseq_to_affy_mg_u74c | 0.003 | 0.001 | 0.004 | |
MM_refseq_to_affy_mg_u74cv2 | 0.004 | 0.001 | 0.006 | |
MM_refseq_to_affy_moe430a | 0.028 | 0.001 | 0.029 | |
MM_refseq_to_affy_moe430b | 0.012 | 0.001 | 0.014 | |
MM_refseq_to_affy_moex_1_0_st_v1 | 0.586 | 0.007 | 0.593 | |
MM_refseq_to_affy_mogene_1_0_st_v1 | 0.033 | 0.001 | 0.034 | |
MM_refseq_to_affy_mouse430_2 | 0.037 | 0.001 | 0.038 | |
MM_refseq_to_affy_mouse430a_2 | 0.025 | 0.000 | 0.025 | |
MM_refseq_to_affy_mu11ksuba | 0.008 | 0.000 | 0.008 | |
MM_refseq_to_affy_mu11ksubb | 0.005 | 0.001 | 0.006 | |
MM_refseq_to_agilent_wholegenome | 0.050 | 0.000 | 0.051 | |
MM_refseq_to_canonical_transcript_stable_id | 0.046 | 0.002 | 0.048 | |
MM_refseq_to_ccds | 0.023 | 0.001 | 0.024 | |
MM_refseq_to_codelink | 0.024 | 0.001 | 0.026 | |
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k | 0.002 | 0.000 | 0.001 | |
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1 | 0.001 | 0.000 | 0.001 | |
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2 | 0.001 | 0.000 | 0.001 | |
MM_refseq_to_embl | 0.256 | 0.002 | 0.259 | |
MM_refseq_to_ensembl_exon_id | 0.001 | 0.000 | 0.002 | |
MM_refseq_to_ensembl_gene_id | 0.031 | 0.000 | 0.032 | |
MM_refseq_to_ensembl_peptide_id | 0.030 | 0.000 | 0.031 | |
MM_refseq_to_ensembl_transcript_id | 0.032 | 0.001 | 0.033 | |
MM_refseq_to_entrezgene | 0.027 | 0.001 | 0.028 | |
MM_refseq_to_fantom | 0.083 | 0.001 | 0.083 | |
MM_refseq_to_illumina_mousewg_6_v1 | 0.042 | 0.000 | 0.042 | |
MM_refseq_to_illumina_mousewg_6_v2 | 0.042 | 0.000 | 0.042 | |
MM_refseq_to_interpro | 0.088 | 0.002 | 0.090 | |
MM_refseq_to_ipi | 0.000 | 0.001 | 0.001 | |
MM_refseq_to_merops | 0.003 | 0.001 | 0.003 | |
MM_refseq_to_mgi_id | 0.031 | 0.001 | 0.032 | |
MM_refseq_to_mgi_symbol | 0.032 | 0.000 | 0.033 | |
MM_refseq_to_mgi_transcript_name | 0.035 | 0.000 | 0.035 | |
MM_refseq_to_pdb | 0.008 | 0.001 | 0.008 | |
MM_refseq_to_pfam | 0.053 | 0.000 | 0.052 | |
MM_refseq_to_phalanx_onearray | 0.030 | 0.002 | 0.031 | |
MM_refseq_to_protein_id | 0.332 | 0.002 | 0.334 | |
MM_refseq_to_refseq_dna | 0.039 | 0.001 | 0.041 | |
MM_refseq_to_refseq_peptide | 0.061 | 0.001 | 0.062 | |
MM_refseq_to_rfam | 0.001 | 0.000 | 0.002 | |
MM_refseq_to_rfam_gene_name | 0.001 | 0.000 | 0.001 | |
MM_refseq_to_rfam_transcript_name | 0.001 | 0.000 | 0.001 | |
MM_refseq_to_smart | 0.025 | 0.000 | 0.026 | |
MM_refseq_to_tigrfam | 0.003 | 0.000 | 0.004 | |
MM_refseq_to_ucsc | 0.033 | 0.000 | 0.032 | |
MM_refseq_to_unigene | 0.043 | 0.000 | 0.042 | |
MM_refseq_to_uniprot_genename | 0.189 | 0.001 | 0.189 | |
MM_refseq_to_uniprot_genename_transcript_name | 0.000 | 0.002 | 0.002 | |
MM_refseq_to_uniprot_sptrembl | 0.001 | 0.000 | 0.001 | |
MM_refseq_to_uniprot_swissprot | 0.002 | 0.000 | 0.001 | |
MM_refseq_to_uniprot_swissprot_accession | 0.000 | 0.001 | 0.001 | |
MM_refseq_to_wikigene_id | 0.001 | 0.000 | 0.001 | |
MM_refseq_to_wikigene_name | 0.032 | 0.000 | 0.033 | |
TBL2 | 0.625 | 0.091 | 0.717 | |
TBL2_HS | 0.939 | 0.166 | 1.106 | |
TBL2_MM | 0.525 | 0.113 | 0.639 | |
conv_id | 0.002 | 0.000 | 0.002 | |
id_conv | 0.026 | 0.001 | 0.027 | |