Back to Build/check report for BioC 3.21 experimental data |
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This page was generated on 2024-11-28 15:01 -0500 (Thu, 28 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4748 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 146/429 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
gDRtestData 1.5.1 (landing page) Arkadiusz Gladki
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
To the developers/maintainers of the gDRtestData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: gDRtestData |
Version: 1.5.1 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:gDRtestData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings gDRtestData_1.5.1.tar.gz |
StartedAt: 2024-11-28 12:36:52 -0500 (Thu, 28 Nov 2024) |
EndedAt: 2024-11-28 12:41:12 -0500 (Thu, 28 Nov 2024) |
EllapsedTime: 260.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: gDRtestData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:gDRtestData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings gDRtestData_1.5.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/gDRtestData.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘gDRtestData/DESCRIPTION’ ... OK * this is package ‘gDRtestData’ version ‘1.5.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gDRtestData’ can be installed ... OK * checking installed package size ... INFO installed size is 8.6Mb sub-directories of 1Mb or more: testdata 8.4Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed prepareMergedData 15.504 0.171 15.68 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
gDRtestData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL gDRtestData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘gDRtestData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gDRtestData)
gDRtestData.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(gDRtestData) > > test_check("gDRtestData") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ] > > proc.time() user system elapsed 0.567 0.060 0.615
gDRtestData.Rcheck/gDRtestData-Ex.timings
name | user | system | elapsed | |
add_concentration | 0.029 | 0.002 | 0.032 | |
add_data_replicates | 0.004 | 0.001 | 0.004 | |
add_day0_data | 0.010 | 0.001 | 0.011 | |
cell_lines | 0.004 | 0.001 | 0.005 | |
create_synthetic_cell_lines | 0.003 | 0.001 | 0.005 | |
create_synthetic_drugs | 0.003 | 0.000 | 0.003 | |
drugs | 0.003 | 0.000 | 0.003 | |
generate_e_inf | 0.039 | 0.118 | 0.157 | |
generate_ec50 | 0.030 | 0.131 | 0.162 | |
generate_hill_coef | 0.017 | 0.133 | 0.150 | |
generate_response_data | 0.023 | 0.000 | 0.024 | |
get_test_dataset_paths | 0.002 | 0.000 | 0.003 | |
prepareCodilutionData | 0.032 | 0.001 | 0.033 | |
prepareComboMergedData | 1.010 | 0.019 | 1.030 | |
prepareData | 1.810 | 0.083 | 1.893 | |
prepareMergedData | 15.504 | 0.171 | 15.680 | |