Back to Build/check report for BioC 3.21 experimental data |
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This page was generated on 2025-01-30 15:01 -0500 (Thu, 30 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4703 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 140/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
frmaExampleData 1.43.0 (landing page) Matthew N. McCall
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
To the developers/maintainers of the frmaExampleData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: frmaExampleData |
Version: 1.43.0 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings frmaExampleData_1.43.0.tar.gz |
StartedAt: 2025-01-30 12:07:08 -0500 (Thu, 30 Jan 2025) |
EndedAt: 2025-01-30 12:08:57 -0500 (Thu, 30 Jan 2025) |
EllapsedTime: 109.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: frmaExampleData.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings frmaExampleData_1.43.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/frmaExampleData.Rcheck’ * using R Under development (unstable) (2025-01-20 r87609) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘frmaExampleData/DESCRIPTION’ ... OK * this is package ‘frmaExampleData’ version ‘1.43.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘frmaExampleData’ can be installed ... OK * checking installed package size ... INFO installed size is 16.6Mb sub-directories of 1Mb or more: data 16.5Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... WARNING Failed with error: 'there is no package called 'affy'' Error loading dataset 'AffyBatch133a': Error in .requirePackage(package) : unable to load required package 'affy' Failed with error: 'there is no package called 'affy'' Error loading dataset 'AffyBatch133atag': Error in .requirePackage(package) : unable to load required package 'affy' Failed with error: 'there is no package called 'affy'' Error loading dataset 'AffyBatch133plus2': Error in .requirePackage(package) : unable to load required package 'affy' Failed with error: 'there is no package called 'affy'' Error loading dataset 'AffyBatchExample': Error in .requirePackage(package) : unable to load required package 'affy' The dataset(s) may use package(s) not declared in Depends/Imports. * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress AffyBatch133a.rda 10.8Mb 6.9Mb xz AffyBatch133atag.rda 2.2Mb 891Kb xz AffyBatch133plus2.rda 5.4Mb 1.9Mb xz AffyBatchExample.rda 4.3Mb 2.3Mb xz * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE See ‘/home/biocbuild/bbs-3.21-data-experiment/meat/frmaExampleData.Rcheck/00check.log’ for details.
frmaExampleData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL frmaExampleData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘frmaExampleData’ ... ** this is package ‘frmaExampleData’ version ‘1.43.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frmaExampleData)
frmaExampleData.Rcheck/frmaExampleData-Ex.timings
name | user | system | elapsed | |
AffyBatch133a | 0.543 | 0.032 | 0.575 | |
AffyBatch133atag | 0.204 | 0.007 | 0.211 | |
AffyBatch133plus2 | 0.816 | 0.043 | 0.861 | |
AffyBatchExample | 0.231 | 0.012 | 0.243 | |