| Back to Build/check report for BioC 3.21 experimental data |
|
This page was generated on 2024-12-10 15:01 -0500 (Tue, 10 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4749 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 288/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| PasillaTranscriptExpr 1.35.0 (landing page) Malgorzata Nowicka
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK |  | |||||||
|
To the developers/maintainers of the PasillaTranscriptExpr package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: PasillaTranscriptExpr |
| Version: 1.35.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:PasillaTranscriptExpr.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings PasillaTranscriptExpr_1.35.0.tar.gz |
| StartedAt: 2024-12-10 13:16:19 -0500 (Tue, 10 Dec 2024) |
| EndedAt: 2024-12-10 13:19:13 -0500 (Tue, 10 Dec 2024) |
| EllapsedTime: 173.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PasillaTranscriptExpr.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:PasillaTranscriptExpr.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings PasillaTranscriptExpr_1.35.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/PasillaTranscriptExpr.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘PasillaTranscriptExpr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PasillaTranscriptExpr’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PasillaTranscriptExpr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS’:
Cannot process chunk/lines:
v0.1.1: - Adapted package for Bioconductor submission
Cannot process chunk/lines:
v0.99.0: - Bioconductor submission
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.21-data-experiment/meat/PasillaTranscriptExpr.Rcheck/00check.log’
for details.
PasillaTranscriptExpr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL PasillaTranscriptExpr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘PasillaTranscriptExpr’ ... ** using staged installation ** inst ** help No man pages found in package ‘PasillaTranscriptExpr’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PasillaTranscriptExpr)