| Back to Rapid builds (Linux only) of a subset of BioC 3.21 Report updated every 6 hours |
This page was generated on 2025-03-23 12:12 -0400 (Sun, 23 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 869 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 90/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| gcrma 2.79.0 (landing page) Z. Wu
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
|
To the developers/maintainers of the gcrma package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: gcrma |
| Version: 2.79.0 |
| Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data gcrma |
| StartedAt: 2025-03-23 12:10:26 -0400 (Sun, 23 Mar 2025) |
| EndedAt: 2025-03-23 12:10:35 -0400 (Sun, 23 Mar 2025) |
| EllapsedTime: 9.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data gcrma
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* checking for file ‘gcrma/DESCRIPTION’ ... OK
* preparing ‘gcrma’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘gcrma’ ...
** this is package ‘gcrma’ version ‘2.79.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c baseProfile.c -o baseProfile.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c computeAffinities.c -o computeAffinities.o
gcc -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c postmean.c -o postmean.o
gcc -shared -L/usr/local/lib -o gcrma.so baseProfile.o computeAffinities.o postmean.o
installing to /tmp/RtmpsvMfzg/Rinst1c0f0e4f886b34/00LOCK-gcrma/00new/gcrma/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Error in as.list.environment(base::getNamespace("gcrma"), all.names = TRUE) :
lazy-load database '/tmp/RtmpsvMfzg/Rinst1c0f0e4f886b34/gcrma/R/gcrma.rdb' is corrupt
Calls: <Anonymous> ... withCallingHandlers -> <Anonymous> -> <Anonymous> -> as.list.environment
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpsvMfzg/Rinst1c0f0e4f886b34/gcrma’
-----------------------------------
ERROR: package installation failed