Back to Rapid builds (Linux only) of a subset of BioC 3.21 Report updated every 6 hours |
This page was generated on 2025-03-26 00:43 -0400 (Wed, 26 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 870 |
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Package 130/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
MassSpecWavelet 1.73.1 (landing page) Sergio Oller Moreno
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
To the developers/maintainers of the MassSpecWavelet package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MassSpecWavelet |
Version: 1.73.1 |
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data MassSpecWavelet |
StartedAt: 2025-03-26 00:27:32 -0400 (Wed, 26 Mar 2025) |
EndedAt: 2025-03-26 00:27:38 -0400 (Wed, 26 Mar 2025) |
EllapsedTime: 5.5 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data MassSpecWavelet ### ############################################################################## ############################################################################## * checking for file ‘MassSpecWavelet/DESCRIPTION’ ... OK * preparing ‘MassSpecWavelet’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘FindingLocalMaxima.Rmd’ using rmarkdown Write Error Write Error Error: processing vignette 'FindingLocalMaxima.Rmd' failed with diagnostics: Error writing to connection: No space left on device --- failed re-building ‘FindingLocalMaxima.Rmd’ --- re-building ‘MassSpecWavelet.Rmd’ using rmarkdown Warning in close.connection(con) : Problem closing connection: No space left on device Warning in dir.create(dirname(name), recursive = TRUE) : cannot create dir '/tmp/RtmpS4YxVl/Rbuild368f8423a79920/MassSpecWavelet/vignettes/MassSpecWavelet_files', reason 'No space left on device' Quitting from MassSpecWavelet.Rmd:65-68 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `value[[3L]]()`: ! could not open file '/tmp/RtmpS4YxVl/Rbuild368f8423a79920/MassSpecWavelet/vignettes/MassSpecWavelet_files/figure-html/unnamed-chunk-4-1.png' --- Backtrace: ▆ 1. └─tools::buildVignettes(dir = ".", tangle = TRUE) 2. ├─base::tryCatch(...) 3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 6. └─engine$weave(file, quiet = quiet, encoding = enc) 7. └─knitr:::vweave_rmarkdown(...) 8. └─rmarkdown::render(...) 9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 10. └─knitr:::process_file(text, output) 11. ├─xfun:::handle_error(...) 12. ├─base::withCallingHandlers(...) 13. └─knitr:::process_group(group) 14. └─knitr:::call_block(x) 15. └─knitr:::block_exec(params) 16. └─knitr:::eng_r(options) 17. ├─base::unlist(sew(res, options)) 18. ├─knitr::sew(res, options) 19. └─knitr:::sew.list(res, options) 20. └─base::lapply(x, sew, options, ...) 21. ├─knitr (local) FUN(X[[i]], ...) 22. └─knitr:::sew.recordedplot(X[[i]], ...) 23. └─base::mapply(...) 24. └─knitr (local) `<fn>`(...) 25. ├─knitr:::in_base_dir(...) 26. │ └─knitr:::in_dir(d, expr) 27. └─knitr:::plot2dev(...) 28. ├─base::print(plot) 29. └─grDevices:::print.recordedplot(plot) 30. └─grDevices::replayPlot(x) 31. └─base::tryCatch(.External2(C_playSnapshot, x), error = restore) 32. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 33. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 34. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MassSpecWavelet.Rmd' failed with diagnostics: could not open file '/tmp/RtmpS4YxVl/Rbuild368f8423a79920/MassSpecWavelet/vignettes/MassSpecWavelet_files/figure-html/unnamed-chunk-4-1.png' --- failed re-building ‘MassSpecWavelet.Rmd’ SUMMARY: processing the following files failed: ‘FindingLocalMaxima.Rmd’ ‘MassSpecWavelet.Rmd’ Error: Vignette re-building failed. Execution halted