Back to Long Tests report for BioC 3.20

This page was generated on 2024-06-29 23:55 -0400 (Sat, 29 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4693
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4408
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4407
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.9.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-06-29 09:55 -0400 (Sat, 29 Jun 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 347e93f
git_last_commit_date: 2024-04-30 11:41:09 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino6Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on palomino6

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.9.0
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
StartedAt: 2024-06-29 16:05:21 -0400 (Sat, 29 Jun 2024)
EndedAt: 2024-06-29 16:07:51 -0400 (Sat, 29 Jun 2024)
EllapsedTime: 149.6 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

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Type 'license()' or 'licence()' for distribution details.

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-06-29 16:06:11.124][biodb::testContext]
biodb.INFO [2024-06-29 16:06:11.127][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-29 16:06:11.128][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-06-29 16:06:11.129][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-29 16:06:11.130][biodb::testContext]
biodb.INFO [2024-06-29 16:06:11.135][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-29 16:06:11.137][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-29 16:06:11.144][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:11.145][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-29 16:06:11.146][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-29 16:06:11.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.150][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-29 16:06:11.164][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-29 16:06:11.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.168][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-29 16:06:11.169][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-29 16:06:11.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.173][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-29 16:06:11.174][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-29 16:06:11.175][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-29 16:06:11.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.179][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-29 16:06:11.180][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-29 16:06:11.181][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-29 16:06:11.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.185][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-29 16:06:11.186][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-29 16:06:11.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.190][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-29 16:06:11.191][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-29 16:06:11.192][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-29 16:06:11.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.196][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-29 16:06:11.197][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-29 16:06:11.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.203][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-29 16:06:11.204][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-29 16:06:11.206][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-29 16:06:11.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.210][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-29 16:06:11.211][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-29 16:06:11.212][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-29 16:06:11.213][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-29 16:06:11.214][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-29 16:06:11.215][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-29 16:06:11.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.219][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-29 16:06:11.220][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-29 16:06:11.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.224][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-29 16:06:11.225][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-29 16:06:11.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.229][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-29 16:06:11.230][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-29 16:06:11.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.234][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-29 16:06:11.235][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-29 16:06:11.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.239][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-29 16:06:11.240][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-29 16:06:11.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.244][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-29 16:06:11.245][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-29 16:06:11.250][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-29 16:06:11.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.254][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-29 16:06:11.255][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-29 16:06:11.256][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-29 16:06:11.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.262][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-29 16:06:11.297][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.311][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-29 16:06:11.312][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.313][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:11.314][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.315][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.316][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.317][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.319][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-29 16:06:11.321][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:11.322][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.323][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-29 16:06:11.324][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:11.325][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.326][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.327][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:11.327][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:11.327][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:11.327][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-29 16:06:11.327][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-29 16:06:11.328][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:11.329][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:11.330][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:11.331][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:11.332][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:11.333][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:11.334][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.335][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.336][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:11.337][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:11.339][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.340][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.341][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-29 16:06:11.343][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.344][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-29 16:06:11.345][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.346][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:11.347][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.348][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.349][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.350][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.352][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-29 16:06:11.353][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:11.354][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.355][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-29 16:06:11.356][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:11.357][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.358][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.359][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:11.359][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:11.359][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:11.359][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-29 16:06:11.359][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-29 16:06:11.360][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:11.361][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:11.362][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:11.363][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:11.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:11.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:11.366][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.367][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.368][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:11.369][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:11.370][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.371][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.373][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-29 16:06:11.374][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.376][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-29 16:06:11.377][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.378][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:11.379][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.380][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.381][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.382][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.383][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-29 16:06:11.384][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:11.385][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.386][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-29 16:06:11.387][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:11.388][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.389][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.390][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.392][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:11.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:11.393][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:11.395][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:11.396][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:11.396][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:11.397][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.399][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.400][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:11.401][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:11.402][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.403][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.404][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-29 16:06:11.406][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.407][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-29 16:06:11.408][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.409][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:11.410][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.411][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.412][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.413][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.414][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-29 16:06:11.415][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:11.416][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.417][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-29 16:06:11.418][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:11.419][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.421][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:11.422][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.423][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:11.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:11.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:11.426][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:11.427][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:11.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:11.429][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:11.430][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.431][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:11.432][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:11.433][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:11.434][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:11.437][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:11.438][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.527][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-29 16:06:11.531][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-29 16:06:11.532][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-29 16:06:11.533][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-29 16:06:11.535][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-29 16:06:11.536][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-29 16:06:11.538][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-29 16:06:11.539][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-29 16:06:11.541][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-29 16:06:11.542][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-29 16:06:11.543][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-29 16:06:11.545][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-29 16:06:11.546][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-29 16:06:11.548][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-29 16:06:11.549][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-29 16:06:11.550][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-29 16:06:11.552][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-29 16:06:11.553][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-29 16:06:11.554][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-29 16:06:11.556][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-29 16:06:11.557][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-29 16:06:11.559][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-29 16:06:11.560][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-29 16:06:11.561][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-29 16:06:11.563][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-29 16:06:11.564][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-29 16:06:11.565][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-29 16:06:11.567][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-29 16:06:11.568][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-29 16:06:11.569][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-29 16:06:11.571][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-29 16:06:11.572][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-29 16:06:11.574][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-29 16:06:11.575][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-29 16:06:11.576][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-29 16:06:11.578][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-29 16:06:11.579][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-29 16:06:11.580][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-29 16:06:11.582][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-29 16:06:11.583][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-29 16:06:11.584][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-29 16:06:11.586][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-29 16:06:11.587][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-29 16:06:11.589][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-29 16:06:11.590][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-29 16:06:11.591][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-29 16:06:11.593][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-29 16:06:11.594][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-29 16:06:11.595][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-29 16:06:11.597][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-29 16:06:11.598][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-29 16:06:11.600][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-29 16:06:11.601][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-29 16:06:11.602][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-29 16:06:11.604][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-29 16:06:11.605][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-29 16:06:11.606][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-29 16:06:11.608][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-29 16:06:11.609][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-29 16:06:11.611][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-29 16:06:11.612][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-29 16:06:11.613][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-29 16:06:11.615][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-29 16:06:11.616][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-29 16:06:11.617][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-29 16:06:11.619][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-29 16:06:11.620][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-29 16:06:11.621][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-29 16:06:11.623][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-29 16:06:11.624][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-29 16:06:11.625][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-29 16:06:11.627][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-29 16:06:11.628][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-29 16:06:11.630][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-29 16:06:11.631][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-29 16:06:11.632][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-29 16:06:11.634][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-29 16:06:11.636][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-29 16:06:11.637][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-29 16:06:11.638][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-29 16:06:11.640][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-29 16:06:11.642][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-29 16:06:11.648][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-29 16:06:11.665][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-29 16:06:11.667][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-29 16:06:11.670][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:11.671][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.673][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:11.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:11.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:11.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:11.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:11.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:11.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:11.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:12.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:12.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:12.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:12.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:12.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:12.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:12.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:12.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:12.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:12.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:12.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:12.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:12.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:12.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:12.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:12.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:12.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:12.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:12.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:12.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:12.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:12.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:12.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:12.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:12.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:12.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:12.033][bdb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-29 16:06:12.042][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-29 16:06:12.045][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.046][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-29 16:06:12.047][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.048][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:12.049][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.050][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.052][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.053][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.055][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-29 16:06:12.056][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:12.057][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.058][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-29 16:06:12.059][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:12.060][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-29 16:06:12.060][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-29 16:06:12.062][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:12.063][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:12.064][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-29 16:06:12.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:12.067][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:12.068][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:12.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:12.071][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:12.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.073][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:12.073][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-29 16:06:12.074][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:12.075][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:12.077][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.078][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:12.079][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-29 16:06:12.081][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.082][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-29 16:06:12.084][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.118][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:12.119][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.120][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.122][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.123][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.124][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:12.125][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:12.127][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.128][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-29 16:06:12.129][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:12.130][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-29 16:06:12.130][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-29 16:06:12.130][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-29 16:06:12.130][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-29 16:06:12.130][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-29 16:06:12.130][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-29 16:06:12.131][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:12.133][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:12.134][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-29 16:06:12.135][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:12.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:12.137][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:12.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:12.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:12.140][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.142][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:12.142][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:12.143][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:12.144][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:12.145][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.146][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:12.148][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-29 16:06:12.151][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:12.153][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-29 16:06:12.155][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.157][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:12.159][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.160][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.161][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.163][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.164][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:12.165][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:12.167][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.169][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-29 16:06:12.171][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.173][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:12.174][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:12.175][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:12.175][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:12.175][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:12.176][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-29 16:06:12.177][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:12.178][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:12.179][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:12.180][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:12.181][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:12.183][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.185][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:12.185][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:12.185][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-29 16:06:12.186][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:12.187][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:12.189][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.191][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:06:12.192][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-29 16:06:12.194][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.196][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-29 16:06:12.197][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.198][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:12.200][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.201][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.202][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.203][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.204][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:12.206][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:12.208][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.209][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-29 16:06:12.211][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:12.212][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-29 16:06:12.212][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-29 16:06:12.213][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:12.215][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:12.216][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-29 16:06:12.217][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:12.218][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:12.219][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:12.220][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:12.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:12.223][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:12.224][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:12.224][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:12.224][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-29 16:06:12.225][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:12.226][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:12.227][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:12.228][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:06:12.234][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-29 16:06:12.235][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-29 16:06:12.237][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-29 16:06:12.238][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-29 16:06:12.240][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-29 16:06:12.241][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-29 16:06:12.260][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-06-29 16:06:12.261][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-06-29 16:06:12.265][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-06-29 16:06:12.268][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-06-29 16:06:12.271][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:12.272][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:12.274][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-06-29 16:06:12.275][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:12.276][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:12.277][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-06-29 16:06:12.286][biodb::testThat]
biodb.INFO [2024-06-29 16:06:12.287][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-29 16:06:12.288][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:12.289][biodb::testThat]
biodb.TRACE[2024-06-29 16:06:12.296][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-06-29 16:06:12.299][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:12.303][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:12.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:12.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:12.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:12.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:12.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:12.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:12.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:12.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.376][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:12.388][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:12.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:12.507][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-06-29 16:06:12.510][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.514][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.541][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:12.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:12.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.674][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.691][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.700][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.704][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:12.705][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.709][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:12.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.723][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.725][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.728][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.737][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.763][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-06-29 16:06:12.793][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:12.794][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:12.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:12.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:12.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:12.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:12.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:12.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:12.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:12.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.843][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:12.844][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.846][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.847][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:12.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:12.894][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-06-29 16:06:12.911][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.916][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:12.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.920][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:12.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:12.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:12.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:12.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:13.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:13.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:13.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:13.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:13.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.036][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:13.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:13.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.059][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.067][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:13.068][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.086][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.088][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:13.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:13.096][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:13.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:13.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:13.099][ef$get] fields variable is a list.
biodb.INFO [2024-06-29 16:06:13.112][biodb::testThat]
biodb.INFO [2024-06-29 16:06:13.114][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-29 16:06:13.115][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:13.122][biodb::testThat]
biodb.DEBUG[2024-06-29 16:06:13.125][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-06-29 16:06:13.131][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-29 16:06:13.136][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2024-06-29 16:06:13.138][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2024-06-29 16:06:13.140][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-29 16:06:13.141][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:06:13.142][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:13.143][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:13.144][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:13.145][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-29 16:06:13.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:13.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:13.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:13.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:13.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:13.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:13.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:13.164][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-06-29 16:06:13.186][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:13.188][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:13.189][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2024-06-29 16:06:14.848][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2024-06-29 16:06:16.264][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:16.267][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2024-06-29 16:06:16.280][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2024-06-29 16:06:16.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:16.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:16.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:16.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:16.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:16.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:16.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:16.314][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2024-06-29 16:06:16.336][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:16.338][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:16.351][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2024-06-29 16:06:17.736][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2024-06-29 16:06:19.083][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:19.085][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2024-06-29 16:06:19.092][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2024-06-29 16:06:19.096][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2024-06-29 16:06:19.103][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:19.105][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-06-29 16:06:19.107][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:19.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:19.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:19.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:19.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:19.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:19.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:19.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.154][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:19.156][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.161][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:19.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:19.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:19.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:19.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:19.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:19.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:19.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:19.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:19.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.249][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:19.251][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.256][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:19.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:19.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:19.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:19.317][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-06-29 16:06:19.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:19.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:19.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:19.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:19.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:19.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:19.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:19.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:19.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:19.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:06:19.371][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.372][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-29 16:06:19.373][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:19.374][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.385][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.386][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-29 16:06:19.387][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:19.389][biodb::testThat]
biodb.WARN [2024-06-29 16:06:19.407][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-06-29 16:06:19.424][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-06-29 16:06:19.436][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.438][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-29 16:06:19.439][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:19.440][biodb::testThat]
biodb.TRACE[2024-06-29 16:06:19.467][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:19.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:19.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:19.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:19.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:19.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:19.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:19.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.536][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:19.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:19.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:19.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:19.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:19.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:19.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:19.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:19.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:19.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:19.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:06:19.630][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.632][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-29 16:06:19.633][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:19.635][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.649][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.651][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-29 16:06:19.652][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:19.654][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.682][biodb::testThat]
biodb.INFO [2024-06-29 16:06:19.683][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-29 16:06:19.684][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:19.686][biodb::testThat]
biodb.DEBUG[2024-06-29 16:06:19.691][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-06-29 16:06:21.048][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-06-29 16:06:22.494][biodb::testThat]
biodb.INFO [2024-06-29 16:06:22.496][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-29 16:06:22.498][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:22.499][biodb::testThat]
biodb.INFO [2024-06-29 16:06:22.530][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-29 16:06:22.532][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-06-29 16:06:22.533][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-06-29 16:06:22.534][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-29 16:06:22.535][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:22.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:22.537][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.539][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-29 16:06:22.551][biodb::testContext]
biodb.INFO [2024-06-29 16:06:22.552][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-29 16:06:22.553][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-06-29 16:06:22.554][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-29 16:06:22.555][biodb::testContext]
biodb.INFO [2024-06-29 16:06:22.557][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-29 16:06:22.559][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-29 16:06:22.564][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:22.565][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-29 16:06:22.566][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-29 16:06:22.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.570][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-29 16:06:22.571][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-29 16:06:22.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.575][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-29 16:06:22.576][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-29 16:06:22.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.580][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-29 16:06:22.581][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-29 16:06:22.584][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-29 16:06:22.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.588][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-29 16:06:22.589][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-29 16:06:22.590][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-29 16:06:22.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.594][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-29 16:06:22.596][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-29 16:06:22.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.599][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-29 16:06:22.600][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-29 16:06:22.602][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-29 16:06:22.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.605][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-29 16:06:22.606][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-29 16:06:22.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.610][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-29 16:06:22.611][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-29 16:06:22.613][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-29 16:06:22.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.617][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-29 16:06:22.618][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-29 16:06:22.619][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-29 16:06:22.620][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-29 16:06:22.621][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-29 16:06:22.622][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-29 16:06:22.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.626][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-29 16:06:22.627][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-29 16:06:22.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.631][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-29 16:06:22.632][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-29 16:06:22.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.636][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-29 16:06:22.637][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-29 16:06:22.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.647][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-29 16:06:22.648][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-29 16:06:22.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.652][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-29 16:06:22.653][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-29 16:06:22.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.657][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-29 16:06:22.658][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-29 16:06:22.663][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-29 16:06:22.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.667][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-29 16:06:22.668][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-29 16:06:22.670][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-29 16:06:22.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.674][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-29 16:06:22.676][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.677][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-29 16:06:22.678][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.679][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:22.680][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.682][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.683][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.684][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.685][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-29 16:06:22.686][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:22.687][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.688][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-29 16:06:22.690][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:22.691][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.692][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.693][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:22.693][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:22.693][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:22.693][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-29 16:06:22.693][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-29 16:06:22.694][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:22.695][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:22.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:22.698][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:22.699][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:22.700][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:22.701][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.702][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.703][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:22.705][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:22.706][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.707][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.708][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-29 16:06:22.710][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.711][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-29 16:06:22.712][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.713][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:22.714][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.715][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.716][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.717][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.718][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-29 16:06:22.719][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:22.720][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.722][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-29 16:06:22.723][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:22.724][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.725][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.726][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:22.726][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:22.726][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:22.726][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-29 16:06:22.726][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-29 16:06:22.727][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:22.728][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:22.729][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:22.730][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:22.731][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:22.732][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:22.733][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.734][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.735][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:22.736][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:22.737][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.738][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.739][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-29 16:06:22.741][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.742][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-29 16:06:22.743][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.744][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:22.745][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.746][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.747][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.748][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.749][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-29 16:06:22.750][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:22.751][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.752][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-29 16:06:22.753][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:22.754][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.755][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.756][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.757][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:22.759][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:22.759][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:22.765][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:22.766][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:22.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:22.768][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.769][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.770][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:22.771][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:22.772][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.773][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.774][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-29 16:06:22.776][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.777][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-29 16:06:22.778][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.779][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:22.780][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.781][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.782][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.783][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.785][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-29 16:06:22.786][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:22.787][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.788][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-29 16:06:22.789][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:22.790][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.791][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:22.792][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.793][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:22.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:22.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:22.796][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:22.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:22.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:22.799][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:22.800][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.801][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:22.802][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:22.803][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:22.804][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:22.805][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:22.806][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:22.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:22.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:22.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:22.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:22.938][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-29 16:06:22.944][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-29 16:06:22.947][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-29 16:06:22.950][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-29 16:06:22.953][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-29 16:06:22.954][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-29 16:06:22.958][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-29 16:06:22.960][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-29 16:06:22.962][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-29 16:06:22.964][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-29 16:06:22.966][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-29 16:06:22.968][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-29 16:06:22.971][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-29 16:06:22.973][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-29 16:06:22.975][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-29 16:06:22.977][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-29 16:06:22.979][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-29 16:06:22.982][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-29 16:06:22.984][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-29 16:06:22.986][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-29 16:06:22.987][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-29 16:06:22.989][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-29 16:06:22.991][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-29 16:06:22.992][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-29 16:06:22.994][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-29 16:06:22.996][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-29 16:06:22.997][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-29 16:06:22.999][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-29 16:06:23.001][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-29 16:06:23.003][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-29 16:06:23.005][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-29 16:06:23.007][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-29 16:06:23.008][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-29 16:06:23.010][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-29 16:06:23.012][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-29 16:06:23.014][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-29 16:06:23.015][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-29 16:06:23.017][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-29 16:06:23.018][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-29 16:06:23.020][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-29 16:06:23.022][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-29 16:06:23.024][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-29 16:06:23.025][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-29 16:06:23.027][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-29 16:06:23.028][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-29 16:06:23.030][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-29 16:06:23.031][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-29 16:06:23.033][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-29 16:06:23.035][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-29 16:06:23.036][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-29 16:06:23.038][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-29 16:06:23.040][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-29 16:06:23.041][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-29 16:06:23.043][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-29 16:06:23.045][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-29 16:06:23.047][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-29 16:06:23.049][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-29 16:06:23.056][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-29 16:06:23.059][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-29 16:06:23.060][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-29 16:06:23.062][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-29 16:06:23.063][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-29 16:06:23.065][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-29 16:06:23.067][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-29 16:06:23.069][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-29 16:06:23.070][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-29 16:06:23.072][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-29 16:06:23.074][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-29 16:06:23.077][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-29 16:06:23.079][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-29 16:06:23.081][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-29 16:06:23.082][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-29 16:06:23.084][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-29 16:06:23.085][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-29 16:06:23.086][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-29 16:06:23.088][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-29 16:06:23.090][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-29 16:06:23.093][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-29 16:06:23.094][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-29 16:06:23.096][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-29 16:06:23.098][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-29 16:06:23.100][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-29 16:06:23.101][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-29 16:06:23.103][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-29 16:06:23.105][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-29 16:06:23.106][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:23.107][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.110][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:23.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.242][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-29 16:06:23.244][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-29 16:06:23.246][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.247][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-29 16:06:23.248][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.249][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:23.250][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.251][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.252][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.253][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.254][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-29 16:06:23.256][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:23.257][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.258][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-29 16:06:23.259][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:23.260][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-29 16:06:23.260][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-29 16:06:23.261][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:23.262][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:23.263][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-29 16:06:23.264][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:23.265][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:23.266][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:23.267][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:23.268][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:23.269][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.270][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:23.270][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-29 16:06:23.271][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:23.272][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:23.273][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.274][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:23.275][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-29 16:06:23.277][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.278][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-29 16:06:23.279][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.280][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:23.281][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.282][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.283][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.284][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.285][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:23.286][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:23.288][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.289][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-29 16:06:23.290][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:23.296][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-29 16:06:23.296][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-29 16:06:23.296][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-29 16:06:23.296][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-29 16:06:23.296][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-29 16:06:23.296][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-29 16:06:23.297][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:23.298][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:23.299][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-29 16:06:23.301][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:23.302][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:23.303][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:23.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:23.304][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:23.305][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.307][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:23.307][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:23.308][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:23.309][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:23.309][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.311][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:23.312][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-29 16:06:23.314][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:23.315][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-29 16:06:23.316][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.317][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:23.318][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.319][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.320][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.321][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.322][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:23.323][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:23.324][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.325][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-29 16:06:23.326][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.327][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:23.329][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:23.330][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:23.330][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:23.330][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:23.331][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-29 16:06:23.332][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:23.333][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:23.334][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:23.335][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:23.336][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:23.337][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.338][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:23.338][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:23.338][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-29 16:06:23.339][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:23.340][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:23.341][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.342][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:06:23.343][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-29 16:06:23.345][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.346][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-29 16:06:23.347][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.348][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:23.349][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.350][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.351][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.352][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.353][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:23.355][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:23.356][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.358][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-29 16:06:23.359][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:23.360][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-29 16:06:23.360][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-29 16:06:23.361][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:23.362][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:23.363][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-29 16:06:23.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:23.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:23.366][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:23.367][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:23.368][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:23.369][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:23.370][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:23.370][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:23.370][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-29 16:06:23.371][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:23.372][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:23.373][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:23.374][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:06:23.375][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-29 16:06:23.377][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-29 16:06:23.378][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-29 16:06:23.380][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-29 16:06:23.381][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-29 16:06:23.383][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-29 16:06:23.390][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-06-29 16:06:23.391][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-06-29 16:06:23.392][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-06-29 16:06:23.394][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-06-29 16:06:23.395][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.396][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.398][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-06-29 16:06:23.399][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.405][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.461][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-06-29 16:06:23.466][biodb::testThat]
biodb.INFO [2024-06-29 16:06:23.467][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-29 16:06:23.468][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:23.469][biodb::testThat]
biodb.TRACE[2024-06-29 16:06:23.479][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-06-29 16:06:23.480][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:23.483][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:23.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:23.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:23.506][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.523][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:23.524][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:23.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.526][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.527][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:23.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:23.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.532][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:23.533][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:23.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.536][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:23.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:23.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.540][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:23.542][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:23.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.545][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:23.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.549][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:23.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:23.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.558][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:23.559][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:23.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.564][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:23.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:23.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:23.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:23.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:23.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:23.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:23.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:23.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:23.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:23.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:23.658][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-06-29 16:06:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:23.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:23.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:23.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:23.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:23.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:23.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:23.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:23.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:23.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:23.684][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-29 16:06:23.708][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-06-29 16:06:23.709][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-06-29 16:06:23.710][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-06-29 16:06:23.890][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-29 16:06:23.891][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.892][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-29 16:06:23.902][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.903][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.904][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-29 16:06:23.905][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.906][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-29 16:06:23.908][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.909][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-29 16:06:23.919][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-06-29 16:06:23.921][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-06-29 16:06:23.922][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:06:23.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-06-29 16:06:23.927][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-29 16:06:23.929][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:06:23.930][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:23.931][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:23.932][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:23.933][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-29 16:06:23.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:23.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:23.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:23.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:23.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:23.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:23.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:23.948][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2024-06-29 16:06:23.951][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:23.952][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:23.953][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2024-06-29 16:06:25.308][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2024-06-29 16:06:26.610][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:26.613][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2024-06-29 16:06:26.620][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2024-06-29 16:06:26.625][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2024-06-29 16:06:26.629][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:26.631][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:26.633][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:26.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:26.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:26.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:26.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:26.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:26.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:26.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:26.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.670][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:26.671][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:26.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:26.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:26.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:26.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:26.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:26.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:26.728][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-06-29 16:06:26.729][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:26.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:26.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.734][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:26.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:26.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:26.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.744][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:26.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:26.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:26.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:26.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:26.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:26.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:26.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:26.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:26.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.861][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.864][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:26.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:26.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.880][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.894][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:26.896][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:26.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.899][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:26.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:26.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.913][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:26.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:26.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.918][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:26.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:26.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.928][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:26.929][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:26.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.932][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:26.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:26.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.949][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.954][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.964][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.966][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:26.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:26.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:26.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.022][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.023][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.041][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:27.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:27.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:27.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:27.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.053][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:27.055][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:27.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.070][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:27.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:27.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:27.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.083][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:27.084][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:27.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.086][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.087][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:27.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:27.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.104][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.112][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:27.114][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.115][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.117][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.132][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.134][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.142][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:27.143][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:27.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.151][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.160][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:27.161][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:27.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.171][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:27.172][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:27.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.174][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.182][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:27.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:27.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.192][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.193][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.203][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:27.205][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:27.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.224][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-06-29 16:06:27.226][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:27.227][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:27.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:27.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:27.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:27.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:27.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:27.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:27.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:27.253][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.262][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:27.264][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:27.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.271][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:27.273][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:27.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:27.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.280][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:27.282][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:27.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.285][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.289][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:27.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:27.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.292][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.298][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:27.299][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:27.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.301][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:27.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:27.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:27.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:27.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:27.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:27.357][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-06-29 16:06:27.359][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:27.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:27.380][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-29 16:06:27.381][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-06-29 16:06:27.423][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:06:27.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-06-29 16:06:27.437][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-29 16:06:27.438][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:06:27.439][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:27.440][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:27.441][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:27.443][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-29 16:06:27.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:27.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:27.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:27.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:27.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:27.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:27.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:27.476][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-06-29 16:06:27.480][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:27.482][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:27.484][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-06-29 16:06:28.831][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-06-29 16:06:30.168][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:30.171][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-06-29 16:06:30.176][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-06-29 16:06:30.179][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-06-29 16:06:30.181][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:30.183][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:30.184][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:30.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:30.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:30.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:30.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:30.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:30.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:30.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.253][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:30.255][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:30.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:30.319][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-06-29 16:06:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.340][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:30.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:30.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.484][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.502][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.507][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.516][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:30.517][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.547][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:30.548][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.550][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.569][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.579][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.580][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.583][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.621][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.622][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.641][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:30.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:30.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.655][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:30.656][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:30.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:30.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:30.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:30.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:30.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:30.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.689][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:30.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:30.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.693][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:30.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:30.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.707][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:30.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.711][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.716][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.720][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:30.721][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.723][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:30.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.745][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.746][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.757][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.758][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.760][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.767][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.777][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:30.779][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:30.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.791][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.792][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.800][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:30.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:30.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.809][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.810][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.818][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.819][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.841][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-06-29 16:06:30.843][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:30.844][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:30.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:30.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:30.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:30.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:30.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:30.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:30.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:30.875][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.885][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:30.886][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:30.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.890][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.894][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:30.895][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.903][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:30.904][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:30.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:30.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.913][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:30.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:30.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.918][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:30.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.922][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.923][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.925][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.928][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:30.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:30.980][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-06-29 16:06:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:30.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:30.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:30.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:30.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:31.004][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-29 16:06:31.005][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-06-29 16:06:31.006][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:06:31.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-06-29 16:06:31.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:06:31.011][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-06-29 16:06:31.013][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:31.014][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:31.015][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:31.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:31.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:31.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:31.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:31.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:31.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:31.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:31.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.052][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:31.053][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:31.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:31.109][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-06-29 16:06:31.110][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.118][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:31.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:31.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.355][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.375][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.384][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.388][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:31.389][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:31.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.418][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:31.419][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.422][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:31.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.447][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.448][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.480][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.481][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.483][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.511][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:31.512][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:31.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.532][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:31.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:31.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:31.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.549][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:31.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:31.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.582][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.597][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:31.600][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.604][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:31.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.620][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.621][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.636][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.637][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.646][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.657][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:31.659][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:31.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.682][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.684][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.700][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:31.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:31.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.711][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.713][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.723][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.724][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.744][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-06-29 16:06:31.745][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:31.747][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:31.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:31.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:31.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:31.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:31.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:31.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:31.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:31.802][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.813][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:31.814][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:31.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.818][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:31.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:31.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.823][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:31.824][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.827][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.835][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:31.837][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.846][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:31.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:31.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.860][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.862][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.864][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:31.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:31.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:31.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:31.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:31.924][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-06-29 16:06:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:31.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:31.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:31.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:31.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:31.949][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-29 16:06:31.950][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-06-29 16:06:31.951][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:06:31.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-06-29 16:06:31.955][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-29 16:06:31.956][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:06:31.957][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:31.958][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:31.959][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:31.961][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-29 16:06:31.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:31.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:31.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:31.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:31.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:31.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:31.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:31.979][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-06-29 16:06:31.984][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:31.985][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:31.987][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-06-29 16:06:33.375][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-06-29 16:06:34.811][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:34.813][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-06-29 16:06:34.820][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-06-29 16:06:34.825][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-06-29 16:06:34.829][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:34.831][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:34.833][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:34.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:34.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:34.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:34.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:34.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:34.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:34.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.864][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:34.865][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:34.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:34.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:34.916][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-06-29 16:06:34.917][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:34.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.921][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:34.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:34.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.925][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:34.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:34.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.930][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:34.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:34.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:34.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.942][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:34.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:34.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:34.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.036][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.052][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:35.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.061][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.065][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:35.066][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.083][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:35.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.087][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.099][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:35.101][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.104][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:35.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.119][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.128][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.132][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.133][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.136][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.162][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.163][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.179][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:35.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:35.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:35.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.192][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:35.193][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:35.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:35.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:35.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:35.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:35.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:35.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:35.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.221][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:35.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:35.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:35.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:35.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.243][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.252][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:35.253][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:35.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.270][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.272][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.282][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.283][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.285][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.301][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:35.303][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:35.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.311][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.312][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.320][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:35.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:35.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.329][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.331][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.333][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.339][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.340][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.371][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-06-29 16:06:35.373][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:35.374][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:35.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:35.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:35.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:35.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:35.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:35.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:35.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:35.420][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.431][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:35.432][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:35.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.442][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:35.443][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.456][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:35.457][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.459][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.464][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:35.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.468][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:35.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:35.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:35.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.479][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.480][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.487][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:35.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:35.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:35.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:35.548][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-06-29 16:06:35.551][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:35.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:35.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:35.576][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-29 16:06:35.577][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-06-29 16:06:35.578][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:06:35.580][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-06-29 16:06:35.582][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-29 16:06:35.583][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:06:35.584][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:35.585][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:35.586][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:35.587][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-29 16:06:35.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:35.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:35.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:35.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:35.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:35.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:35.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:35.605][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-06-29 16:06:35.608][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:35.609][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:35.611][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-06-29 16:06:36.943][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-06-29 16:06:38.254][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:38.257][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-06-29 16:06:38.423][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-06-29 16:06:38.426][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-06-29 16:06:38.430][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:38.431][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:38.432][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:38.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:38.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:38.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:38.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:38.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:38.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:38.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.468][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:38.469][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.473][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:38.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:38.520][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-06-29 16:06:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.538][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:38.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:38.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:38.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:38.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:38.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:38.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:38.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.635][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.653][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:38.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.662][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.666][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:38.667][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.669][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.670][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:38.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.689][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.694][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.698][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:38.699][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.702][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:38.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.728][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.729][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.731][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.732][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:38.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.764][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.765][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:38.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.793][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:38.794][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:38.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.797][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:38.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:38.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:38.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:38.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.821][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:38.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:38.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.825][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:38.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:38.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.838][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:38.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.850][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:38.851][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.867][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.868][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:38.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.876][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.877][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:38.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.885][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:38.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:38.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.894][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:38.895][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:38.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:38.904][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.905][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:38.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:38.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.021][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:39.022][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:39.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.039][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.041][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.068][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:39.069][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:39.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.100][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-06-29 16:06:39.103][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:39.104][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:39.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:39.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:39.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:39.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:39.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:39.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:39.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:39.139][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.151][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:39.153][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:39.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:39.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.165][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:39.166][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:39.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.168][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.175][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:39.176][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:39.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:39.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:39.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.189][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:39.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:39.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:39.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.200][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:39.201][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:39.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:39.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:39.266][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-06-29 16:06:39.269][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:39.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:39.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:39.290][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-29 16:06:39.291][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-06-29 16:06:39.292][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:06:39.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-06-29 16:06:39.295][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-29 16:06:39.296][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:06:39.297][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:39.299][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:39.300][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:39.301][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-29 16:06:39.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:39.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:39.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:39.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:39.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:39.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:39.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:39.317][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-06-29 16:06:39.320][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:39.321][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:39.323][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-06-29 16:06:40.705][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-06-29 16:06:42.089][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:42.092][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-06-29 16:06:42.098][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-06-29 16:06:42.101][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-06-29 16:06:42.104][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:42.105][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:42.107][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:42.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:42.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:42.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:42.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:42.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:42.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:42.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:42.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.148][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:42.149][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:42.199][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-06-29 16:06:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.209][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:42.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.315][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.332][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:42.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.337][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.345][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:42.346][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.348][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.349][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:42.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.368][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.373][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.377][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:42.378][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:42.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.394][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.406][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.407][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.435][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.436][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.438][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:42.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.456][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:42.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.464][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:42.465][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:42.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.468][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:42.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:42.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:42.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:42.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:42.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.496][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:42.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:42.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:42.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.517][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.521][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.525][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:42.526][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.537][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:42.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.549][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.550][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.558][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.559][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.567][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.576][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:42.577][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:42.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.585][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.586][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.594][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:42.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:42.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.603][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.604][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.615][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.616][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.632][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-06-29 16:06:42.633][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:42.634][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:42.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:42.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:42.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:42.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:42.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:42.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:42.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:42.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.666][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:42.668][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:42.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.676][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:42.677][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.685][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:42.686][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:42.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.694][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:42.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:42.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.703][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.704][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:42.760][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-06-29 16:06:42.763][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:42.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:42.783][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-29 16:06:42.785][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-06-29 16:06:42.786][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:06:42.787][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-06-29 16:06:42.789][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-29 16:06:42.790][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:06:42.792][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:42.793][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:42.794][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:42.795][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-29 16:06:42.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:42.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:42.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:42.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:42.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:42.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:42.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:42.816][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-06-29 16:06:42.819][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:42.821][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:42.824][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-06-29 16:06:44.258][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-06-29 16:06:45.633][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:45.636][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-06-29 16:06:45.640][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-06-29 16:06:45.643][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-06-29 16:06:45.646][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:45.647][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:45.648][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-29 16:06:45.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:45.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:45.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:45.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:45.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:45.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:45.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:45.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.683][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:45.684][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.687][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:45.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:45.734][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-06-29 16:06:45.735][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:45.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.854][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:45.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:45.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:45.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:45.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:45.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:45.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:45.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:45.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:45.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:45.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:45.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.968][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:45.995][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:45.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:45.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.000][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.005][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:46.007][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.010][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.055][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.077][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.085][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.091][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:46.093][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:46.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.125][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.135][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.141][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.142][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.144][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.145][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.187][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.189][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.218][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.226][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.227][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:46.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:46.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:46.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:46.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:46.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:46.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.256][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:46.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:46.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:46.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.274][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:46.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.288][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:46.289][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-29 16:06:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.307][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.308][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.318][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.320][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.329][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.339][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.340][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.349][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.350][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.358][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:46.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:46.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.362][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.370][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.371][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.373][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.379][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.380][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.389][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-06-29 16:06:46.391][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:46.392][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:46.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:46.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:46.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:46.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:46.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:46.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:46.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:46.407][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.419][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.420][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.434][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:46.435][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:46.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.438][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:46.440][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.447][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:46.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.451][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.452][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:46.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.454][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:46.497][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-06-29 16:06:46.500][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:46.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:46.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.521][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:46.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:46.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.525][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.613][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.632][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:46.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.641][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.646][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:46.647][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.649][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.673][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.678][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.679][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.682][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:46.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:46.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.705][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:46.707][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:46.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:46.715][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.716][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:46.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:46.718][ef$get] fields variable is a list.
biodb.INFO [2024-06-29 16:06:46.734][biodb::testThat]
biodb.INFO [2024-06-29 16:06:46.736][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-29 16:06:46.738][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:46.739][biodb::testThat]
biodb.DEBUG[2024-06-29 16:06:46.743][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-06-29 16:06:46.745][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-06-29 16:06:46.747][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.INFO [2024-06-29 16:06:46.749][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8" for "ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8".
biodb.TRACE[2024-06-29 16:06:46.752][cch$loadFileContent] file.exist = [8]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-29 16:06:46.754][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:06:46.755][conn$getEntryContent] 0 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:46.757][conn$getEntryContent] 8 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:46.758][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:46.760][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:06:46.762][private$retrieveContents] Get entry content(s) for 8 id(s)...
biodb.DEBUG[2024-06-29 16:06:46.769][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.DEBUG[2024-06-29 16:06:46.771][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:46.773][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:46.774][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.TRACE[2024-06-29 16:06:46.909][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml does not exist.
biodb.TRACE[2024-06-29 16:06:46.911][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:06:46.912][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:06:46.913][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml).
biodb.TRACE[2024-06-29 16:06:47.964][private$doSaveContentToFile] Saving to cache [8]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml"
biodb.DEBUG[2024-06-29 16:06:48.030][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:48.032][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-06-29 16:06:48.033][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-06-29 16:06:48.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:48.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:48.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:48.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:48.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:48.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:48.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:48.057][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.060][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.066][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.067][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.075][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.076][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.079][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.084][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.085][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.094][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.103][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.104][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:48.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:48.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:48.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:48.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:48.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:48.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:48.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:48.174][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.184][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.185][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.193][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.194][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.199][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.203][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.204][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.209][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.213][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.218][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.222][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.224][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:48.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:48.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:48.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:48.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:48.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:48.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:48.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:48.299][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.309][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.310][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.319][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.320][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.328][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.329][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.333][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.337][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.346][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.348][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:48.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:48.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:48.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:48.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:48.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:48.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:48.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:48.428][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.439][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.440][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.451][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.452][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.454][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.460][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.461][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.470][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.477][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.481][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.482][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.484][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.487][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:48.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:48.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:48.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:48.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:48.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:48.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:48.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:48.574][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.584][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.585][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.594][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.595][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.604][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.605][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.613][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.623][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.624][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.630][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:48.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:48.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:48.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:48.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:48.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:48.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:48.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:48.699][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.710][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.711][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.714][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.715][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.721][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.722][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.731][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.732][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.736][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.741][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.751][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.752][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.754][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.757][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:48.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:48.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:48.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:48.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:48.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:48.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:48.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:48.830][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.842][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.843][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.857][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.858][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.862][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.867][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.868][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.871][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.879][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.884][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.893][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.895][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:48.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:48.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:48.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:48.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:48.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:48.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:48.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:48.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:48.962][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.971][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.972][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-29 16:06:48.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-29 16:06:48.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.980][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-29 16:06:48.981][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-29 16:06:48.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.984][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.986][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.989][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-29 16:06:48.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-29 16:06:48.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.993][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-29 16:06:48.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:48.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:48.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:48.998][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:48.999][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-29 16:06:49.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:49.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:49.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-29 16:06:49.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:49.140][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-06-29 16:06:49.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:06:49.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:06:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:06:49.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:06:49.357][biodb::testThat]
biodb.INFO [2024-06-29 16:06:49.358][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-29 16:06:49.359][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:49.360][biodb::testThat]
biodb.TRACE[2024-06-29 16:06:49.363][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:49.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:49.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.366][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:49.368][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-06-29 16:06:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:49.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:49.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:49.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:49.402][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-06-29 16:06:49.602][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-06-29 16:06:49.605][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:49.607][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:49.608][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2024-06-29 16:06:49.723][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2024-06-29 16:06:49.724][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:06:49.726][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:06:49.727][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2024-06-29 16:06:49.840][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:06:49.843][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2024-06-29 16:06:49.848][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2024-06-29 16:06:49.851][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-06-29 16:06:49.873][biodb::testThat]
biodb.INFO [2024-06-29 16:06:49.875][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-29 16:06:49.876][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:49.877][biodb::testThat]
biodb.TRACE[2024-06-29 16:06:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:49.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:49.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:49.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:49.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-06-29 16:06:49.930][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:06:49.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-06-29 16:06:49.933][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:06:49.952][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-06-29 16:06:49.977][biodb::testThat]
biodb.INFO [2024-06-29 16:06:49.978][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-29 16:06:49.979][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:49.980][biodb::testThat]
biodb.TRACE[2024-06-29 16:06:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:49.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:49.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:49.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:49.999][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:50.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:50.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:50.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:50.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:50.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:50.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:50.015][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-06-29 16:06:50.016][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.021][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:50.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:50.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:50.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:50.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:50.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.047][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.051][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:50.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:50.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:50.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.063][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:50.067][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:50.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:50.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:50.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:06:50.079][biodb::testThat]
biodb.INFO [2024-06-29 16:06:50.080][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-29 16:06:50.081][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:50.082][biodb::testThat]
biodb.INFO [2024-06-29 16:06:50.095][biodb::testThat]
biodb.INFO [2024-06-29 16:06:50.096][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-29 16:06:50.097][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:50.098][biodb::testThat]
biodb.INFO [2024-06-29 16:06:50.110][biodb::testThat]
biodb.INFO [2024-06-29 16:06:50.111][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-29 16:06:50.112][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:50.113][biodb::testThat]
biodb.DEBUG[2024-06-29 16:06:50.118][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-06-29 16:06:52.960][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-06-29 16:06:56.115][biodb::testThat]
biodb.INFO [2024-06-29 16:06:56.117][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-29 16:06:56.118][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:56.119][biodb::testThat]
biodb.INFO [2024-06-29 16:06:56.129][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-29 16:06:56.130][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-06-29 16:06:56.131][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-06-29 16:06:56.133][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-06-29 16:06:56.140][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-06-29 16:06:56.141][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-29 16:06:56.142][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.144][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.146][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-29 16:06:56.152][biodb::testContext]
biodb.INFO [2024-06-29 16:06:56.153][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-29 16:06:56.155][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-06-29 16:06:56.156][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-29 16:06:56.157][biodb::testContext]
biodb.INFO [2024-06-29 16:06:56.160][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-29 16:06:56.162][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-29 16:06:56.167][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:56.168][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-29 16:06:56.169][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-29 16:06:56.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.173][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-29 16:06:56.174][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-29 16:06:56.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.179][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-29 16:06:56.180][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-29 16:06:56.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.184][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-29 16:06:56.185][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-29 16:06:56.186][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-29 16:06:56.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.190][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-29 16:06:56.191][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-29 16:06:56.192][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-29 16:06:56.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.196][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-29 16:06:56.197][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-29 16:06:56.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.201][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-29 16:06:56.202][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-29 16:06:56.203][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-29 16:06:56.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.207][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-29 16:06:56.208][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-29 16:06:56.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.212][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-29 16:06:56.213][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-29 16:06:56.214][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-29 16:06:56.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.218][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-29 16:06:56.219][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-29 16:06:56.220][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-29 16:06:56.221][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-29 16:06:56.222][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-29 16:06:56.224][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-29 16:06:56.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.227][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-29 16:06:56.229][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-29 16:06:56.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.233][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-29 16:06:56.234][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-29 16:06:56.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.238][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-29 16:06:56.239][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-29 16:06:56.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.243][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-29 16:06:56.245][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-29 16:06:56.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.259][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-29 16:06:56.260][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-29 16:06:56.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.264][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-29 16:06:56.265][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-29 16:06:56.271][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-29 16:06:56.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.275][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-29 16:06:56.276][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-29 16:06:56.277][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-29 16:06:56.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.281][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-29 16:06:56.283][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.284][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-29 16:06:56.285][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.286][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:56.287][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.288][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.289][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.290][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.291][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-29 16:06:56.292][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:56.293][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.295][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-29 16:06:56.296][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:56.297][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.298][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.299][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:56.299][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:56.299][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:56.299][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-29 16:06:56.299][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-29 16:06:56.300][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:56.301][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.302][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.303][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:56.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.305][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.306][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.307][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.308][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:56.309][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:56.310][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.311][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.312][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-29 16:06:56.314][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.315][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-29 16:06:56.316][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.317][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:56.318][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.319][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.320][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.321][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.322][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-29 16:06:56.323][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:56.324][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.325][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-29 16:06:56.326][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:56.327][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.328][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.330][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:56.330][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:56.330][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:56.330][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-29 16:06:56.330][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-29 16:06:56.331][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:56.332][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.333][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.334][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:56.335][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.336][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.337][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.338][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.339][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:56.340][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:56.341][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.342][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.343][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-29 16:06:56.344][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.345][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-29 16:06:56.347][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.348][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:56.349][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.350][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.351][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.352][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.353][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-29 16:06:56.354][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:56.355][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.356][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-29 16:06:56.357][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:56.358][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.359][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.360][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.361][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:56.362][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.364][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:56.365][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.366][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.367][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.368][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:56.369][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:56.370][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.371][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.372][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-29 16:06:56.374][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.375][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-29 16:06:56.376][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.377][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:56.378][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.379][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.380][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.381][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.382][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-29 16:06:56.383][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:56.384][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.385][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-29 16:06:56.386][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:56.387][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.388][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.389][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.390][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:06:56.391][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.393][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:56.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.397][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.398][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:56.399][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:56.400][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.401][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.402][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:56.403][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.485][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-29 16:06:56.486][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-29 16:06:56.488][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-29 16:06:56.489][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-29 16:06:56.490][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-29 16:06:56.492][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-29 16:06:56.493][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-29 16:06:56.494][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-29 16:06:56.496][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-29 16:06:56.497][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-29 16:06:56.498][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-29 16:06:56.500][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-29 16:06:56.501][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-29 16:06:56.502][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-29 16:06:56.504][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-29 16:06:56.505][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-29 16:06:56.506][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-29 16:06:56.508][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-29 16:06:56.509][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-29 16:06:56.510][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-29 16:06:56.512][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-29 16:06:56.513][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-29 16:06:56.515][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-29 16:06:56.516][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-29 16:06:56.517][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-29 16:06:56.519][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-29 16:06:56.520][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-29 16:06:56.521][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-29 16:06:56.523][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-29 16:06:56.524][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-29 16:06:56.525][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-29 16:06:56.527][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-29 16:06:56.528][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-29 16:06:56.529][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-29 16:06:56.531][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-29 16:06:56.532][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-29 16:06:56.534][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-29 16:06:56.535][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-29 16:06:56.537][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-29 16:06:56.538][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-29 16:06:56.540][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-29 16:06:56.541][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-29 16:06:56.543][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-29 16:06:56.544][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-29 16:06:56.546][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-29 16:06:56.547][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-29 16:06:56.549][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-29 16:06:56.551][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-29 16:06:56.552][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-29 16:06:56.553][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-29 16:06:56.555][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-29 16:06:56.556][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-29 16:06:56.558][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-29 16:06:56.559][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-29 16:06:56.560][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-29 16:06:56.562][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-29 16:06:56.563][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-29 16:06:56.564][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-29 16:06:56.566][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-29 16:06:56.567][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-29 16:06:56.569][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-29 16:06:56.570][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-29 16:06:56.571][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-29 16:06:56.573][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-29 16:06:56.574][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-29 16:06:56.575][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-29 16:06:56.577][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-29 16:06:56.578][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-29 16:06:56.579][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-29 16:06:56.581][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-29 16:06:56.582][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-29 16:06:56.583][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-29 16:06:56.585][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-29 16:06:56.586][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-29 16:06:56.587][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-29 16:06:56.589][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-29 16:06:56.590][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-29 16:06:56.592][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-29 16:06:56.593][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-29 16:06:56.594][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-29 16:06:56.596][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-29 16:06:56.597][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-29 16:06:56.599][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-29 16:06:56.600][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-29 16:06:56.602][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-29 16:06:56.603][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:06:56.604][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.606][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:06:56.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:06:56.724][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-29 16:06:56.726][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-29 16:06:56.728][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.729][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-29 16:06:56.730][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.731][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:56.732][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.733][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.734][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.735][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.736][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-29 16:06:56.737][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:56.738][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.739][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-29 16:06:56.740][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:56.741][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-29 16:06:56.741][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-29 16:06:56.742][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.743][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.744][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-29 16:06:56.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.747][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:56.748][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.749][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.750][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.751][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:06:56.751][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-29 16:06:56.752][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:56.753][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:56.754][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.755][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.756][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-29 16:06:56.758][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.759][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-29 16:06:56.760][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.761][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:56.762][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.763][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.764][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.765][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.766][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:56.767][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:56.768][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.769][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-29 16:06:56.770][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:56.771][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-29 16:06:56.771][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-29 16:06:56.771][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-29 16:06:56.771][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-29 16:06:56.771][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-29 16:06:56.771][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-29 16:06:56.772][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.773][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:56.774][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-29 16:06:56.775][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.777][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:56.778][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.779][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.780][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.781][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:56.781][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:56.782][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:56.783][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:56.784][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.785][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.786][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-29 16:06:56.788][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.789][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-29 16:06:56.790][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.791][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:56.792][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.793][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.794][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.795][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.796][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:56.797][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:56.798][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.799][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-29 16:06:56.800][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.801][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:06:56.802][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.803][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:06:56.803][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:06:56.803][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:06:56.804][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-29 16:06:56.805][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.806][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.807][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:56.808][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.809][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.810][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.811][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:56.811][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:56.811][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-29 16:06:56.812][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:56.813][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:56.814][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.815][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:06:56.816][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-29 16:06:56.818][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.819][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-29 16:06:56.820][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.821][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:06:56.822][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.823][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.824][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.825][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.826][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:06:56.827][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:06:56.828][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.829][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-29 16:06:56.830][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:06:56.831][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-29 16:06:56.831][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-29 16:06:56.832][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:06:56.833][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:06:56.834][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-29 16:06:56.835][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.836][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.837][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:06:56.838][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:06:56.839][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:06:56.840][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:06:56.841][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:56.841][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:06:56.841][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-29 16:06:56.842][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:06:56.843][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:06:56.844][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:06:56.845][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:06:56.846][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-29 16:06:56.848][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-29 16:06:56.849][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-29 16:06:56.851][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-29 16:06:56.852][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-29 16:06:56.854][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-29 16:06:56.860][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-29 16:06:56.861][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-06-29 16:06:56.862][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-29 16:06:56.864][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-06-29 16:06:56.865][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-29 16:06:56.866][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-29 16:06:56.868][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-06-29 16:06:56.869][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-29 16:06:56.870][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-29 16:06:56.871][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:06:56.876][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-06-29 16:06:56.882][biodb::testThat]
biodb.INFO [2024-06-29 16:06:56.883][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-29 16:06:56.884][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:56.885][biodb::testThat]
biodb.TRACE[2024-06-29 16:06:56.888][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-06-29 16:06:56.890][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:56.892][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:06:56.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:56.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:56.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:56.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:56.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:56.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:56.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:56.912][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:56.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:56.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:56.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.923][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:56.924][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:56.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:56.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:56.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.933][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:56.934][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:56.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:56.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:56.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.942][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:56.943][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:56.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:56.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:56.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.950][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:56.952][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:56.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:56.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:56.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.959][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:56.960][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:56.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:56.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:56.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.968][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:56.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:56.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.973][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:56.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:56.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:56.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:56.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:56.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:56.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:56.989][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:56.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:56.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:56.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.002][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.003][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.010][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:57.011][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:57.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.019][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:57.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.027][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.028][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.035][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.036][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:06:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:06:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:06:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.080][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:06:57.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:06:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:57.150][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-06-29 16:06:57.153][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:57.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:57.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.157][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:57.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:57.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.175][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:57.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:57.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.180][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:57.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:57.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:57.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.356][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.383][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.408][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:57.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.412][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:57.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.459][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:57.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:57.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:57.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.489][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:57.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:57.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.492][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:57.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.516][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:57.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:57.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.520][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:57.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.524][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:57.525][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:57.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.528][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:57.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:57.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.553][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.554][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.581][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.582][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.610][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.611][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.641][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.643][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.673][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.674][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.701][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.703][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.730][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.731][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:57.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:57.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:57.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:57.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:57.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.758][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:57.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:57.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.820][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:57.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:57.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.823][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:57.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:57.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.836][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:57.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:57.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.846][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.847][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:57.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.857][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.858][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:57.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.869][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.870][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:57.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.872][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.878][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.879][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:57.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.887][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.889][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:57.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.897][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:57.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:57.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:57.913][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:57.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:57.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.932][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:57.934][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:57.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.943][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:57.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.946][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.954][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.956][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:57.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.965][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:57.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:57.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.974][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.975][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:57.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:57.987][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.989][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:57.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:57.991][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.001][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-06-29 16:06:58.003][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:06:58.004][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:06:58.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:58.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:58.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:58.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:58.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:58.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:58.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:58.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.032][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.033][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.035][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.041][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.042][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.052][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.053][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.061][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.062][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.070][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.071][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.073][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.079][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:58.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.082][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:58.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.088][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:58.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:58.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:58.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:58.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:58.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:58.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:58.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.115][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:58.116][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:58.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.118][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.119][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.124][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:58.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.133][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.134][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.142][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.143][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.151][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:06:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:06:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.179][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:06:58.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.192][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:06:58.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.207][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:06:58.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:58.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:58.271][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-06-29 16:06:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:06:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:06:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:06:58.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.287][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:58.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:58.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:06:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:06:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:06:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.300][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:06:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.398][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.401][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.428][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:58.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:58.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:58.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:58.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:58.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:58.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.488][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:58.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:58.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:58.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:58.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:58.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.509][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:58.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:58.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.513][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.517][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:58.518][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:58.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.546][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.547][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:58.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.575][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.576][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:58.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:58.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:58.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:58.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:58.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.669][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.670][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.672][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.700][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.701][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.756][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.757][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.796][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.797][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.799][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.835][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.837][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:58.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:58.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:58.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:58.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:58.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:58.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.883][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:58.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:58.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:58.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.913][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:58.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:58.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.929][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.930][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:58.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.952][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.955][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:58.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.974][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.975][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:58.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:58.993][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.994][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:58.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:58.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.003][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.004][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.012][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:59.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:59.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:59.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:59.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.040][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:59.041][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:59.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.050][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:59.051][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:59.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.059][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:59.060][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:59.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.070][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:59.072][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:59.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.080][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:59.082][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:59.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.090][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:59.091][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:59.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.093][ef$get] fields variable is a list.
biodb.INFO [2024-06-29 16:06:59.104][biodb::testThat]
biodb.INFO [2024-06-29 16:06:59.105][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-29 16:06:59.106][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:06:59.107][biodb::testThat]
biodb.DEBUG[2024-06-29 16:06:59.110][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-06-29 16:06:59.111][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-29 16:06:59.115][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-06-29 16:06:59.116][cch$loadFileContent] file.exist = [2]: "FALSE, TRUE".
biodb.TRACE[2024-06-29 16:06:59.127][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-06-29 16:06:59.129][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:06:59.130][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:06:59.131][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:06:59.132][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:06:59.134][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-29 16:06:59.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2/XML".
biodb.DEBUG[2024-06-29 16:06:59.139][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:06:59.141][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:06:59.142][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2/XML".
biodb.TRACE[2024-06-29 16:06:59.493][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2/XML).
biodb.TRACE[2024-06-29 16:06:59.637][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml"
biodb.DEBUG[2024-06-29 16:06:59.640][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:06:59.641][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-29 16:06:59.642][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:06:59.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:59.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:59.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:59.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:59.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:59.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:59.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:59.659][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:59.660][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:59.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.668][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.669][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.676][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.677][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.685][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.686][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.695][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.696][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.704][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.705][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.712][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:59.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:59.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.717][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:59.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:59.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.721][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:59.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:59.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.724][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.730][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:59.731][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:59.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:59.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.747][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:59.748][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:59.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.763][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:59.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:59.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.766][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:06:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:06:59.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.772][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:59.773][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:59.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:59.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:06:59.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.780][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:59.781][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:59.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:06:59.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:06:59.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.801][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:06:59.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:06:59.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:06:59.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:06:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:06:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:06:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:59.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:59.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:59.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:59.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:59.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:06:59.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:59.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:59.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:59.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:59.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:59.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:59.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:06:59.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:06:59.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:06:59.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:06:59.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:06:59.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:06:59.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:06:59.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:06:59.899][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:59.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:59.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:06:59.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:06:59.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.911][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.912][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:06:59.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.920][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.921][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:06:59.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.929][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.931][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.933][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:06:59.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.939][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.940][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:06:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.948][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.949][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.951][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:06:59.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.957][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:59.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:59.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.961][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:06:59.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:06:59.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.966][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:59.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:59.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.969][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:06:59.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:06:59.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:59.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:59.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:06:59.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:06:59.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.984][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:06:59.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.993][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:59.994][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:59.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:06:59.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:06:59.997][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:06:59.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:06:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.002][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:00.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:00.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:00.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:00.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.011][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:00.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:00.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:00.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:00.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.022][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:00.023][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:00.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:00.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:00.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.031][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:00.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:00.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:00.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:00.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:00.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:00.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.045][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:00.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:00.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:00.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:00.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:00.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.058][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:00.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:00.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:00.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:00.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:00.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.071][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:00.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:00.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:00.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:00.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:00.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.085][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:00.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:00.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:00.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:00.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:00.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:00.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:00.166][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-06-29 16:07:00.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:07:00.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:07:00.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:07:00.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:07:00.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:07:00.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:07:00.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:07:00.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:07:00.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:07:00.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:07:00.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:07:00.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:07:00.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:00.215][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.216][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-29 16:07:00.217][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:00.218][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:00.224][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:00.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:00.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.229][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:00.231][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-06-29 16:07:00.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:00.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:00.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:00.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:00.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:00.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:00.334][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-06-29 16:07:00.341][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-29 16:07:00.347][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:00.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-29 16:07:00.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:00.369][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-06-29 16:07:00.373][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-06-29 16:07:00.417][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:00.418][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:00.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:00.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:00.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.424][ef$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:00.431][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.432][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-29 16:07:00.433][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:00.434][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:00.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:00.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:00.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:00.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:00.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:00.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:00.486][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-29 16:07:00.491][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:00.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-29 16:07:00.495][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:00.497][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-06-29 16:07:00.521][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.523][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-29 16:07:00.524][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:00.525][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:00.541][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:00.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:00.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:00.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:00.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:00.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:00.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:00.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:00.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:00.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:00.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:00.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:00.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.578][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:00.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:00.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:00.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:00.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:00.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:00.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:00.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:00.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:00.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:00.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:00.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:00.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:00.612][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.613][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-29 16:07:00.614][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:00.615][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.625][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.626][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-29 16:07:00.627][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:00.628][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.639][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.640][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-29 16:07:00.641][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:00.642][biodb::testThat]
biodb.DEBUG[2024-06-29 16:07:00.645][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-06-29 16:07:00.809][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-06-29 16:07:00.991][biodb::testThat]
biodb.INFO [2024-06-29 16:07:00.992][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-29 16:07:00.993][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:00.994][biodb::testThat]
biodb.DEBUG[2024-06-29 16:07:01.114][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-06-29 16:07:01.234][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:01.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:01.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.239][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.242][ef$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:01.244][biodb::testThat]
biodb.INFO [2024-06-29 16:07:01.245][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-06-29 16:07:01.246][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:01.247][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:01.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:01.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:01.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:01.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:01.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:01.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:01.367][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-29 16:07:01.371][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:01.372][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-29 16:07:01.373][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:01.375][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-06-29 16:07:01.438][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-29 16:07:01.442][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:01.443][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-29 16:07:01.445][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:01.447][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-06-29 16:07:01.468][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:01.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:01.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:01.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:01.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:01.509][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:01.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-29 16:07:01.512][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:01.524][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-29 16:07:01.545][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-29 16:07:01.548][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:01.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-06-29 16:07:01.551][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:01.570][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-06-29 16:07:01.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-29 16:07:01.899][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:01.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-06-29 16:07:01.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:01.913][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-06-29 16:07:01.947][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-29 16:07:01.951][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:01.952][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-06-29 16:07:01.954][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:01.965][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-06-29 16:07:01.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:01.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:01.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:02.014][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:02.017][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:02.019][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-06-29 16:07:02.020][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:02.031][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-06-29 16:07:02.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-29 16:07:02.057][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:02.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-06-29 16:07:02.060][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:02.073][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-06-29 16:07:02.098][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-29 16:07:02.102][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:02.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-06-29 16:07:02.105][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:02.116][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-06-29 16:07:02.145][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-29 16:07:02.149][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:02.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-06-29 16:07:02.152][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:02.155][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-06-29 16:07:02.177][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:02.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:02.192][biodb::testThat]
biodb.INFO [2024-06-29 16:07:02.193][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-06-29 16:07:02.194][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:02.195][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.202][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:02.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:02.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:02.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:02.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:02.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:02.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:02.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:02.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:02.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:02.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:02.266][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:02.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-29 16:07:02.269][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:02.271][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-29 16:07:02.273][private$loadEntries] Creating entries from ids [3]: "171632701, 171615080, 171615005".
biodb.DEBUG[2024-06-29 16:07:02.274][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-29 16:07:02.276][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171632701, 171615080, 171615005".
biodb.TRACE[2024-06-29 16:07:02.277][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-29 16:07:02.305][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171632701.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171615080.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171615005.xml".
biodb.DEBUG[2024-06-29 16:07:02.307][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:02.308][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-29 16:07:02.310][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:02.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:02.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:02.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:02.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:02.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:02.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:02.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:02.327][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.337][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.338][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.345][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.347][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.355][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.356][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.366][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.375][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.384][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.393][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:02.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.396][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.397][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:02.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.402][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:02.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:02.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:02.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:02.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:02.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:02.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.421][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.430][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:02.431][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:02.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.435][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:02.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.440][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:02.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.452][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.453][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.462][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.463][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.466][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.472][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.514][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:02.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.529][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:02.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:02.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:02.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:02.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:02.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:02.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:02.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:02.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:02.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:02.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:02.595][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.604][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.605][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.613][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.614][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.622][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.623][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.631][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.633][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.641][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.642][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.650][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:02.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.655][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:02.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.660][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:02.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:02.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:02.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:02.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:02.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.672][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:02.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:02.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.687][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:02.688][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:02.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.692][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:02.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:02.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.696][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:02.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:02.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.706][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.707][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.715][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.716][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.718][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.724][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:02.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:02.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:02.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:02.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:02.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:02.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:02.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:02.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:02.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:02.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:02.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:02.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:02.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:02.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:02.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.857][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.858][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.866][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.867][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.874][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.875][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.883][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.884][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:02.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.891][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.892][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.900][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:02.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.908][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:02.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:02.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:02.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:02.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:02.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.935][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:02.936][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:02.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.939][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:02.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:02.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.943][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:02.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:02.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.952][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.953][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:02.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.961][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.962][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:02.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.982][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:02.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:03.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:03.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:03.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:03.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.046][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:03.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:03.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:03.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:03.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:03.204][self$createEntryFromContent] Accession numbers: 171632701, 171615080, 171615005.
biodb.DEBUG[2024-06-29 16:07:03.206][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:03.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:03.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:03.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:03.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:03.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:03.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:03.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.310][private$selectFields]
biodb.TRACE[2024-06-29 16:07:03.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:03.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:03.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.329][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.330][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.336][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-06-29 16:07:03.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:03.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:03.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:03.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:03.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:03.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:03.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.381][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.382][private$selectFields]
biodb.TRACE[2024-06-29 16:07:03.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:03.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:03.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.389][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.395][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.396][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.397][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.400][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.416][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615080].
biodb.DEBUG[2024-06-29 16:07:03.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:03.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:03.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:03.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:03.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:03.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:03.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.440][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.441][private$selectFields]
biodb.TRACE[2024-06-29 16:07:03.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:03.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:03.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.449][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.450][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.454][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:03.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.459][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:03.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:03.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:03.477][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-06-29 16:07:03.478][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:03.479][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:03.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:03.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:03.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:03.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:03.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:03.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:03.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:03.509][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:03.513][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:03.515][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:03.516][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:03.634][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:03.635][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:03.637][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:03.639][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:03.751][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:03.754][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-06-29 16:07:03.759][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-06-29 16:07:03.762][private$loadEntries] Creating entries from ids [3]: "171652018, 171652005, 171608484".
biodb.DEBUG[2024-06-29 16:07:03.763][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-29 16:07:03.765][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171652018, 171652005, 171608484".
biodb.TRACE[2024-06-29 16:07:03.767][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-29 16:07:03.768][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:03.769][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:03.771][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:03.772][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:03.773][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:03.789][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-29 16:07:03.791][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171652018,171652005,171608484/XML".
biodb.DEBUG[2024-06-29 16:07:03.794][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:03.795][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:03.796][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171652018,171652005,171608484/XML".
biodb.TRACE[2024-06-29 16:07:03.978][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171652018,171652005,171608484/XML).
biodb.TRACE[2024-06-29 16:07:04.196][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171652018.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171652005.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171608484.xml"
biodb.DEBUG[2024-06-29 16:07:04.202][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:04.204][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-29 16:07:04.206][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:04.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:04.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:04.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:04.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:04.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:04.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:04.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:04.226][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.236][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.237][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.239][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.245][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.247][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.255][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.256][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.264][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.265][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.274][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.275][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.283][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:04.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:04.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.288][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:04.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:04.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.292][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:04.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:04.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:04.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:04.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:04.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:04.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:04.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.315][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.321][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:04.323][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:04.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.326][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:04.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.331][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:04.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:04.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:04.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:04.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.350][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.352][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.360][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.361][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:04.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.430][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:04.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:04.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:04.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:04.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:04.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:04.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:04.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:04.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:04.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:04.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:04.550][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.561][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.563][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.575][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.576][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.586][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.587][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.599][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.609][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.610][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.620][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:04.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:04.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.626][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:04.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:04.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:04.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:04.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:04.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:04.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:04.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:04.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.657][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.669][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:04.670][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:04.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.675][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:04.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.681][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:04.682][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:04.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:04.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:04.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.691][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.692][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.701][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.703][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.705][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.712][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:04.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.727][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:04.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.743][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:04.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.757][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.772][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:04.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:04.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:04.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:04.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:04.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:04.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:04.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:04.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:04.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:04.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:04.854][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:04.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:04.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.864][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.865][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:04.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.874][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.875][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:04.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.884][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.885][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.894][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.895][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:04.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.903][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.904][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.907][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:04.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.915][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:04.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:04.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.920][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:04.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:04.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.924][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:04.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:04.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.928][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:04.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:04.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:04.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:04.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:04.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:04.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.943][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:04.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.951][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:04.952][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:04.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:04.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.959][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:04.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:04.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:04.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.969][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.970][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:04.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.980][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.981][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:04.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.989][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:04.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:04.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:05.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.015][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:05.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.028][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.040][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:05.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:05.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:05.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:05.125][self$createEntryFromContent] Accession numbers: 171652018, 171652005, 171608484.
biodb.DEBUG[2024-06-29 16:07:05.145][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:05.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:05.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:05.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:05.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:05.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:05.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:05.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:05.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.187][private$selectFields]
biodb.TRACE[2024-06-29 16:07:05.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:05.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:05.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.207][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.208][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.213][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652018].
biodb.DEBUG[2024-06-29 16:07:05.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:05.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:05.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:05.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:05.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:05.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:05.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.253][private$selectFields]
biodb.TRACE[2024-06-29 16:07:05.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:05.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:05.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.260][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.264][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.265][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.266][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.272][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:05.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652005].
biodb.DEBUG[2024-06-29 16:07:05.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:05.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:05.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:05.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:05.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:05.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:05.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.311][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.312][private$selectFields]
biodb.TRACE[2024-06-29 16:07:05.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:05.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:05.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.325][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:05.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.330][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:05.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171608484].
biodb.DEBUG[2024-06-29 16:07:05.345][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:05.346][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:05.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:05.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:05.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:05.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:05.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:05.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:05.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:05.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:05.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:05.459][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:05.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-29 16:07:05.462][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:05.471][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-29 16:07:05.473][private$loadEntries] Creating entries from ids [3]: "171661147, 171660036, 171647616".
biodb.DEBUG[2024-06-29 16:07:05.474][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-29 16:07:05.476][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171661147, 171660036, 171647616".
biodb.TRACE[2024-06-29 16:07:05.478][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-29 16:07:05.506][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171661147.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171660036.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171647616.xml".
biodb.DEBUG[2024-06-29 16:07:05.508][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:05.510][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-29 16:07:05.512][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:05.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:05.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:05.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:05.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:05.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:05.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:05.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:05.535][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.548][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.549][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.558][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.560][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.569][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.573][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.575][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.582][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.584][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.596][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.598][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.616][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:05.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.619][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.625][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:05.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:05.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.629][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:05.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:05.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:05.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:05.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.641][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:05.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.647][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:05.648][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:05.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:05.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:05.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.656][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:05.657][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:05.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.661][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:05.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:05.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.664][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.670][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:05.671][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:05.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:05.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:05.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.680][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:05.681][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:05.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.705][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:05.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.719][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.734][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:05.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.750][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:05.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:05.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:05.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:05.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:05.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:05.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:05.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:05.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:05.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:05.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:05.843][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.846][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:05.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:05.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.853][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.854][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:05.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.863][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.864][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.874][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.875][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.884][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:05.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.897][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.898][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:05.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.908][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:05.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:05.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:05.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.919][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:05.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:05.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:05.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:05.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:05.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:05.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:05.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:05.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:05.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:05.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.951][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:05.952][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:05.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.956][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:05.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:05.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.961][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:05.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:05.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:05.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:05.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.971][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:05.973][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:05.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:05.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:05.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.981][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:05.982][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:05.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:05.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:05.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:05.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:05.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:05.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.003][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:06.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.017][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:06.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.031][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:06.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:06.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:06.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:06.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:06.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:06.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:06.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:06.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:06.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:06.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:06.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.119][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.124][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.126][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.134][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.135][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.143][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.144][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.152][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.153][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.161][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.162][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.170][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:06.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:06.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.175][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:06.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:06.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.179][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:06.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:06.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:06.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:06.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:06.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:06.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:06.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.207][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:06.208][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:06.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.216][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:06.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:06.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:06.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.225][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:06.227][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:06.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:06.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.234][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:06.235][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:06.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:06.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:06.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:06.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:06.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.286][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:06.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:06.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:06.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:06.401][self$createEntryFromContent] Accession numbers: 171661147, 171660036, 171647616.
biodb.DEBUG[2024-06-29 16:07:06.403][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:06.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:06.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:06.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:06.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:06.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:06.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:06.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:06.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.431][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.432][private$selectFields]
biodb.TRACE[2024-06-29 16:07:06.433][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:06.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:06.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.454][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.455][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.456][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.459][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.461][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:06.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:06.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:06.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:06.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:06.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:06.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:06.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:06.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:06.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.506][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.507][private$selectFields]
biodb.TRACE[2024-06-29 16:07:06.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:06.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:06.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.522][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.528][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:06.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:06.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:06.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:06.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:06.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:06.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:06.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:06.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:06.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.576][private$selectFields]
biodb.TRACE[2024-06-29 16:07:06.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:06.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:06.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.591][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:06.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.597][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:06.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:06.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171647616].
biodb.DEBUG[2024-06-29 16:07:06.614][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:06.615][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:06.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:06.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:06.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:06.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:06.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:06.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:06.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:06.641][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:06.644][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:06.646][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:06.648][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:06.763][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:06.764][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:06.766][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:06.768][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:06.881][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:06.884][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-06-29 16:07:06.892][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-06-29 16:07:06.896][private$loadEntries] Creating entries from ids [3]: "171651179, 171625410, 171625393".
biodb.DEBUG[2024-06-29 16:07:06.897][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-29 16:07:06.899][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171651179, 171625410, 171625393".
biodb.TRACE[2024-06-29 16:07:06.900][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-29 16:07:06.902][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:06.903][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:06.904][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:06.905][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:06.906][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:06.907][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-29 16:07:06.910][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171651179,171625410,171625393/XML".
biodb.DEBUG[2024-06-29 16:07:06.912][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:06.913][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:06.914][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171651179,171625410,171625393/XML".
biodb.TRACE[2024-06-29 16:07:07.135][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171651179,171625410,171625393/XML).
biodb.TRACE[2024-06-29 16:07:07.354][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171651179.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171625410.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171625393.xml"
biodb.DEBUG[2024-06-29 16:07:07.368][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:07.371][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-29 16:07:07.373][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:07.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:07.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:07.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:07.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:07.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:07.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:07.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:07.401][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.414][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.416][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.425][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.426][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.435][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.436][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.438][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.447][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.449][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.457][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.458][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.468][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:07.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:07.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:07.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:07.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.480][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:07.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:07.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:07.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:07.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:07.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.495][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:07.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:07.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:07.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:07.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.512][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:07.513][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:07.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:07.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.523][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:07.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:07.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.526][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.533][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:07.534][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:07.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.541][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:07.543][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:07.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:07.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:07.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.568][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:07.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.592][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.605][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:07.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:07.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:07.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:07.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:07.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:07.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:07.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:07.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:07.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:07.678][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.687][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.688][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.696][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.697][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.704][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.705][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.713][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.714][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.721][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.723][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.730][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:07.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:07.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.739][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:07.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:07.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:07.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:07.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:07.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:07.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:07.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.766][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:07.767][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:07.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.771][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:07.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:07.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.775][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:07.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:07.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:07.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:07.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.784][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:07.785][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:07.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:07.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:07.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.793][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:07.794][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:07.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:07.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.801][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:07.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.814][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:07.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.840][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.852][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:07.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:07.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:07.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:07.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:07.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:07.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:07.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:07.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:07.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:07.917][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:07.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.926][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.927][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.935][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.936][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.950][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.951][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.959][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.960][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.967][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.968][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:07.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.976][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:07.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:07.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:07.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.984][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:07.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:07.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:07.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:07.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:07.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:07.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:07.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:07.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:07.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:07.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:08.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:08.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:08.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:08.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.010][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:08.011][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:08.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.014][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:08.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:08.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.018][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:08.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:08.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.027][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:08.028][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:08.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:08.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:08.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.036][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:08.037][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:08.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.045][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:08.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.057][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:08.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.096][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:08.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:08.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:08.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:08.182][self$createEntryFromContent] Accession numbers: 171651179, 171625410, 171625393.
biodb.DEBUG[2024-06-29 16:07:08.183][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:08.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:08.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:08.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:08.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:08.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:08.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:08.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:08.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.211][private$selectFields]
biodb.TRACE[2024-06-29 16:07:08.212][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:08.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:08.214][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.225][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.230][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:08.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-06-29 16:07:08.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:08.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:08.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:08.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:08.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:08.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:08.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.270][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.271][private$selectFields]
biodb.TRACE[2024-06-29 16:07:08.272][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:08.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:08.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.275][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.285][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.290][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:08.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625410].
biodb.DEBUG[2024-06-29 16:07:08.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:08.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:08.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:08.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:08.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:08.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:08.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:08.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.334][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.335][private$selectFields]
biodb.TRACE[2024-06-29 16:07:08.336][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:08.337][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:08.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.347][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.349][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.351][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.355][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:08.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.371][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625393].
biodb.DEBUG[2024-06-29 16:07:08.373][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:08.374][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:08.388][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:08.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:08.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:08.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:08.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:08.407][biodb::testThat]
biodb.INFO [2024-06-29 16:07:08.409][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-06-29 16:07:08.410][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:08.411][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:08.415][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:08.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:08.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:08.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:08.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:08.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:08.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:08.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:08.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:08.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:08.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:08.486][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:08.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-06-29 16:07:08.489][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:08.499][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-06-29 16:07:08.502][private$loadEntries] Creating entries from ids [1]: "171540323".
biodb.DEBUG[2024-06-29 16:07:08.503][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:07:08.505][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171540323".
biodb.TRACE[2024-06-29 16:07:08.507][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:08.518][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171540323.xml".
biodb.DEBUG[2024-06-29 16:07:08.520][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:08.522][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:07:08.523][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:08.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:08.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:08.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:08.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:08.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:08.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:08.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:08.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.553][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.554][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.563][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.564][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.566][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.573][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.575][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.584][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.585][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.594][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.595][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.604][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:08.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:08.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.610][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:08.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:08.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.615][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:08.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:08.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:08.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:08.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.628][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:08.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:08.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.643][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:08.645][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:08.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.648][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:08.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.653][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:08.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.656][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:08.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.663][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:08.664][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:08.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.672][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:08.673][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:08.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:08.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:08.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.695][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:08.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:08.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:08.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:08.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.744][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:08.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:08.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:08.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:08.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:08.823][self$createEntryFromContent] Accession numbers: 171540323.
biodb.DEBUG[2024-06-29 16:07:08.825][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:08.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:08.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:08.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:08.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:08.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:08.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:08.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:08.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.931][private$selectFields]
biodb.TRACE[2024-06-29 16:07:08.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:08.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:08.935][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.955][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.965][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:08.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.972][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:08.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:08.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:08.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:08.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-06-29 16:07:08.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:08.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:08.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:09.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:09.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:09.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:09.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:09.017][private$selectFields]
biodb.TRACE[2024-06-29 16:07:09.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:09.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:09.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:09.021][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:09.031][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:09.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.037][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-06-29 16:07:09.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:09.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:09.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:09.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:09.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:09.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:09.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:09.077][private$selectFields]
biodb.TRACE[2024-06-29 16:07:09.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:09.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:09.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:09.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:09.092][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:09.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.097][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:09.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:09.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171540323].
biodb.DEBUG[2024-06-29 16:07:09.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:09.116][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:09.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:09.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:09.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:09.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:09.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:09.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:09.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:09.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:09.149][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:09.150][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:09.152][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:09.275][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:09.276][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:09.278][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:09.279][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:09.438][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:09.441][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-06-29 16:07:09.446][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-06-29 16:07:09.448][private$loadEntries] Creating entries from ids [2]: "171459563, 171417849".
biodb.DEBUG[2024-06-29 16:07:09.449][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-29 16:07:09.451][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171459563, 171417849".
biodb.TRACE[2024-06-29 16:07:09.453][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-29 16:07:09.461][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:09.463][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:09.464][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:09.465][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:09.466][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:09.467][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-29 16:07:09.469][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171459563,171417849/XML".
biodb.DEBUG[2024-06-29 16:07:09.472][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:09.473][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:09.474][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171459563,171417849/XML".
biodb.TRACE[2024-06-29 16:07:09.647][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171459563,171417849/XML).
biodb.TRACE[2024-06-29 16:07:09.814][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171459563.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171417849.xml"
biodb.DEBUG[2024-06-29 16:07:09.819][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:09.822][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-29 16:07:09.823][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:09.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:09.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:09.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:09.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:09.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:09.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:09.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:09.843][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:09.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:09.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.846][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:09.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:09.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.852][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.853][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.855][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.861][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:09.862][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:09.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.864][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:09.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.872][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.873][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.882][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:09.884][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:09.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.892][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:09.893][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:09.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:09.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.902][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:09.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:09.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.906][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:09.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:09.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:09.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:09.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:09.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:09.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:09.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:09.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:09.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:09.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.937][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:09.938][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:09.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.945][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:09.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:09.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:09.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:09.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.954][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:09.955][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:09.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:09.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.963][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:09.964][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:09.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:09.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.986][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:09.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.000][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.013][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:10.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.026][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:10.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:10.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:10.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:10.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:10.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:10.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:10.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:10.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:10.087][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.096][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.097][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.104][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.105][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.113][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.114][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.130][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.131][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.139][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:10.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.144][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:10.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.148][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:10.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:10.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:10.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:10.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:10.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:10.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:10.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:10.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.198][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:10.199][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:10.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.204][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:10.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:10.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.209][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:10.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:10.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:10.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:10.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.222][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:10.224][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:10.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:10.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:10.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.232][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:10.233][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:10.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:10.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.242][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:10.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.256][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:10.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:10.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:10.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.286][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:10.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.305][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:10.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:10.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:10.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:10.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:10.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:10.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:10.396][self$createEntryFromContent] Accession numbers: 171459563, 171417849.
biodb.DEBUG[2024-06-29 16:07:10.397][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:10.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:10.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:10.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:10.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:10.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:10.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:10.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:10.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.455][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.456][private$selectFields]
biodb.TRACE[2024-06-29 16:07:10.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:10.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:10.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.460][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.469][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.472][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.474][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:10.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171608484].
biodb.DEBUG[2024-06-29 16:07:10.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:10.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:10.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:10.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:10.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:10.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:10.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:10.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.514][private$selectFields]
biodb.TRACE[2024-06-29 16:07:10.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:10.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:10.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.521][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.525][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.527][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.531][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.532][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:10.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171459563].
biodb.DEBUG[2024-06-29 16:07:10.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:10.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:10.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:10.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:10.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:10.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:10.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:10.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.572][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.573][private$selectFields]
biodb.TRACE[2024-06-29 16:07:10.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:10.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:10.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.582][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.585][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.587][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:10.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.591][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.592][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:10.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:10.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171417849].
biodb.DEBUG[2024-06-29 16:07:10.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:10.608][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:10.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:10.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:10.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:10.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:10.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:10.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:10.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:10.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:10.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:11.091][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:11.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-06-29 16:07:11.096][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:11.112][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-06-29 16:07:11.116][private$loadEntries] Creating entries from ids [1]: "171624733".
biodb.DEBUG[2024-06-29 16:07:11.118][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:07:11.119][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171624733".
biodb.TRACE[2024-06-29 16:07:11.121][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:11.134][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171624733.xml".
biodb.DEBUG[2024-06-29 16:07:11.136][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:11.137][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:07:11.139][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:11.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:11.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:11.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:11.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:11.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:11.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:11.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:11.160][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.170][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.171][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.179][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.181][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.188][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.189][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.197][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.198][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.205][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.206][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.214][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:11.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:11.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.218][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:11.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:11.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:11.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:11.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:11.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:11.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:11.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:11.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:11.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:11.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:11.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:11.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:11.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:11.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.249][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:11.250][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:11.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.252][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.257][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:11.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:11.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.260][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:11.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.266][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:11.267][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:11.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:11.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:11.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.275][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:11.276][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:11.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:11.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:11.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.283][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:11.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:11.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.296][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:11.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.309][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:11.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:11.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:11.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:11.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:11.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:11.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:11.396][self$createEntryFromContent] Accession numbers: 171624733.
biodb.DEBUG[2024-06-29 16:07:11.397][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:11.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:11.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:11.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:11.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:11.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:11.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:11.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:11.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.421][private$selectFields]
biodb.TRACE[2024-06-29 16:07:11.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:11.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:11.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.435][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.440][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:11.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:11.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:11.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:11.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:11.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:11.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:11.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:11.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:11.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.483][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.484][private$selectFields]
biodb.TRACE[2024-06-29 16:07:11.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:11.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:11.488][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.492][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.493][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.494][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.497][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.498][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.501][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.504][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:11.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.517][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:11.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:11.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:11.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:11.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:11.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:11.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:11.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:11.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.539][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.540][private$selectFields]
biodb.TRACE[2024-06-29 16:07:11.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:11.542][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:11.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.547][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.556][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.562][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:11.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.582][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171624733].
biodb.DEBUG[2024-06-29 16:07:11.584][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:11.586][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:11.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:11.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:11.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:11.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:11.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:11.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:11.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:11.631][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:11.635][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:11.637][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:11.639][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:11.790][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:11.792][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:11.793][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:11.795][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:11.928][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:11.930][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-06-29 16:07:11.935][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-06-29 16:07:11.938][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:11.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:11.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:11.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:11.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:11.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:11.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:11.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:11.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.963][private$selectFields]
biodb.TRACE[2024-06-29 16:07:11.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:11.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:11.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.976][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:11.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.982][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:11.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:11.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:11.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-06-29 16:07:11.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:11.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:11.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.019][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.020][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.023][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.024][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.033][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.034][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.039][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.053][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625410].
biodb.DEBUG[2024-06-29 16:07:12.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.080][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.094][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.095][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.096][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.099][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625393].
biodb.DEBUG[2024-06-29 16:07:12.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:12.115][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.129][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:12.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:12.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:12.141][biodb::testThat]
biodb.INFO [2024-06-29 16:07:12.142][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-06-29 16:07:12.143][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:12.144][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:12.148][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:12.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.153][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:12.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:12.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:12.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:12.224][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:12.227][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:12.229][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-29 16:07:12.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:12.232][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-29 16:07:12.234][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:12.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.258][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.259][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.262][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.272][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.277][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-06-29 16:07:12.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.318][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.321][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.333][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.339][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615080].
biodb.DEBUG[2024-06-29 16:07:12.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.378][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.379][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.380][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.381][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.382][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.389][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.390][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.391][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.395][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.396][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-06-29 16:07:12.411][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:12.412][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:12.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:12.431][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:12.435][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:12.436][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-29 16:07:12.437][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:12.440][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-29 16:07:12.443][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:12.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.467][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.468][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.469][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.470][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.471][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.482][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.483][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.488][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.489][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652018].
biodb.DEBUG[2024-06-29 16:07:12.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.528][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.531][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.542][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.547][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.548][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652005].
biodb.DEBUG[2024-06-29 16:07:12.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.598][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.610][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.612][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.613][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.614][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.617][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171608484].
biodb.DEBUG[2024-06-29 16:07:12.632][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:12.633][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:12.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:12.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:12.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:12.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:12.725][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:12.728][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-29 16:07:12.731][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:12.733][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-29 16:07:12.736][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:12.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.761][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.762][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.775][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.779][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.780][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:12.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.819][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.820][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.823][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.827][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.828][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.835][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.837][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.840][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:12.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:12.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.879][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.880][private$selectFields]
biodb.TRACE[2024-06-29 16:07:12.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:12.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:12.883][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.894][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:12.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.899][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:12.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:12.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171647616].
biodb.DEBUG[2024-06-29 16:07:12.915][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:12.916][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:12.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:12.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:12.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:12.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:12.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:12.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:12.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:12.940][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:12.945][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:12.947][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-29 16:07:12.950][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:13.001][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-29 16:07:13.004][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:13.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:13.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:13.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:13.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:13.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:13.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:13.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:13.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.055][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.056][private$selectFields]
biodb.TRACE[2024-06-29 16:07:13.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:13.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:13.060][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.067][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.072][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.075][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.079][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:13.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-06-29 16:07:13.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:13.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:13.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:13.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:13.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:13.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:13.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:13.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.207][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.208][private$selectFields]
biodb.TRACE[2024-06-29 16:07:13.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:13.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:13.212][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.226][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.231][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625410].
biodb.DEBUG[2024-06-29 16:07:13.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:13.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:13.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:13.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:13.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:13.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:13.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.271][private$selectFields]
biodb.TRACE[2024-06-29 16:07:13.272][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:13.274][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:13.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.276][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.277][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.280][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.284][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.286][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:13.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.291][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:13.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:13.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625393].
biodb.DEBUG[2024-06-29 16:07:13.307][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:13.308][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:13.334][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:13.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:13.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:13.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.348][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:13.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:13.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.353][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.356][ef$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:13.358][biodb::testThat]
biodb.INFO [2024-06-29 16:07:13.359][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-06-29 16:07:13.360][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:13.361][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:13.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.370][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:13.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:13.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:13.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:13.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:13.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:13.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:13.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:13.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:13.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:13.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:13.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:13.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:13.433][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:13.436][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:13.438][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:13.439][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:13.552][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:13.553][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:13.556][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:13.558][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:13.673][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:13.676][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-06-29 16:07:13.680][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-06-29 16:07:13.683][private$loadEntries] Creating entries from ids [3]: "171659133, 171650254, 171647578".
biodb.DEBUG[2024-06-29 16:07:13.684][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-29 16:07:13.686][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171659133, 171650254, 171647578".
biodb.TRACE[2024-06-29 16:07:13.688][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-29 16:07:13.689][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:13.690][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:13.691][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:13.692][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:13.693][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:13.695][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-29 16:07:13.697][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171659133,171650254,171647578/XML".
biodb.DEBUG[2024-06-29 16:07:13.699][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:13.700][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:13.701][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171659133,171650254,171647578/XML".
biodb.TRACE[2024-06-29 16:07:13.879][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171659133,171650254,171647578/XML).
biodb.TRACE[2024-06-29 16:07:14.263][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171659133.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171650254.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171647578.xml"
biodb.DEBUG[2024-06-29 16:07:14.270][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:14.272][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-29 16:07:14.273][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:14.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:14.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:14.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:14.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:14.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:14.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:14.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:14.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.304][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.305][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.315][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.317][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.326][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.327][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.339][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.341][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.367][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.368][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.379][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:14.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:14.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.385][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:14.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:14.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.392][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:14.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:14.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:14.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:14.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:14.407][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:14.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:14.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:14.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.427][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:14.428][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:14.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.430][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.432][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:14.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:14.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.437][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:14.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:14.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.457][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:14.458][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:14.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:14.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.467][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:14.469][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:14.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:14.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:14.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.490][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:14.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.522][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.542][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:14.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:14.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:14.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:14.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:14.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:14.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:14.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:14.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:14.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:14.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:14.637][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.642][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.648][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.650][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.661][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.662][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.664][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.672][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.673][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.683][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.685][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.695][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.696][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.705][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:14.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:14.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.712][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:14.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:14.719][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:14.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:14.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:14.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:14.729][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:14.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.732][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.739][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:14.740][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:14.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.743][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.751][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:14.753][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:14.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:14.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.770][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:14.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:14.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.774][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.782][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:14.784][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:14.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:14.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:14.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.793][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:14.794][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:14.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:14.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.802][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:14.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.815][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:14.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.828][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:14.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.842][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:14.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:14.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:14.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:14.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:14.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:14.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:14.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:14.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:14.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:14.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:14.937][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.946][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.947][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.956][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.957][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.968][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.969][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:14.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.977][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.978][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:14.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.986][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.987][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.989][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:14.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:14.995][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:14.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:14.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:14.999][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:15.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.005][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:15.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:15.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:15.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:15.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.014][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:15.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:15.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:15.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:15.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:15.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:15.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.027][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:15.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:15.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.033][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:15.034][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:15.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.037][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:15.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:15.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.042][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:15.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:15.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:15.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:15.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.052][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:15.053][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:15.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:15.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.061][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:15.062][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:15.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:15.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.071][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:15.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:15.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:15.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:15.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:15.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.084][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:15.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:15.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:15.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.110][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:15.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:15.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:15.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:15.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:15.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:15.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:15.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:15.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:15.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:15.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:15.210][self$createEntryFromContent] Accession numbers: 171659133, 171650254, 171647578.
biodb.DEBUG[2024-06-29 16:07:15.211][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:15.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:15.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:15.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:15.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:15.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:15.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:15.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:15.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.238][private$selectFields]
biodb.TRACE[2024-06-29 16:07:15.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:15.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:15.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.250][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.258][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.260][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.264][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.265][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:15.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.282][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171659133].
biodb.DEBUG[2024-06-29 16:07:15.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:15.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:15.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:15.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:15.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:15.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:15.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:15.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.311][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.312][private$selectFields]
biodb.TRACE[2024-06-29 16:07:15.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:15.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:15.315][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.324][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.326][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.332][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:15.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171650254].
biodb.DEBUG[2024-06-29 16:07:15.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:15.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:15.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:15.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:15.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:15.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:15.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.371][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.372][private$selectFields]
biodb.TRACE[2024-06-29 16:07:15.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:15.375][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:15.376][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.387][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:15.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.393][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:15.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:15.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:15.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:15.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171647578].
biodb.DEBUG[2024-06-29 16:07:15.410][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:15.411][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:15.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:15.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:15.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:15.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:15.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:15.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:15.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:15.436][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:15.440][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:15.441][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:15.443][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:15.557][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:15.559][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:15.562][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:15.564][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:15.722][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:15.725][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-06-29 16:07:15.729][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-06-29 16:07:15.733][private$loadEntries] Creating entries from ids [3]: "171662331, 171655526, 171655167".
biodb.DEBUG[2024-06-29 16:07:15.735][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-29 16:07:15.737][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171662331, 171655526, 171655167".
biodb.TRACE[2024-06-29 16:07:15.738][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-29 16:07:15.740][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:15.741][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:15.742][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:15.743][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:15.744][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:15.745][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-29 16:07:15.747][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171662331,171655526,171655167/XML".
biodb.DEBUG[2024-06-29 16:07:15.750][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:15.751][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:15.752][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171662331,171655526,171655167/XML".
biodb.TRACE[2024-06-29 16:07:15.886][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171662331,171655526,171655167/XML).
biodb.TRACE[2024-06-29 16:07:16.109][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171662331.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171655526.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171655167.xml"
biodb.DEBUG[2024-06-29 16:07:16.114][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:16.116][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-29 16:07:16.117][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:16.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:16.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:16.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:16.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:16.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:16.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:16.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:16.134][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.143][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.144][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.147][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.148][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.150][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.151][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.152][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.155][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.157][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.160][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.161][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.164][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:16.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:16.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.168][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:16.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.173][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:16.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:16.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.181][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:16.182][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:16.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.184][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:16.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.198][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:16.199][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:16.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.202][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:16.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:16.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:16.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:16.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.212][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.213][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.221][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.222][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.229][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:16.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.238][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:16.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.242][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:16.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.246][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:16.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:16.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:16.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:16.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:16.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:16.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:16.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:16.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:16.306][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.316][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.317][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.325][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.326][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.334][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.335][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.342][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.343][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.351][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.352][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.360][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:16.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:16.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.364][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:16.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:16.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.368][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:16.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:16.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.377][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:16.378][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:16.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:16.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:16.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.389][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.394][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:16.395][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:16.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.399][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:16.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:16.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.403][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:16.404][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:16.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:16.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:16.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.412][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.413][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.421][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.422][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.425][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.431][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:16.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.444][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:16.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:16.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.471][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:16.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.483][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:16.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:16.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:16.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:16.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:16.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:16.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:16.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:16.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:16.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:16.603][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.616][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.630][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.640][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.642][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.650][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.651][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.669][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.671][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.679][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:16.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:16.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.689][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:16.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:16.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.693][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:16.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:16.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.699][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:16.700][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:16.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:16.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:16.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.709][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.719][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:16.720][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:16.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:16.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:16.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.737][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:16.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:16.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:16.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:16.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.747][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.749][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.758][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.760][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:16.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:16.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.804][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:16.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.819][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:16.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:16.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.833][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:16.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:16.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:16.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:16.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:16.922][self$createEntryFromContent] Accession numbers: 171662331, 171655526, 171655167.
biodb.DEBUG[2024-06-29 16:07:16.924][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:16.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:16.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:16.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:16.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:16.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:16.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:16.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:16.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:16.949][private$selectFields]
biodb.TRACE[2024-06-29 16:07:16.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:16.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:16.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:16.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:16.963][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:16.964][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.968][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:16.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:16.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:16.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171662331].
biodb.DEBUG[2024-06-29 16:07:16.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:16.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:16.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:16.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:16.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:16.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:16.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:16.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:16.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.007][private$selectFields]
biodb.TRACE[2024-06-29 16:07:17.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:17.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:17.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.021][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.026][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:17.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171655526].
biodb.DEBUG[2024-06-29 16:07:17.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.065][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.066][private$selectFields]
biodb.TRACE[2024-06-29 16:07:17.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:17.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:17.069][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.070][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.071][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.079][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.082][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.088][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:17.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.104][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171655167].
biodb.DEBUG[2024-06-29 16:07:17.105][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:17.106][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:17.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:17.163][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:17.167][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:17.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-29 16:07:17.170][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:17.171][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-29 16:07:17.173][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:17.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:17.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.198][private$selectFields]
biodb.TRACE[2024-06-29 16:07:17.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:17.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:17.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.212][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.213][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.214][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.217][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-06-29 16:07:17.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:17.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.255][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.256][private$selectFields]
biodb.TRACE[2024-06-29 16:07:17.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:17.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:17.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.268][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.269][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.270][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.275][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:17.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615080].
biodb.DEBUG[2024-06-29 16:07:17.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:17.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.314][private$selectFields]
biodb.TRACE[2024-06-29 16:07:17.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:17.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:17.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.320][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.328][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.333][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.334][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:17.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-06-29 16:07:17.350][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:17.351][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:17.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:17.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:17.374][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:17.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-29 16:07:17.377][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:17.379][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-29 16:07:17.382][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:17.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:17.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.408][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.409][private$selectFields]
biodb.TRACE[2024-06-29 16:07:17.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:17.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:17.412][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.422][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.424][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.430][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:17.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652018].
biodb.DEBUG[2024-06-29 16:07:17.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:17.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.473][private$selectFields]
biodb.TRACE[2024-06-29 16:07:17.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:17.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:17.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.482][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.487][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.488][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.494][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:17.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652005].
biodb.DEBUG[2024-06-29 16:07:17.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:17.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.539][private$selectFields]
biodb.TRACE[2024-06-29 16:07:17.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:17.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:17.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.552][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.563][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:17.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.569][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:17.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:17.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:17.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171608484].
biodb.DEBUG[2024-06-29 16:07:17.590][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:17.591][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:17.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:17.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:17.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:17.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:17.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:17.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:17.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:17.645][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:17.649][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:17.651][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:17.653][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:17.766][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:17.768][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:17.770][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:17.771][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:17.932][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:17.936][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-06-29 16:07:17.974][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-06-29 16:07:17.986][private$loadEntries] Creating entries from ids [1]: "171660819".
biodb.DEBUG[2024-06-29 16:07:17.988][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:07:17.990][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171660819".
biodb.TRACE[2024-06-29 16:07:17.993][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-29 16:07:17.995][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:17.997][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:17.998][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:17.999][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:18.000][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:18.001][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-29 16:07:18.004][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171660819/XML".
biodb.DEBUG[2024-06-29 16:07:18.007][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:18.008][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:18.011][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171660819/XML".
biodb.TRACE[2024-06-29 16:07:18.192][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171660819/XML).
biodb.TRACE[2024-06-29 16:07:18.347][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171660819.xml"
biodb.DEBUG[2024-06-29 16:07:18.350][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:18.351][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:07:18.353][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:18.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:18.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:18.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:18.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:18.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:18.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:18.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:18.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.379][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.380][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.388][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.389][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.397][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.398][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.406][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.407][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.415][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.416][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.424][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:18.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:18.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.432][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:18.434][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:18.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:18.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:18.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:18.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:18.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:18.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:18.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:18.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:18.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.459][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:18.460][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:18.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.463][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:18.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:18.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.468][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:18.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:18.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:18.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.477][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:18.478][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:18.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:18.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:18.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.485][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:18.486][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:18.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.488][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:18.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:18.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:18.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:18.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.507][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:18.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:18.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.520][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:18.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.533][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:18.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:18.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:18.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:18.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:18.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:18.623][self$createEntryFromContent] Accession numbers: 171660819.
biodb.DEBUG[2024-06-29 16:07:18.624][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:18.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:18.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:18.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:18.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:18.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:18.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:18.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:18.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.653][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.654][private$selectFields]
biodb.TRACE[2024-06-29 16:07:18.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:18.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:18.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.670][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.677][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:18.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:18.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:18.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:18.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:18.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:18.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:18.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:18.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.721][private$selectFields]
biodb.TRACE[2024-06-29 16:07:18.722][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:18.723][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:18.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.735][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.736][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.740][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.741][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:18.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660819].
biodb.DEBUG[2024-06-29 16:07:18.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:18.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:18.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:18.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:18.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:18.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:18.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.784][private$selectFields]
biodb.TRACE[2024-06-29 16:07:18.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:18.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:18.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:18.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.804][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:18.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:18.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:18.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:18.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:18.821][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:18.822][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:18.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:18.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:18.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:18.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:18.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:18.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:18.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:18.843][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:18.847][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:18.848][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:18.850][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:18.978][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:18.980][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:18.982][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:18.984][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:19.103][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:19.106][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-06-29 16:07:19.111][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-06-29 16:07:19.115][private$loadEntries] Creating entries from ids [3]: "171663214, 171663211, 171662463".
biodb.DEBUG[2024-06-29 16:07:19.116][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-29 16:07:19.119][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171663214, 171663211, 171662463".
biodb.TRACE[2024-06-29 16:07:19.124][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-29 16:07:19.125][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:19.127][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:19.128][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:19.130][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:19.131][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:19.132][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-29 16:07:19.134][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171663214,171663211,171662463/XML".
biodb.DEBUG[2024-06-29 16:07:19.137][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:19.139][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:19.142][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171663214,171663211,171662463/XML".
biodb.TRACE[2024-06-29 16:07:19.279][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171663214,171663211,171662463/XML).
biodb.TRACE[2024-06-29 16:07:19.478][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171663214.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171663211.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171662463.xml"
biodb.DEBUG[2024-06-29 16:07:19.534][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:19.537][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-29 16:07:19.538][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:19.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:19.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:19.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:19.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:19.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:19.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:19.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:19.585][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:19.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:19.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:19.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.594][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.596][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.604][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.606][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.615][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.616][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.624][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.625][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.628][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.635][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.636][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.644][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:19.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:19.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.649][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:19.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:19.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.653][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:19.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:19.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:19.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:19.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:19.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:19.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:19.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:19.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:19.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:19.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:19.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.685][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:19.687][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:19.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.691][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:19.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:19.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.696][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:19.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:19.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:19.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:19.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.721][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:19.723][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:19.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.733][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:19.734][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:19.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.742][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:19.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:19.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:19.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.795][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:19.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:19.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:19.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:19.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:19.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:19.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:19.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:19.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:19.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:19.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:19.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:19.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:19.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:19.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:19.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:19.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:19.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:19.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:19.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:19.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:19.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:19.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:19.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:19.858][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:19.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:19.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.861][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:19.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:19.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.866][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.868][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.876][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.877][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:19.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.884][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.886][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.893][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.894][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.902][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.903][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:19.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.911][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:19.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:19.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.915][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:19.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:19.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.919][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:19.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:19.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:19.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:19.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:19.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:19.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:19.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:19.938][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:19.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:19.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.946][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:19.947][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:19.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.954][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:19.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:19.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.963][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:19.964][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:19.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:19.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:19.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.972][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:19.973][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:19.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:19.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:19.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.981][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:19.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.993][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:19.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:19.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.019][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.031][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:20.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:20.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:20.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:20.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:20.103][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.113][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.114][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.124][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.125][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.133][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.134][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.142][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.143][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.151][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.152][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.159][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:20.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:20.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.164][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.168][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:20.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:20.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:20.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:20.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:20.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:20.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:20.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:20.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:20.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:20.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:20.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.197][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:20.199][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:20.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.202][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:20.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.206][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:20.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:20.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:20.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:20.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.215][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:20.216][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:20.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.224][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:20.225][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:20.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:20.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:20.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.233][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:20.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.246][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:20.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:20.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.259][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:20.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.271][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:20.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:20.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:20.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:20.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:20.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:20.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:20.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:20.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:20.367][self$createEntryFromContent] Accession numbers: 171663214, 171663211, 171662463.
biodb.DEBUG[2024-06-29 16:07:20.368][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:20.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:20.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.395][private$selectFields]
biodb.TRACE[2024-06-29 16:07:20.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:20.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:20.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.402][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.408][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.412][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.413][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171663214].
biodb.DEBUG[2024-06-29 16:07:20.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:20.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:20.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.452][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.459][private$selectFields]
biodb.TRACE[2024-06-29 16:07:20.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:20.462][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:20.463][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.473][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.474][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.480][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:20.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171663211].
biodb.DEBUG[2024-06-29 16:07:20.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:20.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.521][private$selectFields]
biodb.TRACE[2024-06-29 16:07:20.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:20.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:20.524][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.533][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.534][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.535][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.540][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171662463].
biodb.DEBUG[2024-06-29 16:07:20.557][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:20.558][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:20.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:20.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:20.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:20.618][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:20.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-06-29 16:07:20.621][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:20.625][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-06-29 16:07:20.628][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:20.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:20.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.666][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.668][private$selectFields]
biodb.TRACE[2024-06-29 16:07:20.669][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:20.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:20.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.679][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.680][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.685][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.686][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.691][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.710][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171659133].
biodb.DEBUG[2024-06-29 16:07:20.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:20.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.778][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.779][private$selectFields]
biodb.TRACE[2024-06-29 16:07:20.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:20.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:20.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.794][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.795][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.796][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.797][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.801][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:20.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171650254].
biodb.DEBUG[2024-06-29 16:07:20.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:20.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:20.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.943][private$selectFields]
biodb.TRACE[2024-06-29 16:07:20.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:20.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:20.946][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.949][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.951][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.957][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.958][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:20.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.964][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:20.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:20.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:20.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:20.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171647578].
biodb.DEBUG[2024-06-29 16:07:20.983][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:20.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:20.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:20.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:20.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:20.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:20.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:20.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:21.008][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:21.012][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:21.014][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-06-29 16:07:21.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:21.205][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-06-29 16:07:21.210][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:21.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:21.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.249][private$selectFields]
biodb.TRACE[2024-06-29 16:07:21.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:21.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:21.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.272][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.275][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.278][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.281][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.282][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:21.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171662331].
biodb.DEBUG[2024-06-29 16:07:21.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:21.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.328][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.330][private$selectFields]
biodb.TRACE[2024-06-29 16:07:21.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:21.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:21.333][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.344][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.345][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.350][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:21.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171655526].
biodb.DEBUG[2024-06-29 16:07:21.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:21.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.399][private$selectFields]
biodb.TRACE[2024-06-29 16:07:21.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:21.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:21.402][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.407][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.412][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.413][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.419][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:21.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171655167].
biodb.DEBUG[2024-06-29 16:07:21.435][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:21.437][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:21.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:21.488][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:21.492][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:21.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-29 16:07:21.495][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:21.497][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-29 16:07:21.499][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:21.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.528][private$selectFields]
biodb.TRACE[2024-06-29 16:07:21.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:21.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:21.531][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.532][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.543][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.548][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.549][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:21.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-06-29 16:07:21.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:21.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.595][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.597][private$selectFields]
biodb.TRACE[2024-06-29 16:07:21.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:21.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:21.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.604][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.606][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.611][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.614][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.617][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:21.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615080].
biodb.DEBUG[2024-06-29 16:07:21.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:21.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.823][private$selectFields]
biodb.TRACE[2024-06-29 16:07:21.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:21.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:21.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.827][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.831][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.837][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.838][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.839][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.843][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.844][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:21.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.859][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-06-29 16:07:21.860][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:21.869][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:21.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:21.893][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:21.897][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:21.898][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-29 16:07:21.900][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:21.902][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-29 16:07:21.904][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:21.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:21.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.930][private$selectFields]
biodb.TRACE[2024-06-29 16:07:21.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:21.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:21.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.944][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.950][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:21.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.965][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652018].
biodb.DEBUG[2024-06-29 16:07:21.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:21.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:21.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:21.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:21.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:21.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:21.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:21.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.990][private$selectFields]
biodb.TRACE[2024-06-29 16:07:21.991][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:21.992][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:21.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:21.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:21.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:21.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:21.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.004][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.012][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652005].
biodb.DEBUG[2024-06-29 16:07:22.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:22.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.092][private$selectFields]
biodb.TRACE[2024-06-29 16:07:22.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:22.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:22.096][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.099][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.102][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.108][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.109][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.117][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171608484].
biodb.DEBUG[2024-06-29 16:07:22.135][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:22.136][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:22.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:22.391][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:22.394][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:22.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-06-29 16:07:22.397][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:22.400][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-06-29 16:07:22.403][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:22.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.433][private$selectFields]
biodb.TRACE[2024-06-29 16:07:22.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:22.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:22.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.448][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.449][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.450][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.453][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:22.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:22.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.494][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.495][private$selectFields]
biodb.TRACE[2024-06-29 16:07:22.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:22.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:22.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.501][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.508][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.509][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.515][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660819].
biodb.DEBUG[2024-06-29 16:07:22.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:22.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.570][private$selectFields]
biodb.TRACE[2024-06-29 16:07:22.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:22.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:22.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.579][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.583][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.585][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.591][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:22.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:22.608][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:22.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:22.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:22.635][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:22.637][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-06-29 16:07:22.638][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:22.641][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-06-29 16:07:22.643][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:22.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:22.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.669][private$selectFields]
biodb.TRACE[2024-06-29 16:07:22.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:22.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:22.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.678][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.679][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.682][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.683][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.689][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:22.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171663214].
biodb.DEBUG[2024-06-29 16:07:22.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.728][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.729][private$selectFields]
biodb.TRACE[2024-06-29 16:07:22.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:22.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:22.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.743][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.744][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.749][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:22.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.764][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171663211].
biodb.DEBUG[2024-06-29 16:07:22.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:22.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.789][private$selectFields]
biodb.TRACE[2024-06-29 16:07:22.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:22.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:22.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.797][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.803][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.804][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:22.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.809][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.810][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:22.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:22.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171662463].
biodb.DEBUG[2024-06-29 16:07:22.827][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:22.828][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:22.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:22.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:22.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:22.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:22.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:22.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:22.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:22.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:22.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:22.917][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:22.921][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:22.922][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:22.925][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:23.037][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:23.039][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:23.041][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:23.043][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:23.158][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:23.161][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-06-29 16:07:23.166][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-06-29 16:07:23.169][private$loadEntries] Creating entries from ids [1]: "171659294".
biodb.DEBUG[2024-06-29 16:07:23.171][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:07:23.172][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171659294".
biodb.TRACE[2024-06-29 16:07:23.174][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-29 16:07:23.175][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:23.176][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:23.177][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:23.178][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:23.179][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:23.180][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-29 16:07:23.183][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171659294/XML".
biodb.DEBUG[2024-06-29 16:07:23.193][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:23.195][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:23.197][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171659294/XML".
biodb.TRACE[2024-06-29 16:07:23.349][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171659294/XML).
biodb.TRACE[2024-06-29 16:07:23.500][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171659294.xml"
biodb.DEBUG[2024-06-29 16:07:23.503][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:23.505][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:07:23.506][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:23.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:23.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:23.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:23.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:23.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:23.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:23.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:23.524][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.534][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.535][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.538][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.543][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.545][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.547][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.552][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.553][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.562][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.563][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.571][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.572][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.580][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:23.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:23.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.585][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:23.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:23.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.590][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:23.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:23.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:23.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:23.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:23.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:23.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:23.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:23.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:23.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:23.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.611][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:23.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:23.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.617][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:23.618][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:23.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.621][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:23.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:23.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.626][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:23.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:23.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.629][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:23.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:23.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.635][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:23.637][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:23.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:23.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:23.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.646][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:23.648][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:23.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.651][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:23.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.660][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:23.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:23.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:23.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:23.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:23.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:23.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:23.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:23.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:23.803][self$createEntryFromContent] Accession numbers: 171659294.
biodb.DEBUG[2024-06-29 16:07:23.804][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:23.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:23.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:23.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:23.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:23.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:23.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:23.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:23.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.836][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.838][private$selectFields]
biodb.TRACE[2024-06-29 16:07:23.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:23.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:23.842][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.845][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.847][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.849][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.851][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.852][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.853][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.859][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:23.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:23.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:23.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:23.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:23.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:23.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:23.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:23.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:23.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.898][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.899][private$selectFields]
biodb.TRACE[2024-06-29 16:07:23.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:23.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:23.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.920][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.922][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.927][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:23.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.942][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:23.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:23.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:23.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:23.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:23.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:23.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:23.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:23.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.967][private$selectFields]
biodb.TRACE[2024-06-29 16:07:23.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:23.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:23.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.981][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:23.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.987][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:23.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:23.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171659294].
biodb.DEBUG[2024-06-29 16:07:24.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:24.003][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:24.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:24.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:24.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:24.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:24.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:24.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:24.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:24.027][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:24.031][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:24.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:24.035][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:24.150][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:24.152][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:24.153][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:24.155][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:24.270][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:24.272][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-06-29 16:07:24.277][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-06-29 16:07:24.281][private$loadEntries] Creating entries from ids [3]: "171658959, 171656633, 171654938".
biodb.DEBUG[2024-06-29 16:07:24.283][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-29 16:07:24.285][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171658959, 171656633, 171654938".
biodb.TRACE[2024-06-29 16:07:24.286][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-29 16:07:24.288][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-29 16:07:24.289][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:24.290][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:24.291][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-29 16:07:24.292][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-29 16:07:24.293][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-29 16:07:24.295][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171658959,171656633,171654938/XML".
biodb.DEBUG[2024-06-29 16:07:24.298][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:24.299][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:24.300][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171658959,171656633,171654938/XML".
biodb.TRACE[2024-06-29 16:07:24.442][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171658959,171656633,171654938/XML).
biodb.TRACE[2024-06-29 16:07:24.660][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171658959.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171656633.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171654938.xml"
biodb.DEBUG[2024-06-29 16:07:24.666][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-29 16:07:24.668][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-29 16:07:24.670][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-29 16:07:24.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:24.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:24.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:24.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:24.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:24.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:24.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:24.690][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:24.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:24.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.693][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:24.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:24.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.701][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.702][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.712][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.713][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.721][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.722][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.724][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.729][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.730][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.732][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.738][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.739][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.746][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:24.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:24.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.751][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:24.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:24.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.755][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:24.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:24.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:24.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:24.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:24.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:24.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:24.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:24.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:24.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:24.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:24.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:24.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.781][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:24.782][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:24.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:24.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.789][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:24.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:24.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:24.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:24.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.798][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:24.799][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:24.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:24.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:24.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.807][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:24.808][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:24.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.810][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:24.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:24.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:24.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.828][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:24.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.841][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:24.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:24.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.853][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:24.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:24.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:24.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:24.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:24.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:24.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:24.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:24.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:24.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:24.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:24.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:24.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:24.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:24.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:24.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:24.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:24.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:24.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:24.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:24.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:24.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:24.959][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:24.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:24.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.968][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.969][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:24.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.976][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.977][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:24.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.985][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.991][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:24.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:24.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:24.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.002][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.003][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.012][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.013][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.024][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:25.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:25.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:25.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.034][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:25.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:25.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:25.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:25.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:25.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:25.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.049][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:25.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:25.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:25.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:25.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.058][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.067][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:25.069][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:25.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.073][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:25.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:25.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.079][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:25.080][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:25.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.089][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:25.090][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:25.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:25.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:25.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.099][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:25.101][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:25.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:25.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.110][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:25.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.125][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:25.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.158][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:25.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:25.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:25.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:25.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:25.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:25.246][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.255][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.256][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.263][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.265][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.272][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.273][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.281][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.282][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.290][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.291][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.299][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:25.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:25.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-29 16:07:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:25.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:25.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:25.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:25.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:25.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:25.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:25.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:25.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:25.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:25.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:25.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:25.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.341][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:25.342][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:25.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.345][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:25.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:25.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-29 16:07:25.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:25.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.355][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:25.356][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:25.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:25.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:25.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.364][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:25.365][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:25.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.367][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-29 16:07:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-29 16:07:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-29 16:07:25.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-29 16:07:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.423][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-29 16:07:25.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:25.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:25.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:25.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:25.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:25.508][self$createEntryFromContent] Accession numbers: 171658959, 171656633, 171654938.
biodb.DEBUG[2024-06-29 16:07:25.509][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:25.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:25.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.534][private$selectFields]
biodb.TRACE[2024-06-29 16:07:25.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:25.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:25.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.541][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.546][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.547][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.551][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.552][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:25.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.566][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171658959].
biodb.DEBUG[2024-06-29 16:07:25.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:25.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.588][private$selectFields]
biodb.TRACE[2024-06-29 16:07:25.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:25.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:25.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.595][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.597][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.599][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.601][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.606][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171656633].
biodb.DEBUG[2024-06-29 16:07:25.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:25.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.643][private$selectFields]
biodb.TRACE[2024-06-29 16:07:25.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:25.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:25.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.647][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.653][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.658][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.663][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.677][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171654938].
biodb.DEBUG[2024-06-29 16:07:25.678][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:25.679][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:25.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:25.730][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:25.733][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:25.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-29 16:07:25.736][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:25.738][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-29 16:07:25.740][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:25.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:25.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.761][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.762][private$selectFields]
biodb.TRACE[2024-06-29 16:07:25.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:25.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:25.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.767][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.775][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:25.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:25.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:25.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.816][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.817][private$selectFields]
biodb.TRACE[2024-06-29 16:07:25.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:25.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:25.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.825][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.826][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.830][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.831][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.836][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:25.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:25.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.878][private$selectFields]
biodb.TRACE[2024-06-29 16:07:25.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:25.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:25.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.889][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.892][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.897][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171647616].
biodb.DEBUG[2024-06-29 16:07:25.912][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:25.913][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:25.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:25.934][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:25.937][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:25.938][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-29 16:07:25.940][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:25.941][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-29 16:07:25.943][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:25.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:25.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:25.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:25.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:25.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:25.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:25.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:25.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.967][private$selectFields]
biodb.TRACE[2024-06-29 16:07:25.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:25.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:25.970][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.980][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:25.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.986][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:25.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-06-29 16:07:26.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:26.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:26.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:26.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:26.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:26.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:26.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.025][private$selectFields]
biodb.TRACE[2024-06-29 16:07:26.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:26.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:26.028][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.039][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.040][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.041][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.046][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:26.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625410].
biodb.DEBUG[2024-06-29 16:07:26.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:26.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:26.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:26.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:26.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:26.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:26.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:26.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.092][private$selectFields]
biodb.TRACE[2024-06-29 16:07:26.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:26.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:26.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.106][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.111][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:26.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625393].
biodb.DEBUG[2024-06-29 16:07:26.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:26.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:26.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:26.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:26.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:26.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:26.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:26.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:26.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:26.183][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:26.187][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:26.188][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:26.190][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:26.306][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:26.307][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:26.309][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:26.310][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:26.467][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:26.470][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-06-29 16:07:26.492][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-06-29 16:07:26.496][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:26.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:26.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:26.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:26.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:26.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:26.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:26.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:26.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.534][private$selectFields]
biodb.TRACE[2024-06-29 16:07:26.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:26.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:26.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.542][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.547][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.550][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.553][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.555][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.557][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:26.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.575][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:26.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:26.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:26.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:26.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:26.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:26.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:26.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.616][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.617][private$selectFields]
biodb.TRACE[2024-06-29 16:07:26.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:26.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:26.621][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.631][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.633][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660819].
biodb.DEBUG[2024-06-29 16:07:26.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:26.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:26.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:26.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:26.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:26.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:26.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:26.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.715][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.716][private$selectFields]
biodb.TRACE[2024-06-29 16:07:26.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:26.718][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:26.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.724][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.730][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.732][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:26.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.737][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:26.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:26.756][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:26.757][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:26.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:26.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:26.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:26.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:26.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:26.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:26.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:26.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:26.804][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-29 16:07:26.805][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-29 16:07:26.810][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-29 16:07:26.941][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-29 16:07:26.942][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-29 16:07:26.944][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-29 16:07:26.945][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-29 16:07:27.068][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-29 16:07:27.071][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-06-29 16:07:27.076][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-06-29 16:07:27.080][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:27.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.105][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.106][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.107][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.108][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.118][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.119][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.124][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171663214].
biodb.DEBUG[2024-06-29 16:07:27.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.171][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.174][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.175][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.181][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.184][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.185][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.187][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.190][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171663211].
biodb.DEBUG[2024-06-29 16:07:27.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.230][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.243][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.248][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171662463].
biodb.DEBUG[2024-06-29 16:07:27.264][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:27.265][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:27.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:27.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:27.314][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:27.315][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-06-29 16:07:27.316][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:27.319][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-06-29 16:07:27.322][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:27.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.348][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.352][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.362][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.367][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:27.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.407][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.410][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.419][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.420][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.425][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:27.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.469][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.470][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.482][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.483][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.488][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171659294].
biodb.DEBUG[2024-06-29 16:07:27.503][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:27.505][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:27.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:27.525][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:27.528][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:27.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-06-29 16:07:27.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:27.542][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-06-29 16:07:27.545][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:27.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.574][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.592][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.593][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.599][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171658959].
biodb.DEBUG[2024-06-29 16:07:27.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.641][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.644][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.653][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.654][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.656][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.660][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171656633].
biodb.DEBUG[2024-06-29 16:07:27.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.700][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.701][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.702][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.705][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.706][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.715][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.719][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.720][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171654938].
biodb.DEBUG[2024-06-29 16:07:27.736][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:27.737][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:27.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:27.786][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:27.790][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:27.793][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-29 16:07:27.795][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:27.797][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-29 16:07:27.808][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:27.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.845][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.849][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.861][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.863][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.867][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:27.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.937][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.938][private$selectFields]
biodb.TRACE[2024-06-29 16:07:27.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:27.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:27.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.955][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:27.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.962][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:27.979][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:27.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:27.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:27.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:27.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:27.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:27.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:27.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:27.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:27.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:27.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.006][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.010][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.028][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.030][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.035][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.036][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171647616].
biodb.DEBUG[2024-06-29 16:07:28.057][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:28.058][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:28.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:28.083][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:28.087][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:28.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-29 16:07:28.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:28.093][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-29 16:07:28.096][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:28.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.138][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.139][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.143][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.146][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.149][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.155][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.156][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.163][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-06-29 16:07:28.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.234][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.236][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.237][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.238][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.239][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.240][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.252][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.258][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.273][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625410].
biodb.DEBUG[2024-06-29 16:07:28.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.298][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.299][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.300][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.301][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.307][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.311][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.312][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.317][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625393].
biodb.DEBUG[2024-06-29 16:07:28.332][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:28.333][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:28.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:28.377][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:28.381][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:28.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-06-29 16:07:28.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:28.386][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-06-29 16:07:28.389][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:28.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.416][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.419][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.421][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.423][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.428][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.429][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.434][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.449][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-06-29 16:07:28.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.473][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.476][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.478][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.492][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.493][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.498][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.499][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.513][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660819].
biodb.DEBUG[2024-06-29 16:07:28.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.537][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.540][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.541][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.542][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.547][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.550][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.551][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.552][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.557][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171660036].
biodb.DEBUG[2024-06-29 16:07:28.573][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:28.574][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:28.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:28.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:28.598][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:28.599][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-06-29 16:07:28.601][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:28.603][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-06-29 16:07:28.605][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:28.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.629][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.630][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.632][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.643][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.644][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.645][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.649][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.650][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171663214].
biodb.DEBUG[2024-06-29 16:07:28.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.689][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.690][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.691][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.705][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.710][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171663211].
biodb.DEBUG[2024-06-29 16:07:28.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:28.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:28.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:28.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:28.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:28.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:28.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.749][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.750][private$selectFields]
biodb.TRACE[2024-06-29 16:07:28.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:28.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:28.754][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.756][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.764][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.765][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-29 16:07:28.766][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.768][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.771][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-29 16:07:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171662463].
biodb.DEBUG[2024-06-29 16:07:28.787][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:28.789][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:28.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:28.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:28.946][biodb::testThat]
biodb.INFO [2024-06-29 16:07:28.947][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-06-29 16:07:28.948][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:28.950][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:28.953][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-29 16:07:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-29 16:07:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:28.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:29.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:29.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:29.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:29.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:29.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:29.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:29.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:29.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:29.034][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:29.035][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-29 16:07:29.037][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:29.039][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-29 16:07:29.041][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:29.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:29.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:29.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:29.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:29.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:29.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:29.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.143][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.172][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.207][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:29.208][private$selectFields]
biodb.TRACE[2024-06-29 16:07:29.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:29.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:29.211][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:29.212][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.216][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.218][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.221][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.222][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.225][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.226][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.229][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.231][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.234][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.235][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.238][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.248][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.252][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.253][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.254][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.266][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.275][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.276][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.279][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.280][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.288][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.289][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.292][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.293][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.296][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.297][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.301][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.302][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.304][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.305][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.306][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.309][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.324][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.325][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.328][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.336][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.337][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.352][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.353][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.357][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.358][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.362][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:29.363][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:29.365][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.369][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.371][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.373][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.374][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.375][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.378][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.379][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.380][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.384][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.385][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.389][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.390][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.394][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.408][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.421][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.422][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.426][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.435][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.445][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.447][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.452][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.453][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.457][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.608][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.614][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.619][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171632701, [2-(benzofuran-2-yl)-1-methyl-2-oxo-ethyl]-methyl-ammonium, [1-(2-benzofuranyl)-1-oxopropan-2-yl]-methylammonium, [1-(1-benzofuran-2-yl)-1-oxopropan-2-yl]-methylazanium, [1-(1-benzofuran-2-yl)-1-oxidanylidene-propan-2-yl]-methyl-azanium, ...].
biodb.DEBUG[2024-06-29 16:07:29.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:29.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:29.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:29.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:29.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:29.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:29.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:29.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:29.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:29.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:29.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.946][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:29.947][private$selectFields]
biodb.TRACE[2024-06-29 16:07:29.948][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:29.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:29.950][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:29.951][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:29.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:29.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.956][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.957][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:29.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.959][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.960][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.961][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:29.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.964][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.965][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:29.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.968][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.970][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:29.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.973][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.974][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:29.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.976][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.977][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:29.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:29.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:29.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:29.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:29.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.989][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.990][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:29.991][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:29.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.994][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:29.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:29.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:29.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.003][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.004][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.011][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.013][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.016][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.017][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.020][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.025][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.026][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.029][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.030][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.033][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.034][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.039][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.040][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.042][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.043][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.044][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.047][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.059][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.060][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.061][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.063][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.069][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.073][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.078][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.081][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.083][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.086][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.087][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.090][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:30.091][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:30.092][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.096][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.097][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.100][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.101][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.104][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.105][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.109][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.110][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.113][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.114][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.117][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.118][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.129][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.130][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.142][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.150][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.151][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.154][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.156][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.159][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171615080, 5-amino-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, 5-amino-2-(4,5-dimethyl-1-imidazolyl)-3-pyridinol, 5-amino-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, 5-azanyl-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, ...].
biodb.DEBUG[2024-06-29 16:07:30.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:30.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:30.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:30.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:30.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:30.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:30.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:30.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.554][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:30.555][private$selectFields]
biodb.TRACE[2024-06-29 16:07:30.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:30.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:30.558][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:30.559][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.563][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.564][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.565][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.568][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.569][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.571][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.572][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.574][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.576][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.577][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.578][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.581][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.582][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.586][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.599][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.600][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.610][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.611][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.627][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.629][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.631][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.632][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.633][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.636][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.641][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.642][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.645][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.646][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.649][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.651][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.654][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.655][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.658][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.659][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.662][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.667][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.675][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.676][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.679][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.687][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.695][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.696][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.699][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.700][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.703][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:30.704][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:30.705][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.709][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.711][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.714][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.715][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.718][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.719][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.722][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.723][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.726][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.727][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.730][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.734][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.735][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.737][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.738][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.739][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.742][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.744][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.746][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.747][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.756][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.757][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.765][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.766][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.769][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.770][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.774][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:30.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:30.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:30.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:30.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:30.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:30.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:30.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.900][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:30.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:30.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:30.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:30.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:30.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:30.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171615005, 5-fluorospiro[indene-1,4'-tetrahydropyran], 5-fluorospiro[indene-1,4'-oxane], 5-fluorospiro[indene-1,4'-oxane], 5-fluoranylspiro[indene-1,4'-oxane], ...].
biodb.DEBUG[2024-06-29 16:07:31.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:31.003][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:31.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:31.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:31.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:31.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:31.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:31.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:31.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:31.032][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:31.036][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:31.037][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-29 16:07:31.039][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:31.041][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-29 16:07:31.043][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:31.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:31.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:31.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:31.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:31.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:31.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:31.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.151][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.208][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:31.209][private$selectFields]
biodb.TRACE[2024-06-29 16:07:31.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:31.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:31.212][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:31.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.218][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.219][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.222][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.223][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.225][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.226][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.227][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.230][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.231][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.235][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.236][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.239][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.246][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.251][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.253][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.256][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.260][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.266][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.274][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.276][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.279][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.280][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.287][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.289][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.292][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.293][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.296][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.297][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.301][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.302][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.304][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.305][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.306][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.309][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.322][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.323][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.326][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.334][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.335][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.341][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.347][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.350][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.356][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.358][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.364][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:31.366][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:31.367][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.381][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.385][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.390][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.391][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.396][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.399][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.404][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.405][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.407][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.411][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.412][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.415][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.421][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.433][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.434][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.438][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.447][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.454][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.455][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.457][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.459][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.460][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.461][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.464][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.602][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171652018, 1-(2,2,2-trifluoroethyl)indoline-5-carbonitrile, 1-(2,2,2-trifluoroethyl)-2,3-dihydroindole-5-carbonitrile, 1-(2,2,2-trifluoroethyl)-2,3-dihydroindole-5-carbonitrile, 1-[2,2,2-tris(fluoranyl)ethyl]-2,3-dihydroindole-5-carbonitrile, ...].
biodb.DEBUG[2024-06-29 16:07:31.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:31.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:31.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:31.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:31.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:31.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:31.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:31.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:31.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:31.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:31.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:31.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:31.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.914][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:31.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:31.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:31.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:31.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:31.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:31.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:31.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.987][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:31.988][private$selectFields]
biodb.TRACE[2024-06-29 16:07:31.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:31.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:31.991][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:31.992][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:31.994][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:31.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:31.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:31.997][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.998][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:31.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.001][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.002][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.005][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.006][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.009][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.011][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.014][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.015][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.018][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.031][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.032][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.035][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.036][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.042][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.044][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.045][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.048][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.052][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.053][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.056][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.057][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.059][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.060][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.063][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.064][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.066][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.069][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.070][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.073][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.074][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.077][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.078][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.081][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.082][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.085][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.089][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.097][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.099][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.102][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.110][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.118][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.119][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.121][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.122][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.123][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.126][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:32.127][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:32.128][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.132][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.133][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.136][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.137][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.140][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.141][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.144][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.145][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.149][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.150][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.153][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.165][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.166][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.168][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.169][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.177][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.184][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.185][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.187][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.190][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.191][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.194][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:32.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.319][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171652005, 4-[(3,3-difluorocyclobutyl)amino]-2-fluoro-benzonitrile, 4-[(3,3-difluorocyclobutyl)amino]-2-fluorobenzonitrile, 4-[(3,3-difluorocyclobutyl)amino]-2-fluorobenzonitrile, 4-[[3,3-bis(fluoranyl)cyclobutyl]amino]-2-fluoranyl-benzenecarbonitrile, ...].
biodb.DEBUG[2024-06-29 16:07:32.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:32.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:32.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:32.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:32.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:32.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:32.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.509][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.563][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:32.564][private$selectFields]
biodb.TRACE[2024-06-29 16:07:32.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:32.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:32.567][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:32.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.571][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.572][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.573][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.575][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.576][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.578][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.581][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.582][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.585][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.586][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.589][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.590][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.593][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.609][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.613][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.614][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.617][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.626][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.629][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.634][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.635][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.639][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.640][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.642][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.643][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.647][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.648][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.651][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.652][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.655][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.656][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.659][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.660][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.663][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.664][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.667][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.680][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.681][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.684][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.692][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.700][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.701][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.704][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.705][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.708][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:32.709][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:32.710][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.714][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.715][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.718][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.720][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.723][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.724][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.727][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.728][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.731][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.732][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.735][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.738][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.752][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.753][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.768][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:32.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.778][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.779][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:32.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.782][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.783][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.785][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:32.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.788][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:32.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:32.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:32.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:32.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.934][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.944][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:32.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:32.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:32.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:32.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171608484, 3-(1,3,2-dioxaphospholan-2-yloxy)thiolane 1,1-dioxide, 3-(1,3,2-dioxaphospholan-2-yloxy)thiolane 1,1-dioxide, 3-(1,3,2-dioxaphospholan-2-yloxy)thiolane 1,1-dioxide, 3-(1,3,2-dioxaphospholan-2-yloxy)thiolane 1,1-dioxide, ...].
biodb.DEBUG[2024-06-29 16:07:33.052][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:33.053][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:33.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:33.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:33.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:33.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:33.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:33.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:33.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:33.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:33.082][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:33.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-29 16:07:33.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:33.086][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-29 16:07:33.089][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:33.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:33.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:33.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:33.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:33.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:33.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:33.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.181][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.245][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:33.246][private$selectFields]
biodb.TRACE[2024-06-29 16:07:33.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:33.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:33.249][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:33.250][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.255][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.256][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.259][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.260][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.263][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.264][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.267][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.268][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.271][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.272][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.275][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.281][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.284][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.285][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.288][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.289][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.292][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.293][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.300][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.310][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.312][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.314][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.317][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.318][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.321][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.324][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.325][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.326][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.329][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.330][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.333][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.334][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.336][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.337][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.338][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.341][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.343][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.353][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.355][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.363][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.366][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.367][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.371][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.378][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.379][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.380][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.388][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.389][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.392][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.394][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.396][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.397][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.398][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.401][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:33.402][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:33.403][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.407][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.408][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.411][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.412][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.415][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.416][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.419][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.421][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.423][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.424][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.425][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.428][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.435][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.440][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.441][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.444][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.445][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.447][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.450][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.453][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.461][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.462][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.464][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.465][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.466][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.468][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.469][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:33.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.590][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171632701, [2-(benzofuran-2-yl)-1-methyl-2-oxo-ethyl]-methyl-ammonium, [1-(2-benzofuranyl)-1-oxopropan-2-yl]-methylammonium, [1-(1-benzofuran-2-yl)-1-oxopropan-2-yl]-methylazanium, [1-(1-benzofuran-2-yl)-1-oxidanylidene-propan-2-yl]-methyl-azanium, ...].
biodb.DEBUG[2024-06-29 16:07:33.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:33.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:33.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:33.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:33.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:33.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:33.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:33.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.811][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.879][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:33.880][private$selectFields]
biodb.TRACE[2024-06-29 16:07:33.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:33.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:33.883][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:33.884][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.888][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.890][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.893][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.894][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.897][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.899][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.902][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.903][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.906][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.907][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.924][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.925][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:33.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.928][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:33.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:33.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.936][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:33.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:33.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.941][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:33.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.945][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.946][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:33.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.949][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.951][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:33.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.954][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.955][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:33.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.958][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:33.959][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:33.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.963][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.964][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:33.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.967][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.968][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:33.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.972][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.973][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.976][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.977][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:33.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.980][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.982][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:33.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:33.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:33.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:33.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:33.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:33.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:33.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:33.998][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:33.999][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.003][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.012][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.020][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.021][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.022][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.026][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.027][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.031][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.032][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.035][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:34.037][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:34.038][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.042][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.043][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.044][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.048][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.049][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.053][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.054][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.057][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.059][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.062][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.063][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.067][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.071][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.072][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.079][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.080][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.081][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.085][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.115][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.116][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.118][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.119][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.124][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:34.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.264][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.269][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.274][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171615080, 5-amino-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, 5-amino-2-(4,5-dimethyl-1-imidazolyl)-3-pyridinol, 5-amino-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, 5-azanyl-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, ...].
biodb.DEBUG[2024-06-29 16:07:34.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:34.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:34.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:34.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:34.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:34.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:34.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.508][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.593][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:34.594][private$selectFields]
biodb.TRACE[2024-06-29 16:07:34.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:34.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:34.598][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:34.599][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.603][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.605][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.608][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.609][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.613][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.614][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.618][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.619][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.622][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.624][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.627][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.641][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.642][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.646][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.649][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.655][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.664][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.665][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.668][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.669][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.672][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.674][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.677][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.681][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.683][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.686][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.687][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.691][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.692][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.695][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.697][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.700][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.701][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.704][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.710][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.718][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.719][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.722][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.725][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.731][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.737][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.740][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.741][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.743][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.744][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.745][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.747][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.749][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.750][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:34.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.752][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.753][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:34.755][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:34.756][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.760][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.761][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.764][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.765][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.766][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.769][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.770][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.773][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.774][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.778][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.779][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.781][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.782][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.790][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.796][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.797][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.799][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.809][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:34.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:34.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.813][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:34.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.817][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.819][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:34.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.821][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.822][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.823][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:34.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.826][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:34.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:34.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:34.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:34.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:34.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:34.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.061][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171615005, 5-fluorospiro[indene-1,4'-tetrahydropyran], 5-fluorospiro[indene-1,4'-oxane], 5-fluorospiro[indene-1,4'-oxane], 5-fluoranylspiro[indene-1,4'-oxane], ...].
biodb.DEBUG[2024-06-29 16:07:35.062][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:35.063][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:35.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:35.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:35.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:35.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:35.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:35.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:35.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:35.084][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:35.087][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:35.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-29 16:07:35.090][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:35.092][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-29 16:07:35.094][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:35.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:35.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:35.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:35.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:35.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:35.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:35.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:35.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.189][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.261][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:35.262][private$selectFields]
biodb.TRACE[2024-06-29 16:07:35.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:35.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:35.265][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:35.266][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.267][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.270][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.271][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.275][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.276][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.279][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.280][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.283][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.291][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.296][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.297][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.300][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.313][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.314][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.317][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.326][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.332][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.334][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.335][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.336][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.339][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.340][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.343][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.344][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.347][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.351][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.352][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.355][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.357][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.360][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.361][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.365][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.367][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.368][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.369][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.372][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.385][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.386][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.389][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.390][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.393][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.396][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.397][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.404][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.405][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.406][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.409][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.411][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.414][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.415][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.418][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:35.419][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:35.420][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.423][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.424][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.426][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.429][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.430][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.433][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.434][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.437][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.438][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.441][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.442][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.445][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.458][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.459][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.462][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.470][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.478][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.479][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.482][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.483][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.487][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.607][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.709][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171652018, 1-(2,2,2-trifluoroethyl)indoline-5-carbonitrile, 1-(2,2,2-trifluoroethyl)-2,3-dihydroindole-5-carbonitrile, 1-(2,2,2-trifluoroethyl)-2,3-dihydroindole-5-carbonitrile, 1-[2,2,2-tris(fluoranyl)ethyl]-2,3-dihydroindole-5-carbonitrile, ...].
biodb.DEBUG[2024-06-29 16:07:35.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:35.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:35.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:35.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:35.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:35.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:35.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:35.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.838][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.917][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:35.918][private$selectFields]
biodb.TRACE[2024-06-29 16:07:35.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:35.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:35.922][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:35.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.927][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.928][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:35.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.931][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.932][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:35.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.936][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.937][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:35.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.939][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.940][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.941][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:35.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.943][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.944][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.946][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:35.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.949][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:35.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:35.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.953][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:35.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:35.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:35.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.962][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:35.963][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:35.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.966][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.968][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:35.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.971][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:35.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.975][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:35.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:35.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:35.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.984][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.985][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:35.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.988][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.989][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:35.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.993][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.994][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:35.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:35.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:35.997][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:35.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:35.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.001][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.003][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.006][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.007][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.010][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.011][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.015][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.016][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.019][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.020][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.023][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.027][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.037][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.038][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.041][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.042][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.053][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.055][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.058][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.066][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.068][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.069][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.072][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.073][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.077][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.078][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.081][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:36.082][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:36.084][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.088][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.089][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.092][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.094][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.097][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.098][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.101][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.102][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.105][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.107][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.110][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.111][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.114][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.115][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.118][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.119][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.123][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.124][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.126][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.127][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.136][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.140][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.141][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.144][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.146][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.149][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.150][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.153][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.278][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.379][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171652005, 4-[(3,3-difluorocyclobutyl)amino]-2-fluoro-benzonitrile, 4-[(3,3-difluorocyclobutyl)amino]-2-fluorobenzonitrile, 4-[(3,3-difluorocyclobutyl)amino]-2-fluorobenzonitrile, 4-[[3,3-bis(fluoranyl)cyclobutyl]amino]-2-fluoranyl-benzenecarbonitrile, ...].
biodb.DEBUG[2024-06-29 16:07:36.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:36.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:36.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:36.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:36.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:36.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:36.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.490][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.495][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.565][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:36.566][private$selectFields]
biodb.TRACE[2024-06-29 16:07:36.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:36.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:36.569][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:36.571][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.575][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.576][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.580][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.581][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.583][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.584][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.585][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.588][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.589][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.593][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.594][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.597][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.601][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.603][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.610][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.611][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.615][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.618][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.622][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.623][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.631][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.632][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.633][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.636][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.637][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.641][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.642][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.645][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.649][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.650][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.651][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.654][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.655][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.658][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.660][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.663][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.664][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.667][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.668][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.671][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.685][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.686][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.689][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.698][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.707][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.708][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.711][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.713][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.716][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.717][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:36.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.719][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.720][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:36.722][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:36.723][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.727][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.728][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.731][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.733][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.736][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.737][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.740][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.741][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.745][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.746][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.749][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.752][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.759][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.762][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.764][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.766][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.772][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.776][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.777][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.785][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.786][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.789][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.791][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:36.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.794][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:36.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.925][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.930][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.934][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:36.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:36.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:36.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:37.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:37.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:37.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:37.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:37.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171608484, 3-(1,3,2-dioxaphospholan-2-yloxy)thiolane 1,1-dioxide, 3-(1,3,2-dioxaphospholan-2-yloxy)thiolane 1,1-dioxide, 3-(1,3,2-dioxaphospholan-2-yloxy)thiolane 1,1-dioxide, 3-(1,3,2-dioxaphospholan-2-yloxy)thiolane 1,1-dioxide, ...].
biodb.DEBUG[2024-06-29 16:07:37.027][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:37.028][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:37.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:37.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:37.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:37.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:37.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:37.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:37.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:37.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:37.093][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:37.097][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:37.098][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-29 16:07:37.100][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:37.102][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-29 16:07:37.104][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:37.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:37.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:37.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:37.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:37.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:37.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:37.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:37.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:37.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:37.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:37.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:37.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:37.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:37.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:37.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:37.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:37.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:37.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:37.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:37.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:37.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:37.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:37.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:37.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:37.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.238][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:37.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:37.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:37.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:37.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.123][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:38.124][private$selectFields]
biodb.TRACE[2024-06-29 16:07:38.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:38.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:38.128][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:38.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.133][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.134][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.137][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.139][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.142][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.143][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.147][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.148][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.150][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.151][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.152][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.155][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.168][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:38.170][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:38.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.181][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.187][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.190][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.191][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.194][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.196][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.203][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.204][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.208][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.209][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.212][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.213][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.220][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.221][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.225][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.238][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:38.239][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:38.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.242][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.246][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.251][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.252][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.260][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.261][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.264][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.265][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.269][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-29 16:07:38.270][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-29 16:07:38.271][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.276][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.277][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.280][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.281][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.285][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.286][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.289][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.290][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.292][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.293][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.295][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.297][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.298][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.301][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.312][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.315][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.321][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.322][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.324][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.330][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.331][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.333][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.335][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.336][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.340][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171661147, ethane;7-ethyl-2H-phthalazin-1-one, ethane;7-ethyl-2H-phthalazin-1-one, ethane;7-ethyl-2H-phthalazin-1-one, ethane;7-ethyl-2H-phthalazin-1-one, ...].
biodb.DEBUG[2024-06-29 16:07:38.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:38.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:38.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:38.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:38.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:38.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:38.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:38.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:38.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:38.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:38.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.735][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:38.736][private$selectFields]
biodb.TRACE[2024-06-29 16:07:38.737][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:38.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:38.740][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:38.741][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.742][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.745][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.746][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.749][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.750][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.752][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.753][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.754][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.757][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.758][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.760][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.761][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.763][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.765][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.766][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.778][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:38.787][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:38.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.791][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.795][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.796][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.799][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.807][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.808][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.809][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.812][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.813][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.817][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.821][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.822][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.825][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.826][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.829][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.831][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.834][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.835][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.837][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.838][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.839][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.842][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.853][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.854][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:38.855][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:38.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.858][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.867][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.872][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.876][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.877][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.880][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.881][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.885][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:38.886][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:38.887][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.891][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.892][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.895][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.896][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.900][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.901][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.905][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.906][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:38.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.909][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.911][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:38.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.913][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:38.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:38.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:38.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:38.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:38.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.927][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:38.928][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:38.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.931][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:38.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:38.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.939][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:38.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:38.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:38.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.946][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.947][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.949][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:38.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.951][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.952][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.953][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:38.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.956][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:38.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:38.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:38.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:38.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171660036, 3-isopropyl-6-methoxy-7-methyl-pyrazolo[1,5-a]pyridine, 6-methoxy-7-methyl-3-propan-2-ylpyrazolo[1,5-a]pyridine, 6-methoxy-7-methyl-3-propan-2-ylpyrazolo[1,5-a]pyridine, 6-methoxy-7-methyl-3-propan-2-yl-pyrazolo[1,5-a]pyridine, ...].
biodb.DEBUG[2024-06-29 16:07:39.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:39.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:39.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:39.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:39.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:39.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:39.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:39.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.305][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.365][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:39.366][private$selectFields]
biodb.TRACE[2024-06-29 16:07:39.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:39.369][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:39.370][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:39.371][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:39.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:39.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.375][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.377][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.380][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.381][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.384][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.385][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.393][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.394][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.398][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.401][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.411][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.412][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.415][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.417][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.423][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.424][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.433][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.434][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.438][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.439][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.442][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:39.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:39.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.447][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.448][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.452][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.453][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.456][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.457][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.461][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.462][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.464][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.465][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.467][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.470][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.478][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.483][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.484][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.497][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.500][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.503][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.507][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.508][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.511][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.512][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.516][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:39.517][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:39.518][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:39.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:39.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.523][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.524][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.528][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.529][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.531][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.532][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.534][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.545][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.547][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.551][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.552][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.555][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.559][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.569][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.570][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.571][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.574][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.575][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.585][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.598][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.599][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.603][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.604][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.607][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.608][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:39.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:39.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:39.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:39.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:39.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:39.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:39.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:39.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.762][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:39.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:39.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:39.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:39.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:39.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:39.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171647616, 2-(4-methylcyclohexyl)-1,4-benzoquinone, 2-(4-methylcyclohexyl)cyclohexa-2,5-diene-1,4-dione, 2-(4-methylcyclohexyl)cyclohexa-2,5-diene-1,4-dione, 2-(4-methylcyclohexyl)cyclohexa-2,5-diene-1,4-dione, ...].
biodb.DEBUG[2024-06-29 16:07:39.880][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:39.881][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:40.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:40.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:40.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:40.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:40.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:40.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:40.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:40.320][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:40.325][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:40.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-29 16:07:40.328][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:40.331][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-29 16:07:40.334][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:40.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:40.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:40.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:40.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:40.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:40.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:40.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:40.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:40.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:40.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:40.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:40.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:40.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:40.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:40.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.657][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:40.658][private$selectFields]
biodb.TRACE[2024-06-29 16:07:40.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:40.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:40.661][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:40.662][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:40.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:40.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.665][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.666][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.668][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.671][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.672][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.675][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.676][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.679][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.681][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.684][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.685][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.688][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:40.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:40.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:40.693][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:40.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.697][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.701][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:40.702][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:40.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.705][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.714][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:40.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:40.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.722][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.724][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.727][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.728][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.732][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:40.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:40.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.737][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.738][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.740][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.741][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.743][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.746][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.747][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.750][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.751][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.754][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.755][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.759][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:40.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:40.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:40.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.766][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.771][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:40.773][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:40.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.779][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.784][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:40.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:40.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.792][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.794][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.797][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.798][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.801][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:40.802][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:40.803][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:40.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:40.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.807][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.808][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.810][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.811][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.813][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.816][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.817][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.820][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.821][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.823][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.824][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.825][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.827][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.828][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:40.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:40.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:40.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:40.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.838][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.841][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:40.842][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:40.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.845][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:40.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:40.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.853][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:40.854][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:40.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:40.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.861][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.862][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.863][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:40.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.866][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.867][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:40.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.870][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:40.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:40.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:40.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:40.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:40.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:40.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.008][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.100][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171651179, 1-fluoro-N-[(3R,4S)-4-fluoropyrrolidin-3-yl]cyclopropanesulfonamide, 1-fluoro-N-[(3R,4S)-4-fluoro-3-pyrrolidinyl]-1-cyclopropanesulfonamide, 1-fluoro-N-[(3R,4S)-4-fluoropyrrolidin-3-yl]cyclopropane-1-sulfonamide, 1-fluoranyl-N-[(3R,4S)-4-fluoranylpyrrolidin-3-yl]cyclopropane-1-sulfonamide, ...].
biodb.DEBUG[2024-06-29 16:07:41.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:41.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:41.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:41.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:41.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:41.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:41.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.255][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:41.256][private$selectFields]
biodb.TRACE[2024-06-29 16:07:41.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:41.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:41.260][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:41.261][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.276][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.277][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.280][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.282][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.285][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.286][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.290][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.291][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.295][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.296][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.300][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.310][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.315][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.318][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.322][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.324][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.326][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.332][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.336][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.337][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.338][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.341][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.343][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.347][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.348][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.351][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.356][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.358][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.360][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.361][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.362][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.364][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.366][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.367][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.371][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.372][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.375][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.377][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.382][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.383][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.387][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.391][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.392][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.395][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.396][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.400][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.404][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.409][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.419][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.421][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.423][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.424][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.426][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.430][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:41.431][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:41.432][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.437][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.438][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.441][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.444][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.447][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.449][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.452][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.454][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.458][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.459][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.463][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.470][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.474][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.481][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.482][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.486][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.487][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.489][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.494][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.495][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.503][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.506][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.508][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.509][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.511][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.512][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.513][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.517][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.634][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.738][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171625410, 3-thiomorpholinosulfanylaniline, 3-(thiomorpholin-4-ylthio)aniline, 3-thiomorpholin-4-ylsulfanylaniline, 3-thiomorpholin-4-ylsulfanylaniline, ...].
biodb.DEBUG[2024-06-29 16:07:41.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:41.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:41.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:41.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:41.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:41.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:41.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:41.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.889][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:41.890][private$selectFields]
biodb.TRACE[2024-06-29 16:07:41.891][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:41.892][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:41.893][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:41.894][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.898][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.899][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.902][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.903][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.906][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.907][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.910][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.911][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.913][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.914][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.915][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.918][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.925][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.928][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.931][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.932][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:41.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.939][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:41.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.943][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:41.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:41.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.946][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:41.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.951][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.952][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:41.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.955][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.956][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:41.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.959][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:41.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:41.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.964][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.965][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:41.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.968][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.969][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:41.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.972][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.973][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:41.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.976][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.977][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:41.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.980][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.981][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:41.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.984][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:41.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:41.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:41.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:41.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:41.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:41.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:41.997][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:41.998][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:41.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.001][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.002][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.018][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.027][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.028][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.031][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.032][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.036][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:42.037][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:42.038][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.041][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.042][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.043][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.046][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.047][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.051][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.052][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.055][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.056][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.058][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.059][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.060][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.063][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.067][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.076][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:42.077][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:42.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.079][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.080][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.089][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.097][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.098][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.101][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.102][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.106][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:42.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171625393, 4-thiomorpholinosulfanylaniline, 4-(thiomorpholin-4-ylthio)aniline, 4-thiomorpholin-4-ylsulfanylaniline, 4-thiomorpholin-4-ylsulfanylaniline, ...].
biodb.DEBUG[2024-06-29 16:07:42.318][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:42.319][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:42.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:42.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:42.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:42.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:42.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:42.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:42.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:42.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:42.355][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:42.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-29 16:07:42.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:42.362][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-29 16:07:42.364][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:42.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:42.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:42.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:42.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:42.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:42.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:42.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:42.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:42.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.524][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:42.525][private$selectFields]
biodb.TRACE[2024-06-29 16:07:42.526][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:42.527][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:42.528][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:42.529][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.533][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.534][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.535][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.537][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.538][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.539][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.541][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.542][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.543][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.546][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.547][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.550][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.551][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.554][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.566][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:42.567][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:42.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.569][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.570][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.578][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.583][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.584][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.587][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.588][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.591][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.592][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.594][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.595][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:42.596][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:42.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.599][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.603][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.604][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.607][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.608][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.610][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.611][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.612][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.614][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.615][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.617][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.619][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.620][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.621][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.624][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.631][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.639][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:42.641][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:42.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.645][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.655][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.664][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.665][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.669][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.671][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.676][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:42.677][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:42.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.680][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-29 16:07:42.682][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-29 16:07:42.683][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.684][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.688][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.690][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.695][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.696][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.700][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.701][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.704][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.705][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.708][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.710][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.714][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.729][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.732][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.735][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.738][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.739][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.740][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.743][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.751][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.763][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.764][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.766][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.767][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.769][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.772][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:42.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:42.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:42.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:42.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:42.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171661147, ethane;7-ethyl-2H-phthalazin-1-one, ethane;7-ethyl-2H-phthalazin-1-one, ethane;7-ethyl-2H-phthalazin-1-one, ethane;7-ethyl-2H-phthalazin-1-one, ...].
biodb.DEBUG[2024-06-29 16:07:43.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:43.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:43.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:43.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:43.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:43.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:43.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:43.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:43.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:43.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:43.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.088][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:43.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:43.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.092][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:43.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:43.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:43.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:43.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.165][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:43.166][private$selectFields]
biodb.TRACE[2024-06-29 16:07:43.167][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:43.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:43.168][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:43.170][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:43.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:43.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.174][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.175][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.179][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.182][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.183][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.190][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.194][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:43.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:43.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:43.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:43.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.203][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.206][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:43.207][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:43.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.210][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.211][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.219][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:43.220][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:43.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.227][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.228][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.231][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.232][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.235][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:43.236][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:43.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.239][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:43.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:43.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.244][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.245][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.248][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.249][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.251][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.252][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.253][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.256][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.257][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.260][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.261][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.264][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:43.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:43.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:43.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:43.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.271][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.276][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:43.277][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:43.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.280][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.288][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:43.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:43.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.296][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.297][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.300][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.301][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.304][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:43.305][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:43.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.308][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:43.309][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:43.310][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:43.312][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:43.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.314][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.316][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.318][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.320][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.323][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.324][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.326][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.328][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.330][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.332][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.333][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.334][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:43.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:43.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:43.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:43.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.344][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.347][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:43.348][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:43.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.351][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:43.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:43.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.358][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:43.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:43.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:43.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.366][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.368][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:43.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.370][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.371][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:43.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.373][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.375][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:43.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:43.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:43.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:43.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:43.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:43.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:43.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:43.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:43.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:43.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:43.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:43.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:43.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.526][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:43.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:44.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:44.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:44.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171660036, 3-isopropyl-6-methoxy-7-methyl-pyrazolo[1,5-a]pyridine, 6-methoxy-7-methyl-3-propan-2-ylpyrazolo[1,5-a]pyridine, 6-methoxy-7-methyl-3-propan-2-ylpyrazolo[1,5-a]pyridine, 6-methoxy-7-methyl-3-propan-2-yl-pyrazolo[1,5-a]pyridine, ...].
biodb.DEBUG[2024-06-29 16:07:44.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:44.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:44.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:44.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:44.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:44.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:44.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:44.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:44.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:44.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:44.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:44.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:44.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:44.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:44.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:44.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:44.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:44.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:44.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:44.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:44.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:44.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:44.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:44.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:44.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:44.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:44.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.915][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:44.916][private$selectFields]
biodb.TRACE[2024-06-29 16:07:44.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:44.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:44.919][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:44.920][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:44.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:44.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.925][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:44.926][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:44.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.928][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.929][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:44.930][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.933][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:44.934][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:44.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.937][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:44.938][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:44.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.941][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:44.943][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:44.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.946][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:44.947][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:44.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:44.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:44.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:44.955][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:44.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.966][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:44.968][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:44.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.971][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:44.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:44.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.980][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:44.981][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:44.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:44.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.988][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.989][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:44.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.993][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.994][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:44.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:44.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:44.997][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:44.998][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:44.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.001][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.002][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.006][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.007][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.010][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.011][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.014][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.015][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.018][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.019][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.022][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.023][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.027][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.036][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.039][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.040][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.042][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.048][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.051][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.058][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.059][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.060][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.063][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.064][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.066][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.067][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.069][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.072][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:45.073][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:45.074][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.078][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.079][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.082][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.083][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.086][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.087][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.090][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.092][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.095][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.096][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.099][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.102][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.108][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.111][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.112][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.113][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.115][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.117][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.125][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.133][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.134][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.137][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.139][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.140][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.142][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.266][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171647616, 2-(4-methylcyclohexyl)-1,4-benzoquinone, 2-(4-methylcyclohexyl)cyclohexa-2,5-diene-1,4-dione, 2-(4-methylcyclohexyl)cyclohexa-2,5-diene-1,4-dione, 2-(4-methylcyclohexyl)cyclohexa-2,5-diene-1,4-dione, ...].
biodb.DEBUG[2024-06-29 16:07:45.370][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:45.371][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-29 16:07:45.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:45.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:45.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:45.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:45.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:45.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:45.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:45.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-29 16:07:45.399][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-29 16:07:45.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-29 16:07:45.402][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:45.404][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-29 16:07:45.407][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-29 16:07:45.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:45.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:45.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:45.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:45.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:45.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:45.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.545][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.550][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.629][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:45.631][private$selectFields]
biodb.TRACE[2024-06-29 16:07:45.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:45.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:45.634][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:45.636][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.641][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.642][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.646][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.647][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.651][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.652][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.656][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.658][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.662][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.664][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.667][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.668][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.674][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.688][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.689][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.693][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.702][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.713][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.714][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.718][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.720][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.724][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.725][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.728][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.732][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.733][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.734][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.737][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.738][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.740][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.741][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.743][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.746][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.747][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.750][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.751][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.754][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.777][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.778][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.781][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.790][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.797][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.798][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.800][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.803][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.804][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.807][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.809][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:45.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.812][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:45.814][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:45.816][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.820][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.821][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.825][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.826][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.829][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.830][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.833][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.834][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.838][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.839][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.842][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.853][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.854][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:45.856][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:45.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.859][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:45.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:45.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.868][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:45.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:45.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.871][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:45.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.877][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.878][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.882][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.883][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:45.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.886][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:45.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:45.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:45.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:45.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:45.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:45.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:45.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:45.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:45.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.011][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171651179, 1-fluoro-N-[(3R,4S)-4-fluoropyrrolidin-3-yl]cyclopropanesulfonamide, 1-fluoro-N-[(3R,4S)-4-fluoro-3-pyrrolidinyl]-1-cyclopropanesulfonamide, 1-fluoro-N-[(3R,4S)-4-fluoropyrrolidin-3-yl]cyclopropane-1-sulfonamide, 1-fluoranyl-N-[(3R,4S)-4-fluoranylpyrrolidin-3-yl]cyclopropane-1-sulfonamide, ...].
biodb.DEBUG[2024-06-29 16:07:46.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:46.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:46.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:46.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:46.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:46.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:46.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.198][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.265][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:46.266][private$selectFields]
biodb.TRACE[2024-06-29 16:07:46.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:46.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:46.269][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:46.270][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.274][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.275][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.278][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.280][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.283][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.284][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.287][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.288][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.291][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.292][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.295][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.303][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.307][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.308][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.311][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.315][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.320][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.328][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.329][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.332][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.333][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.336][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.337][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.340][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.344][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.345][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.347][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.348][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.349][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.352][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.353][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.356][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.357][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.360][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.361][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.364][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.367][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.370][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.376][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.377][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.378][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.386][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.389][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.392][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.393][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.394][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.396][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.398][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.399][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.402][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.403][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.404][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.407][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.408][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.411][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:46.412][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:46.413][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.417][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.418][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.422][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.423][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.425][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.426][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.427][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.430][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.431][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.434][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.435][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.438][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.442][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.443][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.450][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.452][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.455][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.458][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.470][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.476][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.480][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.481][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.487][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.488][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.490][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.491][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.620][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.714][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171625410, 3-thiomorpholinosulfanylaniline, 3-(thiomorpholin-4-ylthio)aniline, 3-thiomorpholin-4-ylsulfanylaniline, 3-thiomorpholin-4-ylsulfanylaniline, ...].
biodb.DEBUG[2024-06-29 16:07:46.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:46.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:46.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:46.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:46.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:46.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:46.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.811][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.887][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:46.888][private$selectFields]
biodb.TRACE[2024-06-29 16:07:46.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-29 16:07:46.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-29 16:07:46.891][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:46.892][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.895][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.896][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.897][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.901][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.902][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.905][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.906][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.909][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.910][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.913][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.914][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.917][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.925][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.930][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:46.931][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:46.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.933][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.934][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:46.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:46.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.942][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:46.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:46.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.946][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:46.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.951][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.952][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:46.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.955][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.956][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:46.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.959][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.960][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:46.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.964][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:46.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:46.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.968][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.969][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:46.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.972][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.974][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:46.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.976][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.977][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.978][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:46.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.981][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.982][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:46.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.985][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.986][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:46.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.989][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:46.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:46.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:46.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:46.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:46.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:46.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:46.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.002][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:47.003][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:47.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.006][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.014][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:47.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:47.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.022][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.024][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.027][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.028][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.031][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-29 16:07:47.032][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-29 16:07:47.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.035][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:47.036][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-29 16:07:47.037][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:47.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:47.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.041][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:47.042][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.045][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:47.046][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:47.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.049][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:47.051][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:47.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.053][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:47.055][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:47.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.058][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:47.059][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:47.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.062][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:47.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:47.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:47.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:47.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.072][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.075][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:47.076][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:47.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.079][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.088][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:47.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.092][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.093][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.097][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.098][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.101][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.102][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.106][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-29 16:07:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:47.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:47.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:47.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:47.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:47.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-29 16:07:47.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:47.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:47.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:47.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-29 16:07:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:47.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-29 16:07:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:47.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:47.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:47.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-29 16:07:47.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:47.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:47.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-29 16:07:47.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:47.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:47.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-29 16:07:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-29 16:07:47.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:47.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-29 16:07:47.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-29 16:07:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-29 16:07:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.239][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:47.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:47.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.243][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-29 16:07:47.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-29 16:07:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-29 16:07:47.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-29 16:07:47.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:47.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:47.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:47.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:47.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-29 16:07:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-29 16:07:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-29 16:07:47.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-29 16:07:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171625393, 4-thiomorpholinosulfanylaniline, 4-(thiomorpholin-4-ylthio)aniline, 4-thiomorpholin-4-ylsulfanylaniline, 4-thiomorpholin-4-ylsulfanylaniline, ...].
biodb.DEBUG[2024-06-29 16:07:47.341][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-29 16:07:47.342][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-29 16:07:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:47.354][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:47.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-29 16:07:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:47.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:47.368][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-29 16:07:47.369][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-06-29 16:07:47.371][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-06-29 16:07:47.372][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-29 16:07:47.373][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:47.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:47.375][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.377][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-29 16:07:47.387][biodb::testContext]
biodb.INFO [2024-06-29 16:07:47.388][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-29 16:07:47.389][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-06-29 16:07:47.390][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-29 16:07:47.391][biodb::testContext]
biodb.INFO [2024-06-29 16:07:47.394][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-29 16:07:47.396][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-29 16:07:47.402][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:07:47.403][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-29 16:07:47.404][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-29 16:07:47.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.410][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-29 16:07:47.413][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-29 16:07:47.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.419][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-29 16:07:47.421][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-29 16:07:47.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.428][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-29 16:07:47.430][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-29 16:07:47.431][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-29 16:07:47.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.438][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-29 16:07:47.440][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-29 16:07:47.442][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-29 16:07:47.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.447][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-29 16:07:47.448][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-29 16:07:47.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.454][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-29 16:07:47.455][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-29 16:07:47.457][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-29 16:07:47.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.461][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-29 16:07:47.463][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-29 16:07:47.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.469][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-29 16:07:47.471][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-29 16:07:47.472][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-29 16:07:47.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.478][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-29 16:07:47.479][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-29 16:07:47.481][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-29 16:07:47.482][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-29 16:07:47.483][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-29 16:07:47.484][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-29 16:07:47.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.489][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-29 16:07:47.491][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-29 16:07:47.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.496][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-29 16:07:47.498][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-29 16:07:47.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.503][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-29 16:07:47.505][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-29 16:07:47.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.511][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-29 16:07:47.513][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-29 16:07:47.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.518][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-29 16:07:47.521][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-29 16:07:47.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.526][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-29 16:07:47.527][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-29 16:07:47.533][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-29 16:07:47.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.538][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-29 16:07:47.539][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-29 16:07:47.541][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-29 16:07:47.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.545][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-29 16:07:47.548][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.549][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-29 16:07:47.550][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.551][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:07:47.553][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.554][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.555][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.557][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.558][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-29 16:07:47.559][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:07:47.561][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.562][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-29 16:07:47.563][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:07:47.564][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.566][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.567][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:07:47.567][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:07:47.567][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:07:47.567][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-29 16:07:47.567][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-29 16:07:47.568][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:07:47.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:47.571][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:47.572][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:07:47.573][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:47.574][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:47.576][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.577][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.578][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:07:47.579][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:07:47.580][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.582][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.583][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-29 16:07:47.585][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.586][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-29 16:07:47.587][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.589][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:07:47.590][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.592][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.593][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.594][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.595][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-29 16:07:47.596][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:07:47.597][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.599][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-29 16:07:47.600][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:07:47.601][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.602][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.604][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:07:47.604][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:07:47.604][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:07:47.604][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-29 16:07:47.604][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-29 16:07:47.605][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:07:47.606][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:47.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:47.610][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:07:47.611][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:47.612][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:47.613][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.614][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.615][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:07:47.617][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:07:47.627][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.629][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.631][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-29 16:07:47.633][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.634][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-29 16:07:47.636][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.637][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:07:47.639][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.641][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.643][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.644][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.646][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-29 16:07:47.648][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:07:47.650][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.652][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-29 16:07:47.654][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:07:47.655][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.656][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.658][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.659][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:07:47.661][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:47.662][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:47.664][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:07:47.665][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:47.667][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:47.668][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.669][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.671][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:07:47.672][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:07:47.674][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.675][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.679][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-29 16:07:47.681][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.683][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-29 16:07:47.684][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.687][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:07:47.689][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.691][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.693][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.696][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.697][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-29 16:07:47.700][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:07:47.702][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.703][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-29 16:07:47.705][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:07:47.707][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.710][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:47.711][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.712][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-29 16:07:47.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:47.715][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:47.716][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:07:47.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:47.720][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:47.722][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:07:47.724][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.725][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:07:47.726][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:07:47.728][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:47.729][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:47.731][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:07:47.733][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.830][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-29 16:07:47.831][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-29 16:07:47.833][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-29 16:07:47.834][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-29 16:07:47.836][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-29 16:07:47.837][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-29 16:07:47.839][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-29 16:07:47.840][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-29 16:07:47.842][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-29 16:07:47.843][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-29 16:07:47.845][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-29 16:07:47.846][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-29 16:07:47.848][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-29 16:07:47.849][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-29 16:07:47.851][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-29 16:07:47.853][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-29 16:07:47.854][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-29 16:07:47.856][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-29 16:07:47.857][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-29 16:07:47.859][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-29 16:07:47.861][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-29 16:07:47.862][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-29 16:07:47.864][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-29 16:07:47.865][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-29 16:07:47.867][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-29 16:07:47.868][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-29 16:07:47.870][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-29 16:07:47.872][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-29 16:07:47.873][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-29 16:07:47.875][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-29 16:07:47.876][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-29 16:07:47.878][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-29 16:07:47.879][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-29 16:07:47.881][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-29 16:07:47.882][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-29 16:07:47.884][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-29 16:07:47.885][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-29 16:07:47.887][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-29 16:07:47.888][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-29 16:07:47.890][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-29 16:07:47.892][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-29 16:07:47.893][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-29 16:07:47.895][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-29 16:07:47.896][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-29 16:07:47.898][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-29 16:07:47.899][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-29 16:07:47.901][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-29 16:07:47.902][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-29 16:07:47.904][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-29 16:07:47.905][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-29 16:07:47.907][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-29 16:07:47.909][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-29 16:07:47.910][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-29 16:07:47.912][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-29 16:07:47.913][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-29 16:07:47.915][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-29 16:07:47.916][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-29 16:07:47.918][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-29 16:07:47.920][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-29 16:07:47.921][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-29 16:07:47.923][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-29 16:07:47.924][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-29 16:07:47.926][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-29 16:07:47.927][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-29 16:07:47.929][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-29 16:07:47.930][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-29 16:07:47.932][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-29 16:07:47.933][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-29 16:07:47.935][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-29 16:07:47.936][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-29 16:07:47.938][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-29 16:07:47.939][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-29 16:07:47.941][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-29 16:07:47.942][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-29 16:07:47.944][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-29 16:07:47.945][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-29 16:07:47.947][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-29 16:07:47.949][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-29 16:07:47.950][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-29 16:07:47.952][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-29 16:07:47.953][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-29 16:07:47.955][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-29 16:07:47.956][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-29 16:07:47.958][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-29 16:07:47.961][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-29 16:07:47.962][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-29 16:07:47.963][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.966][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:47.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:47.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:47.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:47.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:47.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:47.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:47.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:47.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:47.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:47.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:47.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:47.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:47.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:47.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-29 16:07:48.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-29 16:07:48.101][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-29 16:07:48.103][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-29 16:07:48.105][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.106][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-29 16:07:48.107][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.108][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:07:48.109][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.110][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.111][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.112][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.113][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-29 16:07:48.114][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:07:48.116][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.117][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-29 16:07:48.118][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:07:48.119][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-29 16:07:48.119][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-29 16:07:48.120][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:48.121][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:48.122][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-29 16:07:48.123][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:48.124][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:48.125][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:07:48.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:48.127][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:48.128][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.129][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-29 16:07:48.129][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-29 16:07:48.130][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:07:48.131][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:07:48.132][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.133][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:48.135][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-29 16:07:48.136][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.137][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-29 16:07:48.138][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.139][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:07:48.140][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.142][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.143][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.144][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.145][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:07:48.146][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:07:48.147][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.148][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-29 16:07:48.149][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:07:48.150][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-29 16:07:48.150][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-29 16:07:48.150][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-29 16:07:48.150][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-29 16:07:48.150][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-29 16:07:48.150][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-29 16:07:48.151][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:48.152][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:07:48.153][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-29 16:07:48.154][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:48.155][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:48.156][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:07:48.157][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:48.158][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:48.159][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.160][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:48.160][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:07:48.162][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:07:48.163][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:07:48.164][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.165][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:48.166][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-29 16:07:48.168][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:48.169][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-29 16:07:48.170][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.171][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:07:48.172][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.173][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.174][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.175][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.176][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:07:48.177][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:07:48.178][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.179][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-29 16:07:48.180][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.181][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-29 16:07:48.183][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:48.184][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-29 16:07:48.184][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-29 16:07:48.184][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-29 16:07:48.185][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-29 16:07:48.186][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:48.187][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:48.188][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:07:48.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:48.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:48.191][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.192][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:48.192][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:07:48.192][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-29 16:07:48.193][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:07:48.194][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:07:48.195][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.196][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:07:48.198][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-29 16:07:48.199][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.200][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-29 16:07:48.201][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.203][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-29 16:07:48.204][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.205][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.206][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.207][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.208][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-29 16:07:48.209][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-29 16:07:48.210][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.211][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-29 16:07:48.212][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-29 16:07:48.213][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-29 16:07:48.213][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-29 16:07:48.214][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-29 16:07:48.215][self$setPropertyValue]
biodb.DEBUG[2024-06-29 16:07:48.216][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-29 16:07:48.217][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:48.218][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:48.219][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-29 16:07:48.220][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-29 16:07:48.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-29 16:07:48.222][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-29 16:07:48.223][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-29 16:07:48.223][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-29 16:07:48.223][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-29 16:07:48.224][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-29 16:07:48.225][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-29 16:07:48.226][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-29 16:07:48.227][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:07:48.229][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-29 16:07:48.230][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-29 16:07:48.232][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-29 16:07:48.233][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-29 16:07:48.235][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-29 16:07:48.236][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-29 16:07:48.241][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-29 16:07:48.242][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-06-29 16:07:48.243][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-29 16:07:48.245][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-06-29 16:07:48.246][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-29 16:07:48.247][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-29 16:07:48.249][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-06-29 16:07:48.250][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-29 16:07:48.251][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-29 16:07:48.253][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-29 16:07:48.258][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-06-29 16:07:48.264][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.265][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-29 16:07:48.266][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:48.269][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:48.273][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-06-29 16:07:48.275][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:07:48.279][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-06-29 16:07:48.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:48.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:48.297][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:48.362][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-06-29 16:07:48.365][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.370][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:48.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:48.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:48.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.563][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.567][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.577][ef$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:48.589][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.590][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-29 16:07:48.591][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:48.592][biodb::testThat]
biodb.DEBUG[2024-06-29 16:07:48.595][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-06-29 16:07:48.597][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-29 16:07:48.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-06-29 16:07:48.602][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-29 16:07:48.612][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-06-29 16:07:48.614][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-06-29 16:07:48.616][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-06-29 16:07:48.617][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-06-29 16:07:48.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-29 16:07:48.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:48.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:48.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:48.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:48.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:48.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-29 16:07:48.637][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.647][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-29 16:07:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-29 16:07:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-29 16:07:48.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-29 16:07:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-29 16:07:48.700][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-06-29 16:07:48.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-29 16:07:48.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-29 16:07:48.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:07:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-29 16:07:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:07:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-29 16:07:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:48.730][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.731][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-29 16:07:48.732][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:48.733][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.742][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.743][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-29 16:07:48.744][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:48.745][biodb::testThat]
biodb.WARN [2024-06-29 16:07:48.749][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-06-29 16:07:48.753][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-06-29 16:07:48.763][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.764][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-29 16:07:48.765][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:48.766][biodb::testThat]
biodb.TRACE[2024-06-29 16:07:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:48.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:48.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.802][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:48.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:48.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.806][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:48.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.820][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-29 16:07:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-29 16:07:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-29 16:07:48.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:48.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-29 16:07:48.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-29 16:07:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-29 16:07:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-29 16:07:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-29 16:07:48.870][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.871][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-29 16:07:48.872][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:48.873][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.887][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.889][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-29 16:07:48.891][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:48.892][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.907][biodb::testThat]
biodb.INFO [2024-06-29 16:07:48.908][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-29 16:07:48.909][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:48.910][biodb::testThat]
biodb.DEBUG[2024-06-29 16:07:48.915][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-06-29 16:07:49.067][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-06-29 16:07:49.232][biodb::testThat]
biodb.INFO [2024-06-29 16:07:49.233][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-29 16:07:49.234][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-29 16:07:49.235][biodb::testThat]
biodb.DEBUG[2024-06-29 16:07:49.419][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-06-29 16:07:49.597][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-29 16:07:49.599][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-06-29 16:07:49.601][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-06-29 16:07:49.602][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-29 16:07:49.603][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-29 16:07:49.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-29 16:07:49.605][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-29 16:07:49.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-29 16:07:49.607][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-29 16:07:49.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1034 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1034 ]
> 
> proc.time()
   user  system elapsed 
  51.43    6.18  100.46

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package 'biodbNcbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)